mRNA_S-ischiensis_contig91.20917.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20917.1
Unique NamemRNA_S-ischiensis_contig91.20917.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:339991..341019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size380
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.2881715-CDS-S-ischiensis_contig91:339990..3401811622817412.2881715-CDS-S-ischiensis_contig91:339990..340181Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 339991..340181 +
1695741095.5680277-CDS-S-ischiensis_contig91:339990..3401811695741095.5680277-CDS-S-ischiensis_contig91:339990..340181Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 339991..340181 +
1622817412.2988403-CDS-S-ischiensis_contig91:340830..3410171622817412.2988403-CDS-S-ischiensis_contig91:340830..341017Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 340831..341017 +
1695741095.582965-CDS-S-ischiensis_contig91:340830..3410171695741095.582965-CDS-S-ischiensis_contig91:340830..341017Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 340831..341017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20917.1prot_S-ischiensis_contig91.20917.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 339991..341017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20917.1

>prot_S-ischiensis_contig91.20917.1 ID=prot_S-ischiensis_contig91.20917.1|Name=mRNA_S-ischiensis_contig91.20917.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=126bp
GRQRRRWFSGAVAAGVPSSVGSGDGVGPPGEEQAGGLLPGPVDGGVRRTV
KKEEARRQAREAFRDLRLRRERQQKLRGAAAAAVEAGGERAAAPPPPPAA
GVLAAPPAAVGTAAAPPISVKGVRAG
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mRNA from alignment at S-ischiensis_contig91:339991..341019+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20917.1 ID=mRNA_S-ischiensis_contig91.20917.1|Name=mRNA_S-ischiensis_contig91.20917.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1029bp|location=Sequence derived from alignment at S-ischiensis_contig91:339991..341019+ (Schizocladia ischiensis KU_0333)
GGGCGACAGCGGCGCAGATGGTTCAGCGGCGCGGTCGCGGCGGGAGTTCC
CTCCTCCGTGGGTAGTGGTGATGGGGTGGGCCCACCGGGGGAAGAGCAGG
CGGGAGGGCTGCTCCCGGGCCCGGTGGATGGGGGTGTTCGGAGGACGGTA
AAGAAGGAAGAGGCCCGGAGACAGGCCCGTGAGGCCTTCAGGTGGGTTTG
CTGGGGGATGGGGTGGCATGTGCATTGTGTGTGTGTCAATGGCTTTGGTT
TACAGTACAGTAGTGCCCCCGCAATGACACTCTGGTATGCCTGCTGTACA
ACAGTGTAGTGAGGGTTACTGCCATGGTGCTCTGTCATGCCTTGGCCGAG
GCGGGCGGTCGATGGTCTCGGGACTATGGCAATCACAATGCGCACGCACG
CACGCACGCATAGTACGAGTAATTCCAAGCACATGTACATGCGCGGTGCC
AAAGTACCTATGTCAAGCTTGCAGTGCTTCGAAGTGCTGTAGTAGATCCG
AGGTTCCAAGCTCCTGCACGAGCTGTTCCTCATGTGGTACGAGCACACCT
CAGCGATTAAGGCAAATGGGTCTGCCTGTCCTCCCCGGCGGGAGCGACCC
GGACCAACGGAAGAACATATGTTCTACGTAGTACGTATTACTACGTAGTA
TATATGTATGTACTTATTGGCTGGTGCTGCGACATAACCTTGCGTGCAAT
GCCGACAGCCCTAAGTCGAAACTTCGGGTTTGCCCTCCGACAGGACTGTC
GGAGTAGCTATTTAGCCATGGACTCTCTGCGAACGAGTATTACAAACGTG
ATAGCAACTGCTTCGCTCCTCTCCGTGCCGGCGACGTCAGGGACCTCCGC
CTCCGGCGCGAGCGGCAACAGAAGCTGCGCGGGGCGGCGGCGGCAGCAGT
GGAAGCTGGAGGAGAGCGAGCAGCAGCACCACCACCACCACCAGCAGCAG
GAGTGCTTGCGGCACCGCCGGCAGCTGTGGGCACAGCAGCAGCGCCACCC
ATATCTGTCAAGGGTGTGCGGGCGGGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig91:339991..341019+

>mRNA_S-ischiensis_contig91.20917.1 ID=mRNA_S-ischiensis_contig91.20917.1|Name=mRNA_S-ischiensis_contig91.20917.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=756bp|location=Sequence derived from alignment at S-ischiensis_contig91:339991..341019+ (Schizocladia ischiensis KU_0333)
GGGCGACAGCGGCGCAGATGGTTCAGCGGCGCGGTCGCGGCGGGAGTTCC
CTCCTCCGTGGGTAGTGGTGATGGGGTGGGCCCACCGGGGGAAGAGCAGG
CGGGAGGGCTGCTCCCGGGCCCGGTGGATGGGGGTGTTCGGAGGACGGTA
AAGAAGGAAGAGGCCCGGAGACAGGCCCGTGAGGCCTTCAGGGGCGACAG
CGGCGCAGATGGTTCAGCGGCGCGGTCGCGGCGGGAGTTCCCTCCTCCGT
GGGTAGTGGTGATGGGGTGGGCCCACCGGGGGAAGAGCAGGCGGGAGGGC
TGCTCCCGGGCCCGGTGGATGGGGGTGTTCGGAGGACGGTAAAGAAGGAA
GAGGCCCGGAGACAGGCCCGTGAGGCCTTCAGGGACCTCCGCCTCCGGCG
CGAGCGGCAACAGAAGCTGCGCGGGGCGGCGGCGGCAGCAGTGGAAGCTG
GAGGAGAGCGAGCAGCAGCACCACCACCACCACCAGCAGCAGGAGTGCTT
GCGGCACCGCCGGCAGCTGTGGGCACAGCAGCAGCGCCACCCATATCTGT
CAAGGGTGTGCGGGCGGGAGGACCTCCGCCTCCGGCGCGAGCGGCAACAG
AAGCTGCGCGGGGCGGCGGCGGCAGCAGTGGAAGCTGGAGGAGAGCGAGC
AGCAGCACCACCACCACCACCAGCAGCAGGAGTGCTTGCGGCACCGCCGG
CAGCTGTGGGCACAGCAGCAGCGCCACCCATATCTGTCAAGGGTGTGCGG
GCGGGA
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