mRNA_S-ischiensis_contig95.21045.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig95.21045.1
Unique NamemRNA_S-ischiensis_contig95.21045.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig95.21045.1 vs. uniprot
Match: A0A6H5KUE2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE2_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.050e-15
Identity = 42/63 (66.67%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:   40 DGGVSVDG-LLDFFFRSQNLELTCERCGHDRVRAEHALVGLPGVLVVHIKRFKMKLPRAPCPP 225
            DGGVS  G LLD FF+   L L CERCGHDRVRAEH+L  LPG LV+HIKRFK   P A  PP
Sbjct:  805 DGGVSELGDLLDNFFQPSELSLRCERCGHDRVRAEHSLAELPGALVLHIKRFK---PVASAPP 864
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BLAST of mRNA_S-ischiensis_contig95.21045.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.760e-14
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   40 DGGVSVDG-LLDFFFRSQNLELTCERCGHDRVRAEHALVGLPGVLVVHIKRFK 195
            DGGVS  G LLD FF+   L L CERCGHDRVRAEH+L  LPG LV+H+KRFK
Sbjct:  707 DGGVSGLGDLLDSFFQPSELSLRCERCGHDRVRAEHSLAELPGALVLHVKRFK 759
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BLAST of mRNA_S-ischiensis_contig95.21045.1 vs. uniprot
Match: A7RGC9_NEMVE (Predicted protein n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RGC9_NEMVE)

HSP 1 Score: 53.5 bits (127), Expect = 1.760e-6
Identity = 21/49 (42.86%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   46 GVSVDGLLDFFFRSQNLELTCERCGHDRVRAEHALVGLPGVLVVHIKRF 192
            G+ VD L+  +FR++N+E TCE C H +    H    LP VL++H+KR+
Sbjct:  445 GLPVDRLIKSYFRTENVEYTCEECKHKQATISHKFSRLPRVLILHLKRY 493
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BLAST of mRNA_S-ischiensis_contig95.21045.1 vs. uniprot
Match: UPI0019238711 (ubiquitin carboxyl-terminal hydrolase 26 n=1 Tax=Hyaena hyaena TaxID=95912 RepID=UPI0019238711)

HSP 1 Score: 53.1 bits (126), Expect = 2.400e-6
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   49 VSVDGLLDFFFRSQNLELTCERCGHDRVRAEHALVGLPGVLVVHIKRF 192
            +S+    D FFR+++LE TCE+C H     +H    LP VL+VH+KR+
Sbjct:  476 LSIQSAFDLFFRTEDLEYTCEKCKHKSSIGKHKFSRLPRVLIVHLKRY 523
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BLAST of mRNA_S-ischiensis_contig95.21045.1 vs. uniprot
Match: UPI001B888D97 (ubiquitin carboxyl-terminal hydrolase 37-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B888D97)

HSP 1 Score: 53.1 bits (126), Expect = 2.410e-6
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:   52 SVDGLLDFFFRSQNLELTCERCGHDRVRAEHALVGLPGVLVVHIKRF 192
            S+   LD FF+ + LE TC +CGH +    H    LP +L++H+KR+
Sbjct:  434 SIQDALDVFFKKEELEYTCGKCGHSKSEVTHKFTRLPRILILHVKRY 480
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BLAST of mRNA_S-ischiensis_contig95.21045.1 vs. uniprot
Match: A0A7S2G917_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G917_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 6.770e-6
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   52 SVDGLLDFFFRSQNLELTCERCGHDRVRAEHALVGLPGVLVVHIKRFKMKL 204
            S+  LL  FF S  L+L CE+C    VR+   L  LPGVLV+H+KRF+  L
Sbjct:   28 SITSLLRSFFSSTQLDLQCEKCMCQSVRSYRRLSALPGVLVLHLKRFQADL 78
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BLAST of mRNA_S-ischiensis_contig95.21045.1 vs. uniprot
Match: A0A261Y2X6_9FUNG (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y2X6_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 8.430e-6
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:   49 VSVDGLLDFFFRSQNLELTCERCGHDRVRAEHALVGLPGVLVVHIKRF 192
            + V+ L+  FF+ Q L   CE+CGHD V    +   LP VLVVH+KRF
Sbjct:  408 MDVNMLIYQFFKDQQLNYKCEKCGHDEVTLAQSFEKLPRVLVVHLKRF 455
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BLAST of mRNA_S-ischiensis_contig95.21045.1 vs. uniprot
Match: UPI001E1E10DE (ubiquitin carboxyl-terminal hydrolase 37-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E10DE)

HSP 1 Score: 51.2 bits (121), Expect = 1.160e-5
Identity = 18/47 (38.30%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:   52 SVDGLLDFFFRSQNLELTCERCGHDRVRAEHALVGLPGVLVVHIKRF 192
            S+   L  FF+++ +E TCE+CGH +    H +  LP V ++H+KR+
Sbjct:  460 SLQDALSLFFKNEQIEYTCEKCGHGKSDVSHKITRLPRVFILHLKRY 506
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BLAST of mRNA_S-ischiensis_contig95.21045.1 vs. uniprot
Match: UPI0004ED39C8 (ubiquitin carboxyl-terminal hydrolase 26 n=1 Tax=Nannospalax galili TaxID=1026970 RepID=UPI0004ED39C8)

HSP 1 Score: 50.8 bits (120), Expect = 1.570e-5
Identity = 19/48 (39.58%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   49 VSVDGLLDFFFRSQNLELTCERCGHDRVRAEHALVGLPGVLVVHIKRF 192
            +S+    D FF+++ LE TCE+C H+R    H    LP V+++H+KR+
Sbjct:  470 LSIQSSFDHFFKTEELEHTCEKCQHNRSVVVHKFSRLPRVIIIHLKRY 517
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BLAST of mRNA_S-ischiensis_contig95.21045.1 vs. uniprot
Match: A0A0U9HI37_KLENI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HI37_KLENI)

HSP 1 Score: 50.4 bits (119), Expect = 2.150e-5
Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:   34 ERDGGVSVDGLLDFFFRSQNLELTCERCGHDRVRAEHALVGLPGVLVVHIKRFKMKL 204
            E +G  ++  LL+ +F+ + LE TCE+CG      +H +  LP VLV+H+KRF +K+
Sbjct:  250 EANGPPNLQELLELYFKDEPLEKTCEKCGCLTCTVKHRVRRLPRVLVLHMKRFCVKI 306
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig95.21045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUE2_9PHAE5.050e-1566.67USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2P5_ECTSI1.760e-1469.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A7RGC9_NEMVE1.760e-642.86Predicted protein n=3 Tax=Nematostella vectensis T... [more]
UPI00192387112.400e-643.75ubiquitin carboxyl-terminal hydrolase 26 n=1 Tax=H... [more]
UPI001B888D972.410e-640.43ubiquitin carboxyl-terminal hydrolase 37-like isof... [more]
A0A7S2G917_9STRA6.770e-649.02Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A261Y2X6_9FUNG8.430e-647.922-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
UPI001E1E10DE1.160e-538.30ubiquitin carboxyl-terminal hydrolase 37-like n=1 ... [more]
UPI0004ED39C81.570e-539.58ubiquitin carboxyl-terminal hydrolase 26 n=1 Tax=N... [more]
A0A0U9HI37_KLENI2.150e-540.35Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Kleb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig95contigS-ischiensis_contig95:108122..109229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue4.1e-12
Seed eggNOG ortholog2880.D7G2P5
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs2EX8U@1,2SYYR@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-11_002980.1
Exons2
Model size227
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817427.8508267-CDS-S-ischiensis_contig95:108122..1082571622817427.8508267-CDS-S-ischiensis_contig95:108122..108257Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 108123..108257 -
1695741107.6833348-CDS-S-ischiensis_contig95:108122..1082571695741107.6833348-CDS-S-ischiensis_contig95:108122..108257Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 108123..108257 -
1622817427.8688436-CDS-S-ischiensis_contig95:109139..1092291622817427.8688436-CDS-S-ischiensis_contig95:109139..109229Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 109140..109229 -
1695741107.6954312-CDS-S-ischiensis_contig95:109139..1092291695741107.6954312-CDS-S-ischiensis_contig95:109139..109229Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 109140..109229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig95.21045.1prot_S-ischiensis_contig95.21045.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig95 108123..109229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig95.21045.1

>prot_S-ischiensis_contig95.21045.1 ID=prot_S-ischiensis_contig95.21045.1|Name=mRNA_S-ischiensis_contig95.21045.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=75bp
SRGGGNAAGSSERDGGVSVDGLLDFFFRSQNLELTCERCGHDRVRAEHAL
VGLPGVLVVHIKRFKMKLPRAPCPP
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mRNA from alignment at S-ischiensis_contig95:108122..109229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig95.21045.1 ID=mRNA_S-ischiensis_contig95.21045.1|Name=mRNA_S-ischiensis_contig95.21045.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1108bp|location=Sequence derived from alignment at S-ischiensis_contig95:108122..109229- (Schizocladia ischiensis KU_0333)
AGTAGAGGAGGCGGCAATGCGGCCGGGTCAAGCGAAAGAGATGGCGGTGT
GAGCGTGGACGGCCTACTTGACTTCTTTTTCAGGTCACAGGTGCGCCGTG
GGGCAGGCAGCCCCGAGCAGACCCCCACTCCCCCACCAGCAAGGAGAGGT
TGGCTGTAGCCAGCCTCCCCAACAACAGAGGACTCAGTGGTTCGTCCCGT
ACGGTCACCCCTGTGGGATGCGTGGTCAATGGCCATATGTCTTCGGCAGG
CAACTCATGAGTACACCCCCCACACATAACACGCGCGCGCATTTGAGCCA
CACATGTCGAGGGCCCAACTGTTGCGAAATGAACACTGGGCACAAGCAAA
GTGCATGCCGAAAACCATGGCTGGAATACCAACCACCCGTAGCTGCCATC
TGTAGTGATTTGAGTACTTCGAAGTACATGTTAGCGAGGTGCAGTCTCAC
GTGTGTGAAATTGAGAGCGCTCACTGAAACGAAGGATTGATTGATGGCAG
TGATTCAACTGGTCATTGCCCTATGCATGCATTTACAAAAAGCACAAACT
TGGCCATCTGTATCCGCCATTGAAACGGTTGCCGGCACTCGCCGGGACCG
TAAACGCCTCCAGCAAGCTGTTGCCTGCAACTGTCGGGACCATGAACACC
TCCTGCAACTCCGGTCCGTGACCTCTGGGCGTTCGTGACCGCCTCCTGCA
ACTGCCCCCGCAACCACCCTGCCGGGAAACCTCCCTTGACCCCGAGGGGA
TGACGGTGCACAAGTAGAGCTCTGCTGTGGTCAAGTGTGCCGTCGTAACA
AAATCCTACTGTACTGTACCTGCTGTAGCTAGTGCACTATACCACAGTCC
TCTACGCGTTCTCCCAAGTACTTCCAAGCACCTGCCAACCGTGGGATACG
GCCTCCTCCATCCTTAATCCCCCCGGGCCCGGCGAAAACAAAACCAACAC
CATAACCCAAACTACAACCCAGAACCTCGAGCTCACCTGCGAGCGGTGCG
GCCACGACCGCGTCCGGGCCGAGCACGCCCTGGTGGGCCTCCCCGGGGTG
CTGGTGGTCCACATCAAGCGCTTCAAGATGAAACTGCCAAGGGCTCCGTG
CCCCCCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig95:108122..109229-

>mRNA_S-ischiensis_contig95.21045.1 ID=mRNA_S-ischiensis_contig95.21045.1|Name=mRNA_S-ischiensis_contig95.21045.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=450bp|location=Sequence derived from alignment at S-ischiensis_contig95:108122..109229- (Schizocladia ischiensis KU_0333)
AGTAGAGGAGGCGGCAATGCGGCCGGGTCAAGCGAAAGAGATGGCGGTGT
GAGCGTGGACGGCCTACTTGACTTCTTTTTCAGGTCACAGAGTAGAGGAG
GCGGCAATGCGGCCGGGTCAAGCGAAAGAGATGGCGGTGTGAGCGTGGAC
GGCCTACTTGACTTCTTTTTCAGGTCACAGAACCTCGAGCTCACCTGCGA
GCGGTGCGGCCACGACCGCGTCCGGGCCGAGCACGCCCTGGTGGGCCTCC
CCGGGGTGCTGGTGGTCCACATCAAGCGCTTCAAGATGAAACTGCCAAGG
GCTCCGTGCCCCCCAAACCTCGAGCTCACCTGCGAGCGGTGCGGCCACGA
CCGCGTCCGGGCCGAGCACGCCCTGGTGGGCCTCCCCGGGGTGCTGGTGG
TCCACATCAAGCGCTTCAAGATGAAACTGCCAAGGGCTCCGTGCCCCCCA
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