mRNA_S-ischiensis_contig93.20960.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig93.20960.1
Unique NamemRNA_S-ischiensis_contig93.20960.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig93.20960.1 vs. uniprot
Match: F0YQI3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQI3_AURAN)

HSP 1 Score: 75.5 bits (184), Expect = 5.920e-14
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 RVQWLGHVAIARYDEQNYQGWEQLGVPKAVETEDGMPLEMGAVIREVLKPDQHITVTPSL 180
            RV+WLGHV IARYD++ YQGW+QLGVP  +   DG+ L+ GAV+REVL     + V+ SL
Sbjct:   21 RVKWLGHVGIARYDDKTYQGWKQLGVPTKITKADGVELDPGAVVREVLNDGDTVYVSHSL 80
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BLAST of mRNA_S-ischiensis_contig93.20960.1 vs. uniprot
Match: A0A067BVS8_SAPPC (Par3_HAL_N_term domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BVS8_SAPPC)

HSP 1 Score: 66.2 bits (160), Expect = 1.910e-10
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 RVQWLGHVAIARYDEQNYQGWEQLGVPKAVETEDGMPLEMGAVIREVLKPDQHITVTPS 177
            RVQWLGHV IARYDE++ QGW QLG P  + +  G+  +   VI EVL+   H+ V P+
Sbjct:   34 RVQWLGHVGIARYDEEHLQGWLQLGKPAKITSSTGVAFQANDVICEVLQDKDHVYVEPT 92
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BLAST of mRNA_S-ischiensis_contig93.20960.1 vs. uniprot
Match: A0A1V9YEV3_9STRA (Par3_HAL_N_term domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEV3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.980e-10
Identity = 32/59 (54.24%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    1 RVQWLGHVAIARYDEQNYQGWEQLGVPKAVETEDGMPLEMGAVIREVLKPDQHITVTPS 177
            R+QWLGHV IARYDE   QGW QLG P  + T  G  L    VI EVL   +H+ V PS
Sbjct:   37 RIQWLGHVGIARYDETRLQGWLQLGQPVKITTSAGTLLNASDVICEVLHDKEHVYVEPS 95
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BLAST of mRNA_S-ischiensis_contig93.20960.1 vs. uniprot
Match: L8GF08_ACACA (Par3_HAL_N_term domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GF08_ACACA)

HSP 1 Score: 63.5 bits (153), Expect = 1.470e-9
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 RVQWLGHVAIARYDEQNYQGWEQLGVPKAVETEDGMPLEMGAVIREVLKPDQHITV 168
            R++WLGHV IARYD  N  G E LG PKA++ EDG  L+M  ++R+VLK D H+ V
Sbjct:   22 RLKWLGHVGIARYDNNN--GME-LGTPKAIKGEDGSVLDMNGIVRDVLKEDAHVWV 74
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BLAST of mRNA_S-ischiensis_contig93.20960.1 vs. uniprot
Match: A0A6V1NFB1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NFB1_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 3.040e-8
Identity = 21/60 (35.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    4 VQWLGHVAIARYDEQNYQGWEQLGVPKAVETEDGMPLEMGAVIREVLKPDQHITVTPSLS 183
            ++W GHVAIAR+D+++++GW+ LGVP ++   +G  L+  + I+++ +  +H++V  S++
Sbjct:   56 IKWAGHVAIARWDDRDFEGWKTLGVPTSISKANGETLDFNSTIKDICESGEHLSVETSMN 115
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BLAST of mRNA_S-ischiensis_contig93.20960.1 vs. uniprot
Match: A0A024UE70_9STRA (Par3_HAL_N_term domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UE70_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 6.890e-8
Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 1 
Query:    1 RVQWLGHVAIARYDEQNYQGWEQLGVPKAVETEDGMPLEMGAVIREVLKPDQHITVTPS 177
            R++WLGHV IARYD  N QGW Q G P AV    G  L M  +I EVL    H+ +  S
Sbjct:   22 RLEWLGHVGIARYDPINVQGWMQFGRPVAVRNAKGAALAMTDIICEVLLDKDHVYIDTS 80
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BLAST of mRNA_S-ischiensis_contig93.20960.1 vs. uniprot
Match: A0A1V9ZIU8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZIU8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.190e-7
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    4 VQWLGHVAIARYDEQNYQGWEQLGVPKAVETEDGMPLEMGAVIREVLKPDQHITVTPS 177
            +QWLG V IARYDEQN QGW QLG P  +    G+ L     I EVL+  +H+ +  S
Sbjct:   19 IQWLGFVGIARYDEQNLQGWLQLGKPLKILLSSGVVLNNTDAICEVLQDKEHVYIETS 76
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BLAST of mRNA_S-ischiensis_contig93.20960.1 vs. uniprot
Match: A0A8K1FLK4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLK4_PYTOL)

HSP 1 Score: 58.9 bits (141), Expect = 1.330e-7
Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 RVQWLGHVAIARYDEQNYQGWEQLGVPKAVETEDGMPLEMGAVIREVLKPDQHITVTPSL 180
            +V W+GHVAIARYDE+N +GW  LGVP  +  +    L+M  ++ +V++   H+ +T S+
Sbjct:   50 QVIWIGHVAIARYDEENNEGWRTLGVPMKIVKDGKEELKMTDILCDVVQNHSHVYITTSM 109
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BLAST of mRNA_S-ischiensis_contig93.20960.1 vs. uniprot
Match: A0A5D6Y4E6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4E6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.750e-7
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    1 RVQWLGHVAIARYDEQNYQGWEQLGVPKAVETEDG---MPLEMGAVIREVLKPDQHITVTPSL 180
            +V W+GHVAIARYDE+  QGW +LGVP  +    G    PL++  +I +VL+ + H+ ++ SL
Sbjct:   74 QVVWIGHVAIARYDEERRQGWLELGVPTKITKTSGKHEQPLQLTDLICDVLQHNTHVYISSSL 136
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BLAST of mRNA_S-ischiensis_contig93.20960.1 vs. uniprot
Match: A0A2D4BQP1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQP1_PYTIN)

HSP 1 Score: 57.0 bits (136), Expect = 1.190e-6
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:    1 RVQWLGHVAIARYDEQNYQGWEQLGVPKAVETEDGMPLEMGAVIREVLKPDQHITVTPSL 180
            +V WLGHVAIARYDE+ ++GW  LGVP  +  +    L    +I +VL    H+ +T SL
Sbjct:   76 QVAWLGHVAIARYDERRHEGWRTLGVPTQLLRDGKHALRFTDLICDVLPTQSHVYLTTSL 135
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig93.20960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
F0YQI3_AURAN5.920e-1456.67Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A067BVS8_SAPPC1.910e-1050.85Par3_HAL_N_term domain-containing protein n=2 Tax=... [more]
A0A1V9YEV3_9STRA3.980e-1054.24Par3_HAL_N_term domain-containing protein n=1 Tax=... [more]
L8GF08_ACACA1.470e-955.36Par3_HAL_N_term domain-containing protein n=1 Tax=... [more]
A0A6V1NFB1_HETAK3.040e-835.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A024UE70_9STRA6.890e-849.15Par3_HAL_N_term domain-containing protein n=1 Tax=... [more]
A0A1V9ZIU8_9STRA1.190e-748.28Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
A0A8K1FLK4_PYTOL1.330e-741.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6Y4E6_9STRA1.750e-744.44Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4BQP1_PYTIN1.190e-645.00Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig93contigS-ischiensis_contig93:19864..21804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog112098.XP_008618573.1
EggNOG OGs2E078@1,2S7NQ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size814
Cds size189
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig93.20960.1prot_S-ischiensis_contig93.20960.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig93 19864..21181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817420.2906559-CDS-S-ischiensis_contig93:19863..199201622817420.2906559-CDS-S-ischiensis_contig93:19863..19920Schizocladia ischiensis KU_0333CDSS-ischiensis_contig93 19864..19920 +
1695741101.7036889-CDS-S-ischiensis_contig93:19863..199201695741101.7036889-CDS-S-ischiensis_contig93:19863..19920Schizocladia ischiensis KU_0333CDSS-ischiensis_contig93 19864..19920 +
1622817420.303543-CDS-S-ischiensis_contig93:21049..211811622817420.303543-CDS-S-ischiensis_contig93:21049..21181Schizocladia ischiensis KU_0333CDSS-ischiensis_contig93 21050..21181 +
1695741101.7162235-CDS-S-ischiensis_contig93:21049..211811695741101.7162235-CDS-S-ischiensis_contig93:21049..21181Schizocladia ischiensis KU_0333CDSS-ischiensis_contig93 21050..21181 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817420.3164823-UTR-S-ischiensis_contig93:21181..218041622817420.3164823-UTR-S-ischiensis_contig93:21181..21804Schizocladia ischiensis KU_0333UTRS-ischiensis_contig93 21182..21804 +
1695741101.7282462-UTR-S-ischiensis_contig93:21181..218041695741101.7282462-UTR-S-ischiensis_contig93:21181..21804Schizocladia ischiensis KU_0333UTRS-ischiensis_contig93 21182..21804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig93.20960.1

>prot_S-ischiensis_contig93.20960.1 ID=prot_S-ischiensis_contig93.20960.1|Name=mRNA_S-ischiensis_contig93.20960.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=63bp
RVQWLGHVAIARYDEQNYQGWEQLGVPKAVETEDGMPLEMGAVIREVLKP
DQHITVTPSLSD*
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mRNA from alignment at S-ischiensis_contig93:19864..21804+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig93.20960.1 ID=mRNA_S-ischiensis_contig93.20960.1|Name=mRNA_S-ischiensis_contig93.20960.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1941bp|location=Sequence derived from alignment at S-ischiensis_contig93:19864..21804+ (Schizocladia ischiensis KU_0333)
AGGGTGCAGTGGCTGGGGCACGTGGCGATTGCCCGATACGACGAGCAGAA
TTATCAGGTTAGATGGTGACCCGCACCCCTGTCGGCTGCGTGCTGTCAAC
CAATTGCCAAAGTTTCAACTTGTCATCATACAATTGTAGGTTATAGTGAT
GAATACGCAGTTGCTCTGTGGTGCAAAAACACATGGCCAAGTACTACAGC
AATAGTGGATTGTGGCACAGCACACTGCGCGGCCACAAGTATGCTGAACC
AAGTCTTGTGGCGCCTCTACGTGATTGTACAGTGCGCCGCTGTGGATGCC
CCCGAAGGATTGACATTTGTAGAGGTCGTGGCTGTTGCTTCTTCTCGTAT
CACGGTAGCATGCCCTACTCCAAATGCTTCTACTGTAGTGAAGAATTAGC
GTACCGACCTTGTACAAGGCTTTAAGTACACCCTCAGAGAGGTGGATCGC
TCACATCCTTGGTAAGGTCCACCTATTGCGAGTGTGCTCCTGCCACTGCT
ACTGCTAGTACTGTAAGCACCGTCATCTAAGTACTCATACTTCACCGCCG
TACTACAGTATATAATACGGGCACAAGTACTACTGTACTTTCTCCAGAAG
CACTCTATTAGTGCTGCTGCTGCAAGTATATTTTGCACTGCCACCACTGC
TGCTGTAGCTCTTTTTACTCGAGCACTGCTATCTGTTTCCCAGTGTGCGC
TACTGATGCTGCCGCCGCCGCCGCCGCTGCTGCTGCTGCTGCTCTCCTAC
TCGTACTATGAGTACTGCTACTACCACTACTGTACAGTAGAGTAGTTTGT
ACTTCGAAGCAAGTCCGGCAACGTCTAGCGCAGGCGCTTCACCCCCGCGC
CACACTGCAATAGCACAACCAGCCATGTGCACCACTACTAGCAGCGCACA
AATTTCCCCTGGCGAGCTATTAGGAAGGGCCACTGCTGAGGTCTTTAGTG
ACGTGGCCTGCACCTGGCCCTATGTTGTTCCTGTCAATACATTGTACGAG
TACCAGAATAGCAGAGCGGCAGCACTATGAGTACATACTGCACGCCGCTT
CATCGGAGCTCGTGTACACCCCTGCTCGCATGGGGTTGCACCCGCCGGTA
CGGCCGTACTCCCAAGTCTGCATGCCCACCCCGGCATCTTGTGTTCTGCC
GCAACACACGCGTGCGCCATCCATGGCCTCTGTTAGGGGTGGGAGCAGCT
GGGCGTGCCCAAGGCGGTGGAGACGGAGGACGGGATGCCTCTGGAGATGG
GGGCGGTCATCCGAGAGGTTCTCAAGCCCGACCAGCACATCACAGTGACG
CCCTCCCTCTCCGACTAAATACCTCTGTTATCTGTGGACGGAGGAGGGGC
CGCCCGGAGCTGTAGATGGGGGCGGGAGATCCTCAGTATTGACCAGCAAG
CTACAGTTACGCCCTCCCTCTCTGACTGGCTTCCAAGGAGGAAAGACCTC
TGTTATCCGTGGACGGAGGAGGGGGTGCCCGGAGCTGGACATGGGGGCGG
GAGGCGCTCAGTAGCGACGAGCGCAACACAGTTCAACGCTCCTTTTGGGA
GGACATAGGGTTAGGGTTAGGGTAAACCTAACCCTAACCCTACCCTAGGA
ATGACTGCCCAGGGCTGGACTGCTTAGGGTTGGGGGGGGGTCCCCAAGAC
CCCTTCACCCTTGGGGAAACCCTGTTAGCTGTGGGGTGGAGGATGGGCTC
CCCTGGAGGCTGGGCGCGTGGGCGGTCATGCCGGGGGTCCCCGTGCGATG
CGATGCGGTTTGATGTGACGCGCGTTCCAAGCAATGTGCGAGCTACTGCA
CAGTAGTATTGTCAGAACAGCGGGGATGGAAGTCTGATGTGATGTGACGC
GCATTCTAAGCAATGTGCGAGCTTCTGTACAGTAGTTTTGTCGGAACGGT
GGGGATGGTCGGTCACATGGGGCTTGTGCCCGGCACTCGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig93:19864..21804+

>mRNA_S-ischiensis_contig93.20960.1 ID=mRNA_S-ischiensis_contig93.20960.1|Name=mRNA_S-ischiensis_contig93.20960.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=378bp|location=Sequence derived from alignment at S-ischiensis_contig93:19864..21804+ (Schizocladia ischiensis KU_0333)
AGGGTGCAGTGGCTGGGGCACGTGGCGATTGCCCGATACGACGAGCAGAA
TTATCAGAGGGTGCAGTGGCTGGGGCACGTGGCGATTGCCCGATACGACG
AGCAGAATTATCAGGGGTGGGAGCAGCTGGGCGTGCCCAAGGCGGTGGAG
ACGGAGGACGGGATGCCTCTGGAGATGGGGGCGGTCATCCGAGAGGTTCT
CAAGCCCGACCAGCACATCACAGTGACGCCCTCCCTCTCCGACTAAGGGT
GGGAGCAGCTGGGCGTGCCCAAGGCGGTGGAGACGGAGGACGGGATGCCT
CTGGAGATGGGGGCGGTCATCCGAGAGGTTCTCAAGCCCGACCAGCACAT
CACAGTGACGCCCTCCCTCTCCGACTAA
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