mRNA_S-ischiensis_contig91.20913.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20913.1
Unique NamemRNA_S-ischiensis_contig91.20913.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig91.20913.1 vs. uniprot
Match: A0A7S2ULB6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2ULB6_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 7.790e-14
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   16 LFDPERLAGLGRLQRGLIRNGFRHLLPGGVLVYCTCSLSRLQNEDVVSWLLGQEP 180
            L D ++LA L +LQR LI +GFR L PGGV+VY TCSLS  QNEDVVSWLL + P
Sbjct:   54 LTDSQQLADLVQLQRQLILSGFRLLKPGGVMVYSTCSLSEAQNEDVVSWLLKENP 108
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BLAST of mRNA_S-ischiensis_contig91.20913.1 vs. uniprot
Match: A0A4D9DDB5_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDB5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.430e-13
Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   22 DPERLAGLGRLQRGLIRNGFRHLLPGGVLVYCTCSLSRLQNEDVVSWLLGQEPQAIL 192
              E+L GL  LQRGL+RN FR L PGGVLVY TCSLS  QNEDVV+ LL +E  AIL
Sbjct:  336 SEEKLGGLEELQRGLLRNAFRRLRPGGVLVYSTCSLSPRQNEDVVAHLLKEEADAIL 392
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BLAST of mRNA_S-ischiensis_contig91.20913.1 vs. uniprot
Match: A0A7S3Y2Z9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2Z9_HETAK)

HSP 1 Score: 69.7 bits (169), Expect = 2.180e-12
Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:    1 ELLRQLFDPERLAGLGRLQRGLIRNGFRHLLPGGVLVYCTCSLSRLQNEDVVSWLLGQEPQAILL 195
            E L + F  ER A    LQ  L+RNGFR L PGG+LVY TCSLS  QNED+V  LL  EP AIL+
Sbjct:   58 ESLSKFFSCERAAATCALQARLLRNGFRLLKPGGLLVYSTCSLSSKQNEDIVMGLLLSEPDAILV 122
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BLAST of mRNA_S-ischiensis_contig91.20913.1 vs. uniprot
Match: A0A3P3XZ53_PLABS (SAM_MT_RSMB_NOP domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3XZ53_PLABS)

HSP 1 Score: 70.5 bits (171), Expect = 2.290e-12
Identity = 35/61 (57.38%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   13 QLFDPERLAGLGRLQRGLIRNGFRHLLPGGVLVYCTCSLSRLQNEDVVSWLLGQEPQAILL 195
            +     RL  L  LQR L+ NGFRHL PGGVLVY TCS    QNED+V WLL   P A LL
Sbjct:  222 RFMSGSRLEHLCSLQRRLLANGFRHLKPGGVLVYSTCSFCTAQNEDIVQWLLDNHPSARLL 282
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BLAST of mRNA_S-ischiensis_contig91.20913.1 vs. uniprot
Match: A0A7S1SPF9_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SPF9_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 2.570e-12
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   31 RLAGLGRLQRGLIRNGFRHLLPGGVLVYCTCSLSRLQNEDVVSWLLGQEPQAILLD 198
            RL  L  LQRGL+R GFR + PGGVLVY TCS++R QNEDVV WLL +E  A +++
Sbjct:  162 RLNDLEGLQRGLLRQGFRLVKPGGVLVYSTCSMTRAQNEDVVEWLLREEVTATVVE 217
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BLAST of mRNA_S-ischiensis_contig91.20913.1 vs. uniprot
Match: A0A0V0QV11_PSEPJ (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QV11_PSEPJ)

HSP 1 Score: 65.9 bits (159), Expect = 4.700e-12
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   22 DPERLAGLGRLQRGLIRNGFRHLLPGGVLVYCTCSLSRLQNEDVVSWLLGQEPQAILL 195
            D +++     LQ+ L++NGF+HL PGG+L+Y TCS ++ QNEDVV W L +  +A +L
Sbjct:    2 DEKKMENTIPLQKNLLKNGFKHLKPGGILIYSTCSFAKSQNEDVVEWFLQENKEAKIL 59
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BLAST of mRNA_S-ischiensis_contig91.20913.1 vs. uniprot
Match: A0A842SQI4_9ARCH (RsmB/NOP family class I SAM-dependent RNA methyltransferase n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A842SQI4_9ARCH)

HSP 1 Score: 67.8 bits (164), Expect = 2.170e-11
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   13 QLFDPERLAGLGRLQRGLIRNGFRHLLPGGVLVYCTCSLSRLQNEDVVSWLLGQEPQAILLDAG 204
            Q++ P+ +  L   Q+ LI+ G+  L PGGVLVY TC+    +NE V+SWLLGQEP A LLD G
Sbjct:  211 QMWSPKLVERLSHTQKKLIKAGYDALKPGGVLVYSTCTQEPEENEGVISWLLGQEPSAELLDIG 274
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BLAST of mRNA_S-ischiensis_contig91.20913.1 vs. uniprot
Match: A0A7S1PMQ1_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1PMQ1_ALECA)

HSP 1 Score: 65.9 bits (159), Expect = 3.720e-11
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   34 LAGLGRLQRGLIRNGFRHLLPGGVLVYCTCSLSRLQNEDVVSWLLGQEPQAILLD 198
            L  L  LQR L+ NG+R L PGGVLVY TCSL+ +QNE+VV WLL  +P A  LD
Sbjct:  138 LEELVALQRRLLWNGWRQLKPGGVLVYSTCSLASVQNEEVVRWLLDSDPSAAKLD 192
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BLAST of mRNA_S-ischiensis_contig91.20913.1 vs. uniprot
Match: A0A061QJD4_9CHLO (Multisite-specific trna:(Cytosine-c )-methyltransferase trm4b-like n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QJD4_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 1.760e-10
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   31 RLAGLGRLQRGLIRNGFRHLLPGGVLVYCTCSLSRLQNEDVVSWLLGQE 177
            R + L  LQRGL++  FR L PGGVLVYCTCSL+R QNE+VV W L  E
Sbjct:  286 RQSELRSLQRGLLKQAFRLLRPGGVLVYCTCSLTRSQNEEVVEWFLKSE 334
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BLAST of mRNA_S-ischiensis_contig91.20913.1 vs. uniprot
Match: A0A388LPU4_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LPU4_CHABU)

HSP 1 Score: 65.5 bits (158), Expect = 1.970e-10
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   13 QLFDPERLAGLGRLQRGLIRNGFRHLLPGGVLVYCTCSLSRLQNEDVVSWLLGQEPQAIL 192
            +  D  R+A L  LQ  L+ NGFR + P G L+Y TCSL+R QNED+VSWLL   P A L
Sbjct:  835 RFLDVTRMANLRELQCRLLDNGFRLMKPTGTLIYSTCSLTRAQNEDIVSWLLETRPDAEL 894
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2ULB6_9STRA7.790e-1465.45Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A4D9DDB5_9STRA1.430e-1366.67SAM_MT_RSMB_NOP domain-containing protein n=2 Tax=... [more]
A0A7S3Y2Z9_HETAK2.180e-1258.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3P3XZ53_PLABS2.290e-1257.38SAM_MT_RSMB_NOP domain-containing protein n=2 Tax=... [more]
A0A7S1SPF9_9CHLO2.570e-1260.71Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A0V0QV11_PSEPJ4.700e-1246.55SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A842SQI4_9ARCH2.170e-1151.56RsmB/NOP family class I SAM-dependent RNA methyltr... [more]
A0A7S1PMQ1_ALECA3.720e-1160.00Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A061QJD4_9CHLO1.760e-1063.27Multisite-specific trna:(Cytosine-c )-methyltransf... [more]
A0A388LPU4_CHABU1.970e-1053.33Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:310411..311503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score79.7
Seed ortholog evalue7.6e-13
Seed eggNOG ortholog81824.XP_001748474.1
EggNOG free text desc.Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family
EggNOG OGs39WNZ@33154,COG0144@1,KOG2198@2759
COG Functional cat.J
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size274
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817414.9472032-CDS-S-ischiensis_contig91:310412..3106111622817414.9472032-CDS-S-ischiensis_contig91:310412..310611Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 310413..310611 -
1695741097.5811644-CDS-S-ischiensis_contig91:310412..3106111695741097.5811644-CDS-S-ischiensis_contig91:310412..310611Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 310413..310611 -
1622817414.9625525-CDS-S-ischiensis_contig91:311432..3115031622817414.9625525-CDS-S-ischiensis_contig91:311432..311503Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 311433..311503 -
1695741097.593602-CDS-S-ischiensis_contig91:311432..3115031695741097.593602-CDS-S-ischiensis_contig91:311432..311503Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 311433..311503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20913.1prot_S-ischiensis_contig91.20913.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 310413..311503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20913.1

>prot_S-ischiensis_contig91.20913.1 ID=prot_S-ischiensis_contig91.20913.1|Name=mRNA_S-ischiensis_contig91.20913.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=90bp
ELLRQLFDPERLAGLGRLQRGLIRNGFRHLLPGGVLVYCTCSLSRLQNED
VVSWLLGQEPQAILLDAGAPSSSAAAGALPPRATRAGGGG
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mRNA from alignment at S-ischiensis_contig91:310411..311503-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20913.1 ID=mRNA_S-ischiensis_contig91.20913.1|Name=mRNA_S-ischiensis_contig91.20913.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1093bp|location=Sequence derived from alignment at S-ischiensis_contig91:310411..311503- (Schizocladia ischiensis KU_0333)
GAGCTGCTTCGGCAGCTGTTTGACCCGGAGCGTCTGGCGGGGCTGGGCCG
CCTTCAGAGAGGCCTCATCAGGTGAGACGCATGCCTCGATGCACTTCGAA
CTACGAGGTACAATACACTGTAGAGTACATACATACTTCGGAGTTTATCA
TCAGGTGAGGCGTGTGCCTCCAAGTTCTTCGAACTACTGTACTACTGTAC
AGTACATACGTACATACTTCTCAGTACTTCCAAGTATATATATGTATGTG
TACGGGTCCTGCTCCATCTCCATCGAGGCCCGTGGTCAATGGTCTCGGGA
CTACGACAAGCACAATGTGAGTACATACTTCGTATACACTACTCTACGTA
GTATATACTGGTGCACGGCCAAATAGCTAATCCTGTCGCGGGCCAAAGCC
GAAGTTTCGACTTAGGTCTGTTGGCAATGCACACAAGGCTATGTCCGAAG
ACAAGCCAAAGAGTACTCGTACGTAAAACATACTATGCTGGATGCGAGGC
CAAATGGCCGAAAGCTGCCCTGCGCCCTGCGGGGGCTGATCGGTGGTCCA
GCACCAAGTGTACTGGGATGTGATGTGATATGCTGCCATGTGATGTGTAC
TCTACTCTGATGTGCAGTATTAACAGGAACAACACCGGGCAAGGTGCAGG
CCACTAGTTTGACATTACACCGCATCACATCAAAGTCCAGCACGGAGTGT
ACTGGGGGGGCGACGGTCGGTGGCATGCGCAGGACGGGGTGCCCCCTGTC
TGACGCGAGTACGGTGCACACACGCAGACACACACACACACACACACACA
CACACACATGTGTGTACACAAGGAACTCCCAAGCAACGGCAGTCACTGAC
CCACGTACTGCCCCCCTGGGGCCATCCGAACCGGCGGAACAGGAACGGCT
TCCGCCACCTGCTGCCCGGCGGCGTGCTAGTTTACTGCACGTGCAGCCTT
TCCCGCTTGCAGAACGAGGACGTGGTCTCGTGGCTGCTCGGCCAGGAGCC
ACAGGCAATCCTGCTTGACGCTGGGGCCCCGTCTAGTTCGGCAGCTGCGG
GAGCTTTGCCTCCCCGCGCGACCCGTGCAGGAGGAGGAGGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig91:310411..311503-

>mRNA_S-ischiensis_contig91.20913.1 ID=mRNA_S-ischiensis_contig91.20913.1|Name=mRNA_S-ischiensis_contig91.20913.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=540bp|location=Sequence derived from alignment at S-ischiensis_contig91:310411..311503- (Schizocladia ischiensis KU_0333)
GAGCTGCTTCGGCAGCTGTTTGACCCGGAGCGTCTGGCGGGGCTGGGCCG
CCTTCAGAGAGGCCTCATCAGGAGCTGCTTCGGCAGCTGTTTGACCCGGA
GCGTCTGGCGGGGCTGGGCCGCCTTCAGAGAGGCCTCATCAGGAACGGCT
TCCGCCACCTGCTGCCCGGCGGCGTGCTAGTTTACTGCACGTGCAGCCTT
TCCCGCTTGCAGAACGAGGACGTGGTCTCGTGGCTGCTCGGCCAGGAGCC
ACAGGCAATCCTGCTTGACGCTGGGGCCCCGTCTAGTTCGGCAGCTGCGG
GAGCTTTGCCTCCCCGCGCGACCCGTGCAGGAGGAGGAGGAGAACGGCTT
CCGCCACCTGCTGCCCGGCGGCGTGCTAGTTTACTGCACGTGCAGCCTTT
CCCGCTTGCAGAACGAGGACGTGGTCTCGTGGCTGCTCGGCCAGGAGCCA
CAGGCAATCCTGCTTGACGCTGGGGCCCCGTCTAGTTCGGCAGCTGCGGG
AGCTTTGCCTCCCCGCGCGACCCGTGCAGGAGGAGGAGGA
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