mRNA_S-ischiensis_contig91.20910.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20910.1
Unique NamemRNA_S-ischiensis_contig91.20910.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:251391..256562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size604
Cds size576
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20910.1prot_S-ischiensis_contig91.20910.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 251419..256562 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.1468887-UTR-S-ischiensis_contig91:251390..2514181622817412.1468887-UTR-S-ischiensis_contig91:251390..251418Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 251391..251418 +
1695741095.4839919-UTR-S-ischiensis_contig91:251390..2514181695741095.4839919-UTR-S-ischiensis_contig91:251390..251418Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 251391..251418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.160209-CDS-S-ischiensis_contig91:251418..2514631622817412.160209-CDS-S-ischiensis_contig91:251418..251463Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 251419..251463 +
1695741095.4939272-CDS-S-ischiensis_contig91:251418..2514631695741095.4939272-CDS-S-ischiensis_contig91:251418..251463Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 251419..251463 +
1622817412.1757445-CDS-S-ischiensis_contig91:252241..2523491622817412.1757445-CDS-S-ischiensis_contig91:252241..252349Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 252242..252349 +
1695741095.504049-CDS-S-ischiensis_contig91:252241..2523491695741095.504049-CDS-S-ischiensis_contig91:252241..252349Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 252242..252349 +
1622817412.190063-CDS-S-ischiensis_contig91:253731..2538201622817412.190063-CDS-S-ischiensis_contig91:253731..253820Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 253732..253820 +
1695741095.5141263-CDS-S-ischiensis_contig91:253731..2538201695741095.5141263-CDS-S-ischiensis_contig91:253731..253820Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 253732..253820 +
1622817412.203948-CDS-S-ischiensis_contig91:255279..2554301622817412.203948-CDS-S-ischiensis_contig91:255279..255430Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 255280..255430 +
1695741095.524303-CDS-S-ischiensis_contig91:255279..2554301695741095.524303-CDS-S-ischiensis_contig91:255279..255430Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 255280..255430 +
1622817412.2164633-CDS-S-ischiensis_contig91:256379..2565621622817412.2164633-CDS-S-ischiensis_contig91:256379..256562Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 256380..256562 +
1695741095.5347722-CDS-S-ischiensis_contig91:256379..2565621695741095.5347722-CDS-S-ischiensis_contig91:256379..256562Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 256380..256562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20910.1

>prot_S-ischiensis_contig91.20910.1 ID=prot_S-ischiensis_contig91.20910.1|Name=mRNA_S-ischiensis_contig91.20910.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=192bp
MHHQQYMGPQAGQVQAQAQQQHLSYQWVSVKQHVQEPGKPRYLGVQVMPN
QGKGVYRAYVTWQGREVELGRYENEAEASVAYDLHMCAMHGRQAVVNHPY
AAYMHLPTGRILKLRSTKGVEHNVSSTTAKLAAEPPQQQQQQHRLTSAPA
SVAERRVPSSAPIALHHQQQQLQQQQQRTPAALWQQQIPVPG
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mRNA from alignment at S-ischiensis_contig91:251391..256562+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20910.1 ID=mRNA_S-ischiensis_contig91.20910.1|Name=mRNA_S-ischiensis_contig91.20910.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5172bp|location=Sequence derived from alignment at S-ischiensis_contig91:251391..256562+ (Schizocladia ischiensis KU_0333)
GCGCGGGATCGCGCTGGAGTCCCGGACGATGCACCATCAGCAGTATATGG
GCCCCCAGGCGGGGCAGGTGCAGGTGGGTGGAAGCTCCACGTTTCGTCCC
GTGCCTCTCGCCCCACCGGCGATTCATGCAGATTTTCTTCCCTTCACCTG
CTGAGGAGTCTGCCATATGAGCTGGTGTAGTTGTTTGTCAGAGGTGCTGG
GACACCTGTACATAAACAACAATAAACAGACGCCGACGCTTTCGCATTTA
GAGCTCTACGGCTAAGAGACGGGCCTCGGCCATGACCCTGGGCTTGTTTA
TTTGAACTTCCCCCCCACCCCCACGGTACAAAGTTGGTCCCAGGCTGGAC
CCTTGTGCGGTCCTTAGGCTGCTGTTCAACGTGGCGGGAGCGAAGGGCGC
GTTGCTGTAATCTAAGCAGTCCATGGAGCGCAAGAAATCTTACCCCGTGC
CTTGTTCTGTTGCGTTGTTCTGTCTACAAAACCTCTTGTTTTCTCGTCTC
CCAACTCCAATATCCAAAGGAGCGTGAGAAATCCTACCCGCTGCCTTCTT
CTGTTGTGTTGTTCTATCTACGACACCTCTTCTTTCATGTTGTCTCCCAA
CTCTTAATGTCCAAACCCTGCCTTGTTCTGTTGTGTTGTTCTATCTACAC
CACCTCTCGTTTTCTCTTGTCTCCCAATGCTAATATCCAGAGGGTGTCCG
TGCCCAAGGTTGGCACTTAACCCCTAAGTGGTGCCCTGATACAAGTAGGC
CCTTAATTAGAGGTCATTAGGGGCAATTAGACCTCAAATGAACGCTAATT
AGGCCCCAATTGACCCCTAATTGCCAACCCTGTCCATGCCCACTTGGCCA
GGCTCAGGCCCAACAGCAGCATTTGTCCTACCAGTGGGTGAGTGTGAAGC
AACATGTTCAGGAGCCAGGCAAGCCGCGGTACCTGGGGGTTCAGGTCATG
CCAAACCAGGTGCGGTTTAACCCTTTTACCTCTGCTAAATTGGACGAACA
CACTAAGACCCTACGATTGTACGGACCTCAGGGCTCAACTTTCTGGCAGT
AGATTTTTGAAGGGCGGTACGAGTACAGTACATACTGGCTAATGAATGCA
CTTGGTAGTGCGGGTCCGTAGCTGCTCGACCCTTTGCCACAGCCGCAAAG
TGCATGAAGCGATAGAGTTCAGTGAGTTTATTCCTTTCACTAAGATCCAG
AGGGTGGTGGCCAGGTCTTGGGGTGTAGTATGACTTTTTAACAGCACGTC
AATCGTCTTTGCGCGACGGCATGCGCTGGTGACTACTGTACTTCGAGGTA
TGTGACTACTCGCTTGCTTACTTCCCAGTACTGGCAAGACGAGCGAGGCT
GAAATAGTGAAGTACTCCGGAAGTACATCCAAGCATACTGCAGTAAGTTA
TGAGCAATCAATGAACATAGTACTGCGAGGGGAAGAAGGGCTTCGTTGAG
TCCCGTTTCGGGACGAGCCTTTTGGCACGGGGCCTGGAACTCGCCGCTTC
TCTACCACTCAAAATAGTACTGCAGCAGCTCGTCTCGGCCGAGGCGCATG
GTCAGTGGTCTCAGGAATACGGCAAGCACAACGTGAGTACTTCGAAGTAC
ATATATATACTTCGAAGTACTACACCAGAGCAGTACATGTATATATGCCT
AGCTCTACTGTGTTGCTCCCCCCCTCTAGTGCGATGTGCACGTGGTACTT
TGAAGTGCATACTACAGTACTGTTGTACGCTTGAGAAGATCCGCCGGTGA
CGCAGATTACATTTGTCTATCAATAATGGGTTGATTTGCCTCCACACGCC
AACCCTGGCCCCAAGCACGTTTGTGATGAGGCGGATTGGGTCTCGGTTTC
GGGACACGGCCAGCCCGGAGCTCGCTTCATTGTTGTAGAGTACATCTGAC
CCTGTGCGTCTGTCTGTCTGTGTGTCTCTCTGTCTGTCTGTCTGTCTGGT
CCAGGGAACGCGAAAATAACTACAGTACTGTATGCGTATGTGAACTGGCA
GCTGTGGTTGGGTCTCGGTTTCGGGACACGGCCCGGAGCTCGCTTCCTTG
TTGACACCTGACCCTGTGCATCTGTCGGTCTGTGTGTAGTCCTGTCTGTC
TGTCTGGTCCAGGGAAAGGGCGTGTATCGCGCGTGTGTGAACTGGCCGGG
GAGGGTGCTGTTGTTGGGTCTCAGTTTGGGGACACGGACCCGGAGCTCGC
TTCATTGTTGTGCAGTACATCTGACCCTGTGTAGCTGTCCGTCCGCGTCT
CTCTCTCTCTCTGTCTGTCTGTCTGCCTGCCTGTCTGTCTGTCTGTCTGT
CTGCCCGTCTGTGTGCCTCTCTGTCTGTCTGTCTGGTCCAGGGAAAGGGC
GTGTATCGCGCGTATGTTACCTGGCAGGGGAGGGAGGTGGAGCTGGGACG
GTATGAAAACGAGGCAGAGGCCAGCGTCGCGTGAGTGATTCATATAGGTT
GTAGCGAGGTACAGTCGCACGTGTGTGAGATGACTGTTCTCGTACTAGTA
GTAGATGTCCCATTTAAGAATTGAGTTTCTAGTACCTCGTATTAGTGATA
TCACACCAAGGAACTAAGAACAAGGAGGGGGGGGGAGGCATACGGGTCCG
GCTGCTGGTGACGGGAAAGAGTGGCTCCCCATCTGACATGAGTGCATACC
TCGAAGCATACACACACACACACACACACACACACATATACTCGTACATA
TTTATGTGCTCACGTTGTGCTTGCCGTAGGCCCAAGACCATTGACCACGC
GCCTCGGTTGAGACGGAGGAGGACTCCTCCCTCCCATATATAGGAGAAGT
ATGTATTAAGTATACCACTACAGGACATTTTTAATGGTGTTTATCTTTGA
GGCTCGGTTTCGGCATGAGGGAGGTCGAGCTGGGCAAACCTGAGGTGCTC
ACGGTGTTCAGCATGTCCGAAATAGGTCGGGTGGCAATACGTAGCTCCAT
CGGTGATATAACAGTCTTAAAGGGACAAGTACTAACACGAGAACACTCAA
TCTCACACATGTGCGATTGTACCTCGTTACAACTTATGTGAATCACCGCC
AGCAATGCCAGCAACACCCTGCCAACCACTTATCTATTTCACACCTACCA
CTACCACCACCAGCACCACCACCACGACCAACATCACCACCACCGCCGCC
GCCACCACCACCACCACCACCAACACCACCAACACCCCAACACCACCGCC
ACCACCACCGCCGCCACCACCACTGCTAGCACCACCACCACCATCACCAC
CACCTCCCCCCTCCGTGAGCCCCCGCCGCTTACGAATACGACCACTCTTT
GCTCTTCCGTATGACCACCACCATGCCACAACCGCCGCCGCTGCCACCAC
CGCCACGAACGACGACGCCGCCGCCAACGACGCCGACATCACACCCTTCC
CCCTCCACTTCTTATTCTATCACGAATGTACTGCTCCGTCTCGCACGAGG
CGCGGGGTCAATGGTCTCGGGACTACGGCAAGCACCACGTGAGTACATGT
ATATATAAGAACACTCGATTCTGAAATAGGACAACTACTTGCTAATACAA
GAACAGTCAATCTCACACACGAGCGATTGTACCTCGCTACAATTTAGTTG
AGTGGTAGATGAGCAGCGAGTTCCAGGCCCCGTGCCAACAGGATCGTCCC
GAAACAGGACTCAACGAAGCCCTTCGCTACAATTTATATGAATCACCGAC
GACATCACGCCGCGGCTTTTGCAGGTATGACCTCCACATGTGCGCCATGC
ACGGACGCCGGGCGGTGGTGAACCATATAAATTATACTACTTCGAAGTAC
GTACTACTTGTTTTCATTTATTTCTATAAATTACACTACTTCGAAGTACT
TACTACTTGTGTTTTCATTTGTTTCTTTCTTTGTTGCAGGTATGACCTCC
ACATGTGCGCCATGCACGGGCGCCAGGCGGTGGTGAACCACCCGTACGCC
GCGTACATGCATTTGCCCACGGGGCGCATACTGAAACTGCGCTCCACTAA
GGGCGTGGAACACAACGTGTCTTCCACGACAGCCAAGCTGGTGAGCCTGC
CTGTCTGCAGTAACGGAATATCGATCAGTAGATACAGTAGCTATCGGGCT
GGACTGATTGTTTTGTGGGTGGCGTTACTATCTACTTGGATTGAGTGTGG
GTCAAACTATCGAATATTGACTGTCGATAGGTGTATAGATCCGTACTATC
GATAAATACGTTGATTTGCTTAGATATTCCATCACTGTCTGTCTGCCTCC
CCCAATTCCCGATACTGAATACCCTATTAGTTTGACGGCTCAAGGTTTGA
AACACTACTGACACGCACACACGCACACATACACGTGCGCATACGGCAAA
CAAGTCATGAGCGCACACGAGTACAAGCACACACACACACACACACATAC
ACGCACACGACTGGACTGTATTATCATTACCTGACGCAATGATCGGTGTG
GTTTAAACTGAGCACGTATGAAACTGCAGTACCTACCCACACTATAGTGT
TATAGTTGCACATGACTGGACCGTGTCTATCAAACTCTTCAACTAGCCCC
ATCCCCCCGATCCCCTCGACCGATCACGTCAGCCGACCCAACTAGTCAAC
CCATGACAGCGATGGAATATCTAAGCAAATCAACCTATTTATCGACAGTA
CTGATCTATTTTGAGTGGTAGATAAACGGCGAGTTCCAGGCCCCGTGCCA
AAGGCTCGTCACCAAACAGGACTCAACGAAGCCCTTCTTCCCCTCGCAAC
ACGAAAAGAGAACAAAAAATAAAGAAGGAAAGGGGCGGGGTGATGATCTA
CTACTATGTCTATCGACAGTCGATATTCGATAGTTTTACCCACAATAAAC
CCAAGTAGCTACATAGTAGCGCCACGCACAAAATCAGTCCAGCCCGACAA
CTATCTACTGATCAATGTTCCATCACTGATCCATGAGACCCCCCCCCCGC
CGGCATCGCGGCTTTGCACATCCCGCCCCCCATGACCAGGCGGCGGAGCC
ACCACAGCAGCAGCAGCAGCAGCACAGGCTGACCTCTGCGCCCGCTTCCG
TCGCCGAACGAAGGGTCCCCTCCTCTGCCCCCATAGCCCTTCACCATCAA
CAACAGCAGCTACAGCAGCAGCAGCAACGCACGCCTGCCGCCCTCTGGCA
GCAGCAGATTCCCGTGCCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig91:251391..256562+

>mRNA_S-ischiensis_contig91.20910.1 ID=mRNA_S-ischiensis_contig91.20910.1|Name=mRNA_S-ischiensis_contig91.20910.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1152bp|location=Sequence derived from alignment at S-ischiensis_contig91:251391..256562+ (Schizocladia ischiensis KU_0333)
ATGCACCATCAGCAGTATATGGGCCCCCAGGCGGGGCAGGTGCAGATGCA
CCATCAGCAGTATATGGGCCCCCAGGCGGGGCAGGTGCAGGCTCAGGCCC
AACAGCAGCATTTGTCCTACCAGTGGGTGAGTGTGAAGCAACATGTTCAG
GAGCCAGGCAAGCCGCGGTACCTGGGGGTTCAGGTCATGCCAAACCAGGC
TCAGGCCCAACAGCAGCATTTGTCCTACCAGTGGGTGAGTGTGAAGCAAC
ATGTTCAGGAGCCAGGCAAGCCGCGGTACCTGGGGGTTCAGGTCATGCCA
AACCAGGGAAAGGGCGTGTATCGCGCGTATGTTACCTGGCAGGGGAGGGA
GGTGGAGCTGGGACGGTATGAAAACGAGGCAGAGGCCAGCGTCGCGGAAA
GGGCGTGTATCGCGCGTATGTTACCTGGCAGGGGAGGGAGGTGGAGCTGG
GACGGTATGAAAACGAGGCAGAGGCCAGCGTCGCGTATGACCTCCACATG
TGCGCCATGCACGGGCGCCAGGCGGTGGTGAACCACCCGTACGCCGCGTA
CATGCATTTGCCCACGGGGCGCATACTGAAACTGCGCTCCACTAAGGGCG
TGGAACACAACGTGTCTTCCACGACAGCCAAGCTGGTATGACCTCCACAT
GTGCGCCATGCACGGGCGCCAGGCGGTGGTGAACCACCCGTACGCCGCGT
ACATGCATTTGCCCACGGGGCGCATACTGAAACTGCGCTCCACTAAGGGC
GTGGAACACAACGTGTCTTCCACGACAGCCAAGCTGGCGGCGGAGCCACC
ACAGCAGCAGCAGCAGCAGCACAGGCTGACCTCTGCGCCCGCTTCCGTCG
CCGAACGAAGGGTCCCCTCCTCTGCCCCCATAGCCCTTCACCATCAACAA
CAGCAGCTACAGCAGCAGCAGCAACGCACGCCTGCCGCCCTCTGGCAGCA
GCAGATTCCCGTGCCGGGGGCGGCGGAGCCACCACAGCAGCAGCAGCAGC
AGCACAGGCTGACCTCTGCGCCCGCTTCCGTCGCCGAACGAAGGGTCCCC
TCCTCTGCCCCCATAGCCCTTCACCATCAACAACAGCAGCTACAGCAGCA
GCAGCAACGCACGCCTGCCGCCCTCTGGCAGCAGCAGATTCCCGTGCCGG
GG
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