mRNA_S-ischiensis_contig91.20924.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20924.1
Unique NamemRNA_S-ischiensis_contig91.20924.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:453206..455348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size507
Cds size507
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20924.1prot_S-ischiensis_contig91.20924.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 453206..455348 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.4124699-CDS-S-ischiensis_contig91:453205..4533751622817412.4124699-CDS-S-ischiensis_contig91:453205..453375Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 453206..453375 -
1695741095.6552129-CDS-S-ischiensis_contig91:453205..4533751695741095.6552129-CDS-S-ischiensis_contig91:453205..453375Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 453206..453375 -
1622817412.426783-CDS-S-ischiensis_contig91:453766..4539581622817412.426783-CDS-S-ischiensis_contig91:453766..453958Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 453767..453958 -
1695741095.6697588-CDS-S-ischiensis_contig91:453766..4539581695741095.6697588-CDS-S-ischiensis_contig91:453766..453958Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 453767..453958 -
1622817412.4375827-CDS-S-ischiensis_contig91:455203..4553481622817412.4375827-CDS-S-ischiensis_contig91:455203..455348Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 455204..455348 -
1695741095.6856225-CDS-S-ischiensis_contig91:455203..4553481695741095.6856225-CDS-S-ischiensis_contig91:455203..455348Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 455204..455348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20924.1

>prot_S-ischiensis_contig91.20924.1 ID=prot_S-ischiensis_contig91.20924.1|Name=mRNA_S-ischiensis_contig91.20924.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=169bp
LCRPLNNRPVCAHSAEACPCRPTNLNPAVCAHWAGPVHQLVAAARVHAVA
QMAKSIGAKGKAKRKKVSKHMQEAAERRKAAITSAPLAAPTSALGPVKSA
KRKGKAGEAAGPDSDLGQGAASSAAAAAAATAAAAAAGRRDAAAGRAYLL
AWERHQKACTVHASGGGAG
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mRNA from alignment at S-ischiensis_contig91:453206..455348-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20924.1 ID=mRNA_S-ischiensis_contig91.20924.1|Name=mRNA_S-ischiensis_contig91.20924.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2143bp|location=Sequence derived from alignment at S-ischiensis_contig91:453206..455348- (Schizocladia ischiensis KU_0333)
CTCTGCCGGCCTCTCAACAACAGGCCCGTGTGTGCCCACTCCGCTGAAGC
CTGTCCCTGCCGTCCCACCAACCTGAACCCTGCCGTGTGTGCTCACTGGG
CGGGGCCTGTCCACCAGCTTGTAGCAGCTGCGCGCGTCCACGCAGGTACG
CGCTGGTCAGCTGCCCTGTGCTGCGCCGCCGCCCTGCCTGCCCGCCTGCC
GCCCCCTCCCCCCCTTCCCTCCCCCCTCCCCTGCACCCACAACCCCAGCC
CTCACTTCTCCGAGCCTTCCTAAGCCCCCCCTCTCGCTTCGCTGGAGTCC
AGTCCCTGCTGCCTTGCGAGTAGAGGAAGGCCCACTGCAGAACTGGCCTG
CCGTGCCGTGGTCCAACCTCGAGTGTTTCTTTACAACACTGTAGGATGGG
GGTTGACCCGTCAACCCTCTTCCGACTTGAGTACATACACACAGACACAC
ACACCACACACACACACACACACACACAGAGTGCTGTGCGGTAGCTCTAA
CGCCACCACCGGCCCGATTTTGAACTGTCTCCCGGGAATGTCCACACTAC
AAATTTAATGTCCCGGGCCAAATCCTACTGTACAACAGAGCGTCAGCAGT
GGCCCTCTGTGGTTCGCAAGGCTGTGCTATATGTTGATGTGTGGCAAATG
TGTACTCGAACGTACTGTAGTCAGTGGTTGCCAGACACCCGGAAGTAGCG
GGGCGCCAGCGCGCACGGCGACCCCCATGGGCACATCGGGGCGGGGCGCA
CCAACCCGATATGCGACACCGCGGGGCGCGCTTGAGCCCGCAGGGCGAAA
TTTGGGGCGCTCCACTAGGTAAAGGGGCTCCTGGGGGTGCAACGTGCATT
TCTGGGGGCGCCTGCGGCGCCCCAGCTCCCTCTTTTCTGGGGCGCGTTTG
GCCAAAATTCCGATATTTGGGACGCCGCGCCCCGAGACACCTTGTTGTGG
CAAACGCTGCCTGTAGTTTTCCATCGCACCACCTCACAAAACAGAGTGTG
TACTGTAACACTTGTGCTATCGGTGACCACTGCAAAACTTGTACTATCGG
TGACTACCGTAGAACTTGTATTATCACCGCGTGGGTACAGATATATATAT
AGTATCGTTGACTACTCTTCGCCCCTTCCCCACACAAATATCCCCTGGCG
AGCTATAAGGAAGGGCCACTGCTGAGGTCTCTACTGTAGTGATGTGGCCT
GCGCCTCACCCCGCGTCGTTAGTACTGTAAAACTTGTACTATCGGTGACT
ACTGCCAAAGTTGTATCATCGGTGACTACTGTACTGCAAAACTTGTACTA
TCGGTGACTGCTGTAAACTTGCACTATCGGTGACTAGTGTTACACCTGTG
CTGTGCTGTGTTGCCGCTGTGTGCGCGTGCGTATCTACAGTGGCACAGAT
GGCGAAAAGCATAGGGGCCAAAGGGAAGGCCAAGCGCAAGAAGGTGTCCA
AGCACATGCAGGAGGCCGCAGAGAGGCGCAAGGCGGCCATCACCAGCGCG
CCGTTGGCCGCGCCCACGAGTGCGCTCGGGCCCGTGAAGAGCGCCAAACG
GAAGGGGAAGGCCGGAGAAGCGGCAGGGCCAGGTGCGTCGGACACGGTAG
TTCCTGCGCAGGGTTGGCACTTAGATGGTAGTTAGGGCCTAATTAGCCTT
CATTTTAGGTCTAATTGCAGTGCCCATATTTACCTCTACTGTAATTAAGG
GCATAGAAGGGCACCGCTTGTAGGGGTTAAGTGCTGACCCTGTTCCTGCG
TGCTTTTGTTCTCGCTCGTCACAATTTGTGTGAATCACCCCTACCCTCTC
CCCCGCTCGTCCCTCCACAATGCCTACAAAACAGATTGTGAGCCTGGACA
AGGTATCGCTAGTTCCATATAACAACCAATACGAGATCTCGTAACACTCC
ATCTCACACGCGTGCGATTGTACCTCGTTACAATCTACGAGTACATGAAT
CACCGCCCACACCCACAAAACAGATTCTGATCTCGGACAAGGTGCCGCCA
GTTCTGCGGCAGCCGCGGCGGCCGCGACGGCGGCGGCGGCGGCCGCCGGC
CGCAGAGACGCCGCCGCCGGCAGAGCCTACCTCTTGGCATGGGAGCGCCA
CCAGAAGGCGTGTACGGTGCACGCCTCCGGAGGTGGGGCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig91:453206..455348-

>mRNA_S-ischiensis_contig91.20924.1 ID=mRNA_S-ischiensis_contig91.20924.1|Name=mRNA_S-ischiensis_contig91.20924.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1014bp|location=Sequence derived from alignment at S-ischiensis_contig91:453206..455348- (Schizocladia ischiensis KU_0333)
CTCTGCCGGCCTCTCAACAACAGGCCCGTGTGTGCCCACTCCGCTGAAGC
CTGTCCCTGCCGTCCCACCAACCTGAACCCTGCCGTGTGTGCTCACTGGG
CGGGGCCTGTCCACCAGCTTGTAGCAGCTGCGCGCGTCCACGCAGCTCTG
CCGGCCTCTCAACAACAGGCCCGTGTGTGCCCACTCCGCTGAAGCCTGTC
CCTGCCGTCCCACCAACCTGAACCCTGCCGTGTGTGCTCACTGGGCGGGG
CCTGTCCACCAGCTTGTAGCAGCTGCGCGCGTCCACGCAGTGGCACAGAT
GGCGAAAAGCATAGGGGCCAAAGGGAAGGCCAAGCGCAAGAAGGTGTCCA
AGCACATGCAGGAGGCCGCAGAGAGGCGCAAGGCGGCCATCACCAGCGCG
CCGTTGGCCGCGCCCACGAGTGCGCTCGGGCCCGTGAAGAGCGCCAAACG
GAAGGGGAAGGCCGGAGAAGCGGCAGGGCCAGTGGCACAGATGGCGAAAA
GCATAGGGGCCAAAGGGAAGGCCAAGCGCAAGAAGGTGTCCAAGCACATG
CAGGAGGCCGCAGAGAGGCGCAAGGCGGCCATCACCAGCGCGCCGTTGGC
CGCGCCCACGAGTGCGCTCGGGCCCGTGAAGAGCGCCAAACGGAAGGGGA
AGGCCGGAGAAGCGGCAGGGCCAGATTCTGATCTCGGACAAGGTGCCGCC
AGTTCTGCGGCAGCCGCGGCGGCCGCGACGGCGGCGGCGGCGGCCGCCGG
CCGCAGAGACGCCGCCGCCGGCAGAGCCTACCTCTTGGCATGGGAGCGCC
ACCAGAAGGCGTGTACGGTGCACGCCTCCGGAGGTGGGGCGGGGATTCTG
ATCTCGGACAAGGTGCCGCCAGTTCTGCGGCAGCCGCGGCGGCCGCGACG
GCGGCGGCGGCGGCCGCCGGCCGCAGAGACGCCGCCGCCGGCAGAGCCTA
CCTCTTGGCATGGGAGCGCCACCAGAAGGCGTGTACGGTGCACGCCTCCG
GAGGTGGGGCGGGG
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