mRNA_S-ischiensis_contig91.20920.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20920.1
Unique NamemRNA_S-ischiensis_contig91.20920.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig91.20920.1 vs. uniprot
Match: A0A8K1FDU3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDU3_PYTOL)

HSP 1 Score: 79.7 bits (195), Expect = 1.620e-15
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:   52 EANKGEAEKCRDIAKTFLRKGEHAKAVKFFAKSLQLYPLPGVEALLHRAQEELDKP-----TASNGSPHTQQSARGGG 270
            E NKGEAEKCRDIAK FLR+G++A+A+KFF KS ++YPLPGVEA+  RA+ EL K      T+S+G   +   A G G
Sbjct:    2 EMNKGEAEKCRDIAKRFLREGKYAQAIKFFEKSHRMYPLPGVEAMCDRAKVELAKEQGGASTSSSGHASSTHPADGAG 79
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BLAST of mRNA_S-ischiensis_contig91.20920.1 vs. uniprot
Match: A0A662XJ06_9STRA (J domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XJ06_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.160e-15
Identity = 44/74 (59.46%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:   52 EANKGEAEKCRDIAKTFLRKGEHAKAVKFFAKSLQLYPLPGVEALLHRAQEELDKPTASNGSPHTQQSARGGGG 273
            E NKGEAEKCR+I K  LR G  A+A+KFF KS +++PLPGVEA+  RAQEELDK  A  G    Q S R G G
Sbjct:    2 EMNKGEAEKCREIGKKHLRLGNFAQAIKFFEKSHRMFPLPGVEAMRDRAQEELDKAAAPRGQ---QTSPRAGAG 72
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BLAST of mRNA_S-ischiensis_contig91.20920.1 vs. uniprot
Match: A0A662XD70_9STRA (J domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XD70_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.360e-15
Identity = 45/74 (60.81%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   52 EANKGEAEKCRDIAKTFLRKGEHAKAVKFFAKSLQLYPLPGVEALLHRAQEELDKPTASNGSPHTQQSARGGGG 273
            E NKGEAEKCR+I K  LR G  A+AVKFF KS +++PLPGVEA+  RAQEELDK +A  G    Q S R G G
Sbjct:    2 EMNKGEAEKCREIGKKHLRLGNFAQAVKFFDKSHRMFPLPGVEAMRDRAQEELDKASAPRGQ---QTSPRAGAG 72
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BLAST of mRNA_S-ischiensis_contig91.20920.1 vs. uniprot
Match: A0A7S3GR06_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GR06_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.050e-14
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   58 NKGEAEKCRDIAKTFLRKGEHAKAVKFFAKSLQLYPLPGVEALLHRAQEELDKPTASNGS 237
            N+GEAEKCRDIAK FL KGE+AKA KFF KSL+L+PL GV+AL  +A     +P  S+ S
Sbjct:    1 NQGEAEKCRDIAKAFLSKGEYAKASKFFEKSLRLFPLAGVKALKEKADRLAAEPPPSSSS 60
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BLAST of mRNA_S-ischiensis_contig91.20920.1 vs. uniprot
Match: A0A2D4C5Y2_PYTIN (DnaJ subfamily B protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5Y2_PYTIN)

HSP 1 Score: 75.9 bits (185), Expect = 3.990e-14
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   52 EANKGEAEKCRDIAKTFLRKGEHAKAVKFFAKSLQLYPLPGVEALLHRAQEELDK 216
            E NKGEAE+CRD+AK FLR+G + +A+KFF KS ++YPLPGVEA+  RA+ EL K
Sbjct:    2 EMNKGEAERCRDVAKKFLREGRYQQAIKFFEKSHRMYPLPGVEAMCERARAELAK 56
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BLAST of mRNA_S-ischiensis_contig91.20920.1 vs. uniprot
Match: A0A2D4C3Q5_PYTIN (DnaJ subfamily B protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C3Q5_PYTIN)

HSP 1 Score: 75.9 bits (185), Expect = 5.140e-14
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   52 EANKGEAEKCRDIAKTFLRKGEHAKAVKFFAKSLQLYPLPGVEALLHRAQEELDK 216
            E NKGEAE+CRD+AK FLR+G + +A+KFF KS ++YPLPGVEA+  RA+ EL K
Sbjct:    2 EMNKGEAERCRDVAKKFLREGRYQQAIKFFEKSHRMYPLPGVEAMCERARAELAK 56
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BLAST of mRNA_S-ischiensis_contig91.20920.1 vs. uniprot
Match: A0A7S2UNV9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UNV9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.940e-14
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   52 EANKGEAEKCRDIAKTFLRKGEHAKAVKFFAKSLQLYPLPGVEALLHRAQEELDKPTASNGSP 240
            E NKGEAEKCRDI    LRKGE  +AVKF  KSL+LYPLPGV+ALL +A+    + ++S G+P
Sbjct:    2 EVNKGEAEKCRDIGGEALRKGELDRAVKFLGKSLRLYPLPGVKALLSQAERRKTEASSSTGTP 64
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BLAST of mRNA_S-ischiensis_contig91.20920.1 vs. uniprot
Match: A0A6H5JQ06_9PHAE (HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ06_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.320e-13
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   55 ANKGEAEKCRDIAKTFLRKGEHAKAVKFFAKSLQLYPLPGVEALLHRAQEELDK 216
            ANK EAEKCRD+A  FL++GEH KAV+FF KSL+LYPLPGVE+LL  A+ + ++
Sbjct:    6 ANKDEAEKCRDLAAKFLQQGEHGKAVRFFEKSLRLYPLPGVESLLDLAKSKQEE 59
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BLAST of mRNA_S-ischiensis_contig91.20920.1 vs. uniprot
Match: D8LBV6_ECTSI (Heat shock protein 40 like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV6_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.980e-13
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   55 ANKGEAEKCRDIAKTFLRKGEHAKAVKFFAKSLQLYPLPGVEALLHRAQEELDKP 219
            ANK EAEKCRD+A  FL++GEH KAV+FF KSL+LYPLPGVE+LL  A+     P
Sbjct:    6 ANKDEAEKCRDLAAKFLQQGEHGKAVRFFEKSLRLYPLPGVESLLDLAKRRQAGP 60
[Close]
BLAST of mRNA_S-ischiensis_contig91.20920.1 vs. uniprot
Match: A0A7S3LZ89_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZ89_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 7.840e-13
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   58 NKGEAEKCRDIAKTFLRKGEHAKAVKFFAKSLQLYPLPGVEALLHRAQEELDKPTASNGS 237
            N+GEAEKCRDIAK FL KGE+AKA KFF KSL+L+PL GV+AL  +A     +P  S+ S
Sbjct:    1 NQGEAEKCRDIAKAFLSKGEYAKASKFFEKSLRLFPLAGVKALKEKADRLAAEPPPSSSS 60
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A8K1FDU3_PYTOL1.620e-1556.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662XJ06_9STRA2.160e-1559.46J domain-containing protein n=1 Tax=Nothophytophth... [more]
A0A662XD70_9STRA2.360e-1560.81J domain-containing protein n=1 Tax=Nothophytophth... [more]
A0A7S3GR06_9STRA2.050e-1461.67Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2D4C5Y2_PYTIN3.990e-1463.64DnaJ subfamily B protein n=1 Tax=Pythium insidiosu... [more]
A0A2D4C3Q5_PYTIN5.140e-1463.64DnaJ subfamily B protein n=1 Tax=Pythium insidiosu... [more]
A0A7S2UNV9_9STRA8.940e-1460.32Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6H5JQ06_9PHAE2.320e-1364.81HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D8LBV6_ECTSI3.980e-1365.45Heat shock protein 40 like protein n=1 Tax=Ectocar... [more]
A0A7S3LZ89_9STRA7.840e-1361.67Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:380811..382212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.9e-14
Seed eggNOG ortholog42099.EPrPV00000014767
KEGG koko:K09518
KEGG Pathwayko04141,map04141
EggNOG free text desc.DnaJ subfamily B protein. Source PGD
EggNOG OGs1MAWH@121069,COG0484@1,KOG0714@2759
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817415.3247135-CDS-S-ischiensis_contig91:380810..3808941622817415.3247135-CDS-S-ischiensis_contig91:380810..380894Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 380811..380894 -
1695741097.8589468-CDS-S-ischiensis_contig91:380810..3808941695741097.8589468-CDS-S-ischiensis_contig91:380810..380894Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 380811..380894 -
1622817415.338378-CDS-S-ischiensis_contig91:382011..3822121622817415.338378-CDS-S-ischiensis_contig91:382011..382212Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 382012..382212 -
1695741097.8708131-CDS-S-ischiensis_contig91:382011..3822121695741097.8708131-CDS-S-ischiensis_contig91:382011..382212Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 382012..382212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20920.1prot_S-ischiensis_contig91.20920.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 380811..382212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20920.1

>prot_S-ischiensis_contig91.20920.1 ID=prot_S-ischiensis_contig91.20920.1|Name=mRNA_S-ischiensis_contig91.20920.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=95bp
RGAAFAFPPPPGVAAMAEANKGEAEKCRDIAKTFLRKGEHAKAVKFFAKS
LQLYPLPGVEALLHRAQEELDKPTASNGSPHTQQSARGGGGEWEA
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mRNA from alignment at S-ischiensis_contig91:380811..382212-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20920.1 ID=mRNA_S-ischiensis_contig91.20920.1|Name=mRNA_S-ischiensis_contig91.20920.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1402bp|location=Sequence derived from alignment at S-ischiensis_contig91:380811..382212- (Schizocladia ischiensis KU_0333)
AGAGGAGCTGCGTTTGCTTTCCCGCCGCCCCCGGGGGTGGCAGCCATGGC
GGAGGCCAACAAGGGCGAGGCCGAAAAGTGTAGGGACATCGCCAAAACCT
TTTTGCGGAAGGGCGAACACGCCAAGGCGGTCAAGTTCTTCGCCAAGAGC
CTGCAGCTGTACCCGCTGCCTGGGGTCGAAGCGCTATTGCATAGGGCACA
GGTGGGGCCAAGTTGGGCAAACGAGGACGTACGGTGGGGTAAAGGAAGGG
TTTGCAGCAGTGATGTCGATATCAGGGCGGAGGTCGTAGGGATGGGCCCC
TGTCTTGGCCCGCGTGCAGCTGCGTTCGCCCGAGGTCCCCCAATCGGCCG
TGTATTTGTTTCCTGGTTCGGGCTAGCCCTAAGGGCACACGACAGAGACA
GGAGCTTCTGCATGGATACACCCGACCGCACTACGTGACTCCTTGGTATG
TGCTTGAAGCATAGGCACGCACAAAACGAGCTGGTGGAGTCCTGCAAAGG
GTTGCCACTTAAACCCTGAGCGGTGCCCTGTTAGGCCCTTAGTTGGAGGT
ATGTAGGGGTAATTAGACCTAAAAATGAACGCTAATTAGGCCCCAATTAA
CCCCCAAGTGCCAACCCTGGTTCTGCACGGGCAATGGCCCATCCTTCCCC
GCGTTGCCCATATTTGACCCGCCCGATACGCGTGTGCACCAAAGTGGTGG
CGGTTTCCGTTTGTCTTCCGTCCGTTCGCTTTTCCCCGTAGTGTTCGTCG
CGCAGCTCACTCTTGTGTGAAACTTGTGGTGGGCTGCGCTGCTTTGAAAC
TCACGGTTCACAGTAAAATGTGCAAGACATTGGATCCACTTTGGCGGCAA
CCCCCCCCCCCCCCGGGGGGGGGGGGCTGTGCTTCATATAAATTGTAAAG
ACGTACAATCGCACGTGTGTGAGATGGAGTGTTCTAGTATTAGTAGTTGT
CCCATTTAAGAATGGAGTGTTCTTATAATATATTAGTGATTATCAGATCA
AGGAACCAAGAACAAGGAGGGGGGGAAAGGGGGGGGGAAGGGGGGGGGGG
GTCTCTTTGCTCGATTCTAGAGAGGCCAAGTCGCAACTGACGTTCGATGC
ATTTCACTGGATGGCGTATGTGCATGCTCATGGTGCACAACATTGCAGTG
GGGCCTAGAGACCACCACTTACGGTGCGCGCAGCAGCTCAAAGCTGCCCC
CCGGGGGAACCGCAATGTTAGTTTCGGACGGAAAATAGAACGAAGCATTT
TCGTTGTTTCCTCGACCTTGCCCCACCCGCCCGCCCGCTCGCCCGCCCGC
CGCTTCACTCTCTCACAGGAGGAGCTGGACAAGCCGACCGCCTCCAACGG
CAGCCCACACACGCAACAGAGCGCGAGGGGAGGAGGAGGAGAATGGGAAG
CA
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Coding sequence (CDS) from alignment at S-ischiensis_contig91:380811..382212-

>mRNA_S-ischiensis_contig91.20920.1 ID=mRNA_S-ischiensis_contig91.20920.1|Name=mRNA_S-ischiensis_contig91.20920.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=570bp|location=Sequence derived from alignment at S-ischiensis_contig91:380811..382212- (Schizocladia ischiensis KU_0333)
AGAGGAGCTGCGTTTGCTTTCCCGCCGCCCCCGGGGGTGGCAGCCATGGC
GGAGGCCAACAAGGGCGAGGCCGAAAAGTGTAGGGACATCGCCAAAACCT
TTTTGCGGAAGGGCGAACACGCCAAGGCGGTCAAGTTCTTCGCCAAGAGC
CTGCAGCTGTACCCGCTGCCTGGGGTCGAAGCGCTATTGCATAGGGCACA
GAGAGGAGCTGCGTTTGCTTTCCCGCCGCCCCCGGGGGTGGCAGCCATGG
CGGAGGCCAACAAGGGCGAGGCCGAAAAGTGTAGGGACATCGCCAAAACC
TTTTTGCGGAAGGGCGAACACGCCAAGGCGGTCAAGTTCTTCGCCAAGAG
CCTGCAGCTGTACCCGCTGCCTGGGGTCGAAGCGCTATTGCATAGGGCAC
AGGAGGAGCTGGACAAGCCGACCGCCTCCAACGGCAGCCCACACACGCAA
CAGAGCGCGAGGGGAGGAGGAGGAGAATGGGAAGCAGAGGAGCTGGACAA
GCCGACCGCCTCCAACGGCAGCCCACACACGCAACAGAGCGCGAGGGGAG
GAGGAGGAGAATGGGAAGCA
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