mRNA_S-ischiensis_contig91.20909.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20909.1
Unique NamemRNA_S-ischiensis_contig91.20909.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig91.20909.1 vs. uniprot
Match: D8LIT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIT9_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 1.520e-77
Identity = 125/169 (73.96%), Postives = 145/169 (85.80%), Query Frame = 2 
Query:  917 MESTPEQAAEGRALVTVLACVLNKLVEANASNGHGATLEAGSVTKFHALQPPGISVADYLFRIHKYSSCSNQCFVLGLVYVDRLISMNNFALTALNVHRVAITSVMVAAKFFDDMYYNNAYYAKVGGVPCSEINSLEMEFLFRIKFHLHVTAQEYNKYLHQLSNHSGAA 1423
            MESTPEQ +EGRALVTVLACVL KL++ANA++GH   LEAG+VTKFHAL+PPGI VA+YL RI KYSSCSN+CFVLGL+Y+DR I  N+FALTALNVHRVAITSVMVAAKFFDD YYNNAYYAKVGGVPC E+NSLE+EFLF + F+L VT++EY  Y  +L  HS  +
Sbjct:    1 MESTPEQVSEGRALVTVLACVLEKLIQANANSGHDH-LEAGAVTKFHALRPPGIGVAEYLDRILKYSSCSNECFVLGLIYMDRFIQRNDFALTALNVHRVAITSVMVAAKFFDDQYYNNAYYAKVGGVPCVEMNSLEIEFLFGLDFNLAVTSEEYRNYRERLGEHSNCS 168
[Close]
BLAST of mRNA_S-ischiensis_contig91.20909.1 vs. uniprot
Match: A0A6H5JKD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKD5_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 8.810e-69
Identity = 124/166 (74.70%), Postives = 144/166 (86.75%), Query Frame = 2 
Query:  917 MESTPEQAAEGRALVTVLACVLNKLVEANASNGHGATLEAGSVTKFHALQPPGISVADYLFRIHKYSSCSNQCFVLGLVYVDRLISMNNFALTALNVHRVAITSVMVAAKFFDDMYYNNAYYAKVGGVPCSEINSLEMEFLFRIKFHLHVTAQEYNKYLHQLSNHS 1414
            MESTPEQ +EGRALVTVLACVL KL++ANA++GH   LEAG+VTKFHAL+PPGI VA+YL RI KYSSCSN+CFVLGL+Y+DR I  N+FALTALNVHRVAITSVMVAAKFFDD YYNNAYYAKVGGVPC+E+NSLE+ FLF + F+L VT++EY  Y  +L  HS
Sbjct:    1 MESTPEQVSEGRALVTVLACVLEKLIQANANSGHDH-LEAGAVTKFHALRPPGIGVAEYLDRILKYSSCSNECFVLGLIYMDRFIQRNDFALTALNVHRVAITSVMVAAKFFDDQYYNNAYYAKVGGVPCAEMNSLEIVFLFGLDFNLAVTSEEYRNYRERLGEHS 165
[Close]
BLAST of mRNA_S-ischiensis_contig91.20909.1 vs. uniprot
Match: A0A835YHA8_9STRA (Cyclin-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA8_9STRA)

HSP 1 Score: 221 bits (563), Expect = 1.860e-65
Identity = 110/168 (65.48%), Postives = 134/168 (79.76%), Query Frame = 2 
Query:  917 MESTPEQAAEGRALVTVLACVLNKLVEANASNGHGATLEAGSVTKFHALQPPGISVADYLFRIHKYSSCSNQCFVLGLVYVDRLISMNNFALTALNVHRVAITSVMVAAKFFDDMYYNNAYYAKVGGVPCSEINSLEMEFLFRIKFHLHVTAQEYNKYLHQLSNHSGA 1420
            MEST  QAAEG+A V VLACVL KL+EAN ++GH   L+   +TKFHAL PP ISVADYL RI +Y+SCSN+CFVL LVY+DRLI  NNFALT+ NVHRV ITSV++AAKFFDD YYNNAYY+++GG+P  E+N+LE EFLF I F L+VT  E+ KY  QL+NH+ +
Sbjct:    1 MESTQAQAAEGKATVAVLACVLTKLIEANTASGHDH-LDPACITKFHALMPPEISVADYLERIRRYASCSNECFVLSLVYIDRLILHNNFALTSYNVHRVVITSVLLAAKFFDDCYYNNAYYSRIGGIPVRELNTLEAEFLFGINFGLNVTPPEFYKYRSQLANHAAS 167
[Close]
BLAST of mRNA_S-ischiensis_contig91.20909.1 vs. uniprot
Match: A0A7R9VFU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VFU4_9STRA)

HSP 1 Score: 210 bits (535), Expect = 4.200e-62
Identity = 108/169 (63.91%), Postives = 128/169 (75.74%), Query Frame = 2 
Query:  917 MESTPEQAAEGRALVTVLACVLNKLVEANASNGHGATLEAGSVTKFHALQPPGISVADYLFRIHKYSSCSNQCFVLGLVYVDRLISMNNFALTALNVHRVAITSVMVAAKFFDDMYYNNAYYAKVGGVPCSEINSLEMEFLFRIKFHLHVTAQEYNKYLHQLSNHSGAA 1423
            MESTPEQ AEG A+V VLA VL++LV ANA     A  + G VTKFHAL+ PGI +  Y+ RIHKY+SCS +CF+L L+Y+DRLI  NNF LT LNVHRV IT+V++AAKFFDD YYNNAYYAKVGGV  SE+N LE+EFLFRI F LHV    +NKY  +L  H+ AA
Sbjct:    1 MESTPEQQAEGMAVVRVLAAVLDRLVGANAPL---AQADPGQVTKFHALKAPGIGILQYIERIHKYASCSTECFILALIYIDRLIQRNNFLLTELNVHRVVITAVLLAAKFFDDAYYNNAYYAKVGGVLVSEMNGLEVEFLFRINFSLHVQTDVFNKYRAELVAHAAAA 166
[Close]
BLAST of mRNA_S-ischiensis_contig91.20909.1 vs. uniprot
Match: A0A7S1GM66_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GM66_CYCTE)

HSP 1 Score: 211 bits (538), Expect = 2.590e-60
Identity = 105/169 (62.13%), Postives = 131/169 (77.51%), Query Frame = 2 
Query:  917 MESTPEQAAEGRALVTVLACVLNKLVEANASNGHGATLEAGSVTKFHALQPPGISVADYLFRIHKYSSCSNQCFVLGLVYVDRLISMNNFALTALNVHRVAITSVMVAAKFFDDMYYNNAYYAKVGGVPCSEINSLEMEFLFRIKFHLHVTAQEYNKYLHQLSNHSGAA 1423
            ME+TPEQAAEG  +V VL+ VL +LV AN +    +  + G VTKFHAL+ PGI +  YL RIHKY+SCSN+CF+L L+Y+DRLI  NNF LT LNVHRV IT++++AAKFFDD YYNNAYYAKVGGV  SE+N LE++FLFRI F LHVT + ++KY  +L +HSG A
Sbjct:    1 METTPEQAAEGIVVVRVLSAVLERLVSANTTI---SLSDPGQVTKFHALKAPGIGILQYLERIHKYASCSNECFILALIYIDRLIQRNNFLLTELNVHRVVITAILLAAKFFDDAYYNNAYYAKVGGVLVSEMNGLEVDFLFRINFSLHVTPELFHKYREELVSHSGGA 166
[Close]
BLAST of mRNA_S-ischiensis_contig91.20909.1 vs. uniprot
Match: A0A1Z5K8V5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8V5_FISSO)

HSP 1 Score: 208 bits (529), Expect = 3.280e-59
Identity = 105/173 (60.69%), Postives = 130/173 (75.14%), Query Frame = 2 
Query:  917 MESTPEQAAEGRALVTVLACVLNKLVEANASNGHGATLEAGSVTKFHALQPPGISVADYLFRIHKYSSCSNQCFVLGLVYVDRLISMNNFALTALNVHRVAITSVMVAAKFFDDMYYNNAYYAKVGGVPCSEINSLEMEFLFRIKFHLHVTAQEYNKYLHQLSNHSGAANWLT 1435
            ME+TPEQ AEG  +V VL+ VL++LV ANA+    A  + G VTKFHA++ P I +  YL RIHKY+SCSN+CFVL L+Y+DRLI  NNF LT LNVHRV ITSV++AAKFFDD YYNNAYYAKVGGV  SE+N LE++FLFRI F LHVT   + KY  +L+  +G  ++ T
Sbjct:    1 METTPEQTAEGLVIVRVLSAVLDRLVSANAAM---AQADPGQVTKFHAMKAPAIGIQQYLERIHKYASCSNECFVLALIYIDRLIQRNNFLLTELNVHRVVITSVLLAAKFFDDAYYNNAYYAKVGGVLTSEMNGLEVDFLFRINFSLHVTPDVFEKYRVELAAQAGTVSFQT 170
[Close]
BLAST of mRNA_S-ischiensis_contig91.20909.1 vs. uniprot
Match: A0A6U6KJT1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6KJT1_9STRA)

HSP 1 Score: 210 bits (534), Expect = 8.760e-59
Identity = 108/169 (63.91%), Postives = 128/169 (75.74%), Query Frame = 2 
Query:  917 MESTPEQAAEGRALVTVLACVLNKLVEANASNGHGATLEAGSVTKFHALQPPGISVADYLFRIHKYSSCSNQCFVLGLVYVDRLISMNNFALTALNVHRVAITSVMVAAKFFDDMYYNNAYYAKVGGVPCSEINSLEMEFLFRIKFHLHVTAQEYNKYLHQLSNHSGAA 1423
            MESTPEQ AEG A+V VL+ VL++LV ANA     A  + G VTKFHAL+ PGI +  YL RIHKY+SCS +CF+L L+Y+DRLI  NNF LT LNVHRV IT+V++AAKFFDD YYNNAYYAKVGGV  SE+N LE+EFLFRI F LHV    +NKY  +L  H+ AA
Sbjct:    1 MESTPEQQAEGMAVVRVLSAVLDRLVGANAPL---AQADPGQVTKFHALKAPGIGILQYLERIHKYASCSTECFILALIYIDRLIQRNNFLLTELNVHRVVITAVLLAAKFFDDAYYNNAYYAKVGGVLVSEMNGLEVEFLFRINFSLHVQTDVFNKYRAELVAHAAAA 166
[Close]
BLAST of mRNA_S-ischiensis_contig91.20909.1 vs. uniprot
Match: A0A6T6F4E0_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6F4E0_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.070e-58
Identity = 102/169 (60.36%), Postives = 131/169 (77.51%), Query Frame = 2 
Query:  917 MESTPEQAAEGRALVTVLACVLNKLVEANASNGHGATLEAGSVTKFHALQPPGISVADYLFRIHKYSSCSNQCFVLGLVYVDRLISMNNFALTALNVHRVAITSVMVAAKFFDDMYYNNAYYAKVGGVPCSEINSLEMEFLFRIKFHLHVTAQEYNKYLHQLSNHSGAA 1423
            ME+TP+QAAEG A+V +LA VL++LV  NAS+   A  + G ++KFHAL+ PGI +  YL RIH+Y+SCSN+CF+L L+Y+DRLI  NNF LT LNVHRV IT++++AAKFFDD YYNNAYY+KVGGV  SE+N LE++FLFRI F LHVT   + KY  +L +H  AA
Sbjct:    1 MEATPQQAAEGLAIVKILAAVLDRLVCTNASH---AQTDPGQISKFHALKAPGIGIQQYLERIHRYASCSNECFILALIYIDRLIQRNNFLLTELNVHRVVITAILLAAKFFDDAYYNNAYYSKVGGVLVSEMNGLEVDFLFRINFSLHVTPDVFKKYKDELLSHCVAA 166
[Close]
BLAST of mRNA_S-ischiensis_contig91.20909.1 vs. uniprot
Match: A0A448ZSA5_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSA5_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.160e-58
Identity = 104/166 (62.65%), Postives = 127/166 (76.51%), Query Frame = 2 
Query:  917 MESTPEQAAEGRALVTVLACVLNKLVEANASNGHGATLEAGSVTKFHALQPPGISVADYLFRIHKYSSCSNQCFVLGLVYVDRLISMNNFALTALNVHRVAITSVMVAAKFFDDMYYNNAYYAKVGGVPCSEINSLEMEFLFRIKFHLHVTAQEYNKYLHQLSNHS 1414
            M+ TPE+AAEG  LV VLA VL +LV++NA+    A  + G VTKFHAL+ PGI V  YL RI KY+SCSN+CF+L L+Y+DRLI  NNF LT LNVHRV IT++++AAKFFDD YYNNAYYAKVGGV  +E+N LE++FLFRI F LHV  +E+ KY  QL  HS
Sbjct:    1 MDPTPEEAAEGSVLVKVLAAVLERLVKSNAAT---ARTDPGQVTKFHALKAPGIGVESYLDRIQKYASCSNECFILALIYIDRLIEGNNFLLTELNVHRVVITAILLAAKFFDDAYYNNAYYAKVGGVLVNELNGLEVDFLFRINFSLHVQPEEFEKYKAQLVTHS 163
[Close]
BLAST of mRNA_S-ischiensis_contig91.20909.1 vs. uniprot
Match: A0A7S2MLM5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MLM5_9STRA)

HSP 1 Score: 208 bits (529), Expect = 6.170e-58
Identity = 107/169 (63.31%), Postives = 130/169 (76.92%), Query Frame = 2 
Query:  917 MESTPEQAAEGRALVTVLACVLNKLVEANASNGHGATLEAGSVTKFHALQPPGISVADYLFRIHKYSSCSNQCFVLGLVYVDRLISMNNFALTALNVHRVAITSVMVAAKFFDDMYYNNAYYAKVGGVPCSEINSLEMEFLFRIKFHLHVTAQEYNKYLHQLSNHSGAA 1423
            MESTP QAAEG A+V VLA VL++LV AN+   H A  + G VTKFHAL+ PGI +  YL RIHKY+SCS +CF+L L+Y+DRLI  NNF LT LNVHRV IT+V++AAKFFDD YYNNAYYAKVGGV  SE+NSLE+EFLFRI F L V+ + + KY  +L +H+  A
Sbjct:    1 MESTPAQAAEGMAVVRVLAAVLDRLVNANS---HLARADPGQVTKFHALKAPGIGIMQYLERIHKYASCSTECFILALIYIDRLIQRNNFLLTELNVHRVVITAVLLAAKFFDDAYYNNAYYAKVGGVLVSEMNSLEVEFLFRINFSLKVSPELFQKYHAELVSHAVGA 166
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIT9_ECTSI1.520e-7773.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKD5_9PHAE8.810e-6974.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YHA8_9STRA1.860e-6565.48Cyclin-domain-containing protein n=1 Tax=Tribonema... [more]
A0A7R9VFU4_9STRA4.200e-6263.91Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1GM66_CYCTE2.590e-6062.13Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1Z5K8V5_FISSO3.280e-5960.69Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A6U6KJT1_9STRA8.760e-5963.91Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6T6F4E0_9STRA1.070e-5860.36Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A448ZSA5_9STRA1.160e-5862.65Uncharacterized protein n=2 Tax=Pseudo-nitzschia m... [more]
A0A7S2MLM5_9STRA6.170e-5863.31Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:243203..251203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score250.0
Seed ortholog evalue8.2e-64
Seed eggNOG ortholog2880.D8LIT9
KEGG koko:K06657
KEGG Pathwayko04111,map04111
EggNOG free text desc.Cyclin-dependent protein kinase
EggNOG OGsKOG1674@1,KOG1674@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclin-like
Ec32 orthologEc-20_001500.1
Exons5
Model size1437
Cds size519
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20909.1prot_S-ischiensis_contig91.20909.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 243203..250287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817414.7485547-CDS-S-ischiensis_contig91:243202..2432621622817414.7485547-CDS-S-ischiensis_contig91:243202..243262Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 243203..243262 -
1695741097.4301567-CDS-S-ischiensis_contig91:243202..2432621695741097.4301567-CDS-S-ischiensis_contig91:243202..243262Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 243203..243262 -
1622817414.7610693-CDS-S-ischiensis_contig91:244392..2444791622817414.7610693-CDS-S-ischiensis_contig91:244392..244479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 244393..244479 -
1695741097.4533374-CDS-S-ischiensis_contig91:244392..2444791695741097.4533374-CDS-S-ischiensis_contig91:244392..244479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 244393..244479 -
1622817414.7731907-CDS-S-ischiensis_contig91:246239..2463001622817414.7731907-CDS-S-ischiensis_contig91:246239..246300Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 246240..246300 -
1695741097.4673564-CDS-S-ischiensis_contig91:246239..2463001695741097.4673564-CDS-S-ischiensis_contig91:246239..246300Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 246240..246300 -
1622817414.7842433-CDS-S-ischiensis_contig91:247861..2480731622817414.7842433-CDS-S-ischiensis_contig91:247861..248073Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 247862..248073 -
1695741097.4777102-CDS-S-ischiensis_contig91:247861..2480731695741097.4777102-CDS-S-ischiensis_contig91:247861..248073Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 247862..248073 -
1622817414.8003008-CDS-S-ischiensis_contig91:250188..2502871622817414.8003008-CDS-S-ischiensis_contig91:250188..250287Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 250189..250287 -
1695741097.48797-CDS-S-ischiensis_contig91:250188..2502871695741097.48797-CDS-S-ischiensis_contig91:250188..250287Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 250189..250287 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817414.8119726-UTR-S-ischiensis_contig91:250287..2512031622817414.8119726-UTR-S-ischiensis_contig91:250287..251203Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 250288..251203 -
1695741097.4982219-UTR-S-ischiensis_contig91:250287..2512031695741097.4982219-UTR-S-ischiensis_contig91:250287..251203Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 250288..251203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20909.1

>prot_S-ischiensis_contig91.20909.1 ID=prot_S-ischiensis_contig91.20909.1|Name=mRNA_S-ischiensis_contig91.20909.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=173bp
MESTPEQAAEGRALVTVLACVLNKLVEANASNGHGATLEAGSVTKFHALQ
PPGISVADYLFRIHKYSSCSNQCFVLGLVYVDRLISMNNFALTALNVHRV
AITSVMVAAKFFDDMYYNNAYYAKVGGVPCSEINSLEMEFLFRIKFHLHV
TAQEYNKYLHQLSNHSGAANWLT
back to top

mRNA from alignment at S-ischiensis_contig91:243203..251203-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20909.1 ID=mRNA_S-ischiensis_contig91.20909.1|Name=mRNA_S-ischiensis_contig91.20909.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8001bp|location=Sequence derived from alignment at S-ischiensis_contig91:243203..251203- (Schizocladia ischiensis KU_0333)
CCTCACGTCAGGGGGGGCCTGTAGCAGTCGCTCGCGTGCCGCCCCTCCGA
CCCCGAACCGACGTAGCTGCCGTTGCCCGAGCTCGGCCTTGCGGAGCTCG
TAGCGTCGGTGGACACCCGCGTGTGGGGGCCTCCGGAATTGACGGAAAAC
CGGACCAGGCGGCGAATGGTTGGGAGGTGCTCGCAGGCCACCACCGGCAG
GAAAACACGAACCCTCGTCCTTGCCGAGGGTGGAACGCCCCGTGGTATTG
GTGTGCGTATGGTCTTGACGCCGACACGTTTGCTGGCCTAGGGACAGCTG
GGTCGGGCGAAAAATGTCCGAGCCGAGGAGCCCTCGTGGCTGGGGTGCAG
CAATGCTGCTCGCCTGAGTGTCCCTGGGACCTCGGCAACCATAGATGAAT
CCCCGAATCGGCCGCCCCAGCTCCCCCACCCCTGAGCCAGGCAGCCACCG
CAGCTGTGCACGGGTCGTCCGGAGGCGCCGCGCTCGCCACAACCATCTGG
CGTGAAAGATTCGAGAGCAGGGGTCTGCTCCACGCGTGCAGTGGGCACTT
GAGCTGGCTGAGGTCGCCTCAGGGCGGTTCCGGCATCCGTGCTGAGGCTG
CGGGCTGGCAATACCCATCGTGAGACTCACGGTGTGGAGGCCCCATATGC
TCACAAACTGTTCTTACAGCTACGGAACGGCCCAACGAGGCGTTGTTGGA
AGGCGTCTCCCTCGCCACTCCACACTCCGCAAGGTGTGCTTCCAGCAGGG
AAGGGGGAGCGGGGTTCGTGCCAGCAAGCGTGGCGGCGGCGGCGTGGCTT
CAGGCACTAGCTGGTCCCCGCTTTCGAAAAAGCGGGATTGGCGGCGGCGT
GGCTTGAGGCACCAGCTGGTGGCGGTAGAGGAAGGATAAGCGGCAGGGCG
GGGATAACGCCTTACCATGGAGAGCACTCCCGAGCAGGCGGCGGAGGGGC
GGGCACTGGTGACTGTGCTGGCATGCGTGCTGAACAAGCTGGTGGAGGCC
AACGCGAGCAACGGGGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGCATGCGTATCCGCTGTGTAGCACCTGCTCCGTCTGGACCGAGGCGCGT
GGTCAATGGTCTCGGGACTACGGCTAGCACAACGTCAGTACATAGTAGTA
GTAGTGGTAGTAGTAGTGGATAGTTGTAGTAGTAGTACAGTAGTTCAGCG
GCAAAAGTACAAGTACGGGCCAGTCGTCATCCGGAGGGCAGCAGTGGCCC
CGCAGCACGGAGGGAGGATGCTAGTGTACGAGTACAGTAGTACTCAGCGG
GGTTGGCGAGGAACTCAACGAGCGCGAAAAGAGCCCAGAATTTCGCCGTG
TAAAACGTGGCTGCACTTTGGGTGAAGCAACTTGCTACGGTGATTCACAT
AAGTTGCAACGAGGTACAATCGCACGTGTGCGAGATTGACTGTTCTCGTG
CTAGTAGTTGTCCTAAGTTACTACGGTGCGGAAGCTCTTGGAAGTACGGT
GCACGGCATCCTTTGGGCTTTCACGTGAAGCACGCTCGGACTCGACGTTG
GTCCGGCCGTCCCACTAGGATGATCGTGTGGCCCCCCCAGGGGCCTCTGC
GCCCGTGGAGGCAGGGGTTTGCCTTTGCTTGGACGCTGCCGTGCTTGTGC
ACCGACAGGTGAAAAGGAGGTCACGAACTCCACGAAGAAATAGATGCGTC
TGCCGGAATCGTCGATCGCGCGGGGTCAAGTAACAGTCCCCGGAGTACCG
TAGTCGTCGCAGAGATTTTGCCCCCCACGGGCTTTTTTTTTCTTTTCGGG
GGAATGTTTCTAGCCGGAAAGGTCTGAATTGTCCCGAAAGCCCTCGGAAC
GGTTGCCCCAGGTCCTCAGGGAGATTTTCCGATTTTCCCGCGCGAATCCG
ACCAGTATTCGGCGAGAAAAGTTATCCCGAACATTGGCATGGGGGGCGAG
ATCTCTCCATCGATCACGGTACATGTCGCGGCAGTTTGTACTTGAGAGCA
CCGAGGGAGAGCCCGAAAGGCACACGAGTCCGTGCCGGTACCCGGTCAAG
TGTGTGATTCATATAAACTGTAATGAGGTACAATCGCACGTGTGTGAGAT
TGACTGTTCTCGTATTTGTACTTGTCCCATTTCAGAGTTGGGTGTTATTA
TATTGCTGATTATCACATCAAGGAACTGATATGAGCTCAATCACCAGAGT
ACATTAGCCGTGTAGGTAGTTGTTCCAGGTGTCCCGCTGGCATTTCCAGC
TCCGGTTGCCCGGGCCGTGTGGTGCGGCCATGGATCGCCCGTTTGGGTTG
GCACTTAACCCCTAAGTGGTGCCCTTTTAGGCCCTTAATTAGAGGTAGTT
AGGGGTAATTCGACCTAAAACGAAGGCTATTTAGGCCCTAAGTAACCCCT
AAGTGCCAACCCTGCACCCGTTTGGGTTGGCACACAAGCCTCTCAAGCCC
GCGTTTCTGTCCCTGCCATGAGTGCTGCGACTGCGGTAGTACGGCCTGTA
CAGGAGAAGTGTTCTACTGATTGAACAGTAGTGCTTCGAAGTACTAATAA
TAGGTTGCGTACTCGGACGTATGACTACTGTATACGTCCAAGTATATACA
CACTACATATGTCATCCACTACGTCCAATAGAACGCGTGGCCAATGGCTT
CGGCTGCAGCTGGCCAGCGATCCACGAGAAGGAGCAAAGACGAGGATCGT
TCGGATCCAGGGCATGCACAGAGACCCCTCCCACCCCAGCTCTGCTGGGT
GTGGGGACGGAGGGGGCTTCGAATTATATATATATATATATATACCCATG
TAACTCGAAATGTAGACACGTTGTGCTCATCTCTGGGGACCATTGCCCAG
ACAAGTTATATTTCCGTCCACCAGAACTAAGTAGATATAGAGTTTAAAAT
AAGTATATTACTGTACATGTTACTTTCCAAGTACAGATATGTGTGTTTTT
CTGTCGACTGATATAGCAGACCACACGTTATATGTACTCACGTGGTGCTC
GCCGTAGTCCCGAGACCATTGGCCACGCGCCTCGGTTGAGACGGAGCAGG
CACTTATTGTGGCGAATACTCTACATCAACCGCGCCCATTGTTCCTCGTG
CCTGCCGTGCCATGACTCCAACCCCATCAGCACGGCGCCACGCTGGAGGC
GGGATCGGTTACAAAGTTCCACGCGTTGCAGCCCCCGGGCATCAGCGTGG
CGGACTATCTGTTCCGGATCCACAAGTACTCCAGCTGCAGCAACCAGTGC
TTTGTGCTGGGGCTTGTCTACGTGGACCGCCTGATATCCATGAACAACTT
TGCGCTCACGGCGCTCAACGTGCACCGCGTGGCCATCACCAGGTGGGTGA
TTGATATATTTTGTACCGAGAGAGACCCCCCTGTATTGCCCGTGCCTTGC
CCCTCTTCTTTTTTTCTTCTCTTGGTTTTTGTGCCCTGCGGGTGAGAAGA
AGGGCTTATGGTGAGGGCCCCACCTTAGGTTGTCTTTGAAACATGTAACG
AGGTACAGTCGCACGTGTGTGAGATTTAGTGTTCGCTTATTAGTAGTTGT
CCCGTTTAAGACTCGAGTGTTCTTGTATTACTGTAGTGACAATCACATCA
AGGAACTAAGAACAAGGAGGGGGGGGGGCGAGGGGGAAAGAAAGGAGGAA
AAGAAGGTGGGTATTGTGTGATGTGATGCGATGTGATGTGACATGATGTG
TGCGTTCGCATGCTTAAGTTTGACATCGCATCACATTGTGTGTGTGTGCG
CGCGCACGCCGTGTGCATGGGCGTGTTGTGTATACTTGGAAGTATGCGTG
CAAGTATGTGCGTGTGTGTATGTGTGTGCACGTGCATATTTGTGTGTGTT
TTGTGCTTGTGCCGTGCCGTGCGTGTGCGCACGTGGGTGTGTGCATGCGT
GCGTGAGCGTCCATTCGCTTGCTGTGCACACGCACTCTTGGTCTATTACA
GCACTACAGCACTCTGCTGCGGCTGTTACTTAAACCCTTTTACCCCTGGG
TCCGTGTACTCACAGGGTTTTAGTGTGTAAGTCCAATTAGGCAGGGGTAA
AAGGGTTCAGGGGTTGAGTTGCTGGATGTAGACCTGACCAGGCGTGTCAT
TGTCCTACCGTAAAGGAAGTGGAATATCGAGCCCCTTCGGGACAACCGGC
GGGCAATTTGTTCTGGCCGGATCGGCTTTCGATCGGATCGAAAACCCTCG
GAATGAAAGCCTTTGGTCGAGACCGATACATTCCGAGGGTTTTCGATTCA
ATTGAGAACTGATCCGGCGAGAAACAATTGCCCGCCGGTTGTCCTGAAGG
CGTTCGATATTCCACTTCCTTTACGGTACTGTAGCTCCGGCCTCGGAGGA
GACCAGACGCGGGGTCAAATGTGTCTGTGCAGGGCAGCCTTGTGCGCGAG
TACTCTACTCTCCGCACACACACACACACACACCCACACGTTTATTTCCA
AGTATACTCAACGTGCTCGCATTCGGTTATCGTTCGCTTCTGGCCCTAAG
CGACGGTCCTCCCCACATCCCGCATCCAGCACTCTTGCCTCACTGCTAGA
GTATTGAAGTGGCAAGGCCTACCAGTTCGTGTGTCGGTTTCAACTGGTTG
CCGGTAAGGGCTAACGTATTGCCAAAATCAACAAATTGCGGTCGTGTCTC
CCGCTCCGGCTACACGATTGGCCACCAGTCGGTTAACTGGTCAAACCGGT
TTGCCCGGAACCGAACGACAAACGCCAGCACCAGTTCACAACACTACTCA
CTGCCCCTTCTGTCCTTCACTCACGCCGCCGTCGCCCCCGCCACCGCTGC
CACGGTCCCGCCGCGCCGCCGGGGATCGCCCCCACCCCTGTGCAACCCCT
GCGCGCTGGCTGCCTGCCCCAATGGCTTGGTTGGGTGATTGCGATTGATG
CAGCGTGATGGTGGCGGCCAAGTTTTTTGACGACATGTACTACAACAATG
CATACTACGCAAAGGTGGGAAACATAAATAAAAGAGGGGATGTTCGTCAG
CAATGGAATATCGACCCGATTTGTTGTAGTACATACTGCAGCAGTACTGT
AGTATACTTCGAAGAATATATTGACAAATATATCGATATTATGGTTTTTT
TGTATGCGTGATGGTGGCGGCCAAGTTTTTTTACCACATGTAAGAGTACT
ACAACAACGCATACTACACAAAGGTGGGAAAAAGAAATAACTGCGAGGGG
TGTTAGTCAGTGATGGAATATCGACCCGATTTATTATGCTACTGTACAGT
AGTGTTGTAGTACGAGTATGTATATTGAATAATTTATCGATGTTGCTTCG
ACATATGATTTTTCTATATGCATCATGGTGGGGGCCAAGCTCTTTGACAA
CATGTAGTACAACAACGCCTGCTACGCAAAGGTGGGAAAAGAAATAAATA
AGAGGGGGTGTTCGTCAGTGATGGGATATCCACCCCATTTGTTATACTAC
GAGTACGTACTAGTACTGCAGTGTGTATATATATTGGCAAATATATTGAT
ATTGTGATTTGTTTGTATGCATGATGGTGGCGGCCAAGCTCTTTGACGAC
GTGTACTACACCAACGCATACTACGCAAAGGTGTGTGTACTCACGTCTCT
GTGCATGGCCTGGACCCGAACTATCCTCGTCATTGGTCGCCGATTGCCCG
TGCGTCCCATCACAGTACTCGAGCGATTCTTTGAGTACTGGGCTTACCGG
AGCGGTAAAATACCTAAATCGGTTCCACTGATAGACAGACCTGCGTCCCT
CGTTAGCAGGATACGGTCATGTCTCCACCGCACTCGGCTTTGCAGAGTGG
CCCAAGTACATCGGTTCCGCTGATGGACAGACCGGGGTCCGTCATAAAAC
CTGGGGTCCGTATAATCATAGGGTTTTAGTGTGTGAGTCCGATTTTGCAG
GGGCAAAAGTGTGAACAGGATACGGCCACGTCTGCCCTGCCACGGCGGTG
TGGCTGTCACCCAGCCCGCGTACACACACACACACGTACGAGTACACATA
CACACACATGCACGCACACGCACGGGCAGTGATGAAATATCTAAGTAAAT
CGACCTATTTATCGACAGTACTGATCTATACACATAGGTGGCTAGCGATC
CACGAGAAAGGAGCAAAGACGAGGATCGTTCGGGTCCAGGGCATGTACAG
AGACGTGAGTACACACACTGATCTATATATCTATCGATAGTCGATGTTCG
ATAGTTTGACTCACACTAAATCCAAGTAGTTAGTATTAGCAGGAACAACA
CGGGGCGAGGTGCGGGCCACGTCACTAGAGACCTCAGCAGTGGCCCTTCC
TTATAGCTTGCCAGGGGAAATTTGTGTGGGGGAGGGGAGTTGGACGGGGA
GGAGGAGGAGGAGGAGGAGGGGGGGGAGGGGGGTAGCTACCTAGCAACGC
CACCCACAAAATCAGTCGAGCCCCATAGCTGTCTACTGAGCTGGCCAGCG
ATCCACGAGAAGGAGCAAAGACGAGGATCGTTCGGGTCCAGGGCATGCAC
AGAAACGTGAGAGCACACACACTGATTGATACTCCCTGCACAGGTGGGAG
GCGTCCCCTGCTCCGAGATCAACTCCCTGGAGATGGAATTCCTATCGATA
GTCGATATTCGATAGTTTGACCCGCACTAAATCCAAGTAGCTACAGTAGC
AACGCCACGCACAAAATCAGTCAGGAGCCCGATAACGATCTACTGATTTC
TGTTCCGTTGTTGATTTGTCCCAGGTGGGAGGCGTCCCCTGCTCCGAGAT
CAACTCCCTGGAGATGGAATTCCTCTTCCGCATCAAGTTCCACCTACACG
TCACCGCACAGGTACCGTAATCGGCGGAGAGATTTTGCCCCCACGGGCCA
ATTTCGGGGGAATATTTCTGGCCGGGAAGGTCCTGGATTGTCCCTAAAGC
TCTCGGAAACGTTCCCCCAGGTCCTGAGGGAGATTTTCCAAGTTTTCCTG
CGCGAATCCGACCAGGATTCGGCGAGAAGCGTTCTCCCGAAAATTGGCAC
CGGGGGGTAAGATCCTCCGACGATTCCGGTAGCCATGGCACAACAGCGTT
TTTTGTTGCCCAAGTTACTTCAGGTATAGGTAACAACACGGGGCGAGGTG
CAGGCCACGTCACTAGAGACCTCAACAGTGGCCCTTCCTTAGCTCGCCAC
GGGAAAGTTTGGTGGGGAAGGGCAGGTGGAGGGAGAGGAGGAGGAGGAGG
AGGTGGAGGGGGTGGGGGGGGGGGAAAGAGGAAAGTAGGGAGAGGAATGG
GACAGGGGGCAGGCGACGGCGCGTCAGACAGTGACCGAGTAGGCAAAACC
ACCACACCGCATAGCTGTAGCGGAGAAATGAACGAACAGGGAACACCAAG
TGATCGCTGGACCCCTGTACCGCAATCACCAAGCACCGTGTTGACACCAG
TAAAACGCGTCTACGCAACCGCACAATGGTGTGGCCAACACCAGAGGCTC
AGTCCGCAGTCGCTAATCGCAAGTGGTGTGCAGCGAGGTGTGGTTCATGC
GGGGCCCCGCACGTACACAGCCGGACCCTGGCGAAGCGCGCAGCCAAACA
TTCCCGGACACGCCTCCGAAGGTGTGGGAGATCGGTGGAAAATCGGCGCT
CACCTCTAGCAAAAAGGACGACGGAAGGGCATGCAGAATGTTTTTGGCGA
TGTCGCAAATTTTCGCCCAAATTGCGATCGAAGAAAACCGGCCCAAATAT
CGACACAAATATCGAAACATCGATGCCGAGCCATGAAACGCCGTATCCAG
GTATGGAAACCCCAATGATTTCGGCGAGTAGAGTATTATCCGCCAAAATC
TGCGGCGTTTCCGCGCCTTGGTACGGTGTTTCGGCACCGAAGGCCCCCCA
AAGAACTTGCCCAAATATCGATATTTGCCCAACCCAAAATATCGATTTGC
TCGCCGCGTGGCCCCAAATTGCAATTTTTCTTTGTGCGCAGGAATACAAC
AAGTACCTGCACCAGCTTTCCAACCACTCGGGCGCAGCCAACTGGCTCAC
C
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig91:243203..251203-

>mRNA_S-ischiensis_contig91.20909.1 ID=mRNA_S-ischiensis_contig91.20909.1|Name=mRNA_S-ischiensis_contig91.20909.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1038bp|location=Sequence derived from alignment at S-ischiensis_contig91:243203..251203- (Schizocladia ischiensis KU_0333)
ATGGAGAGCACTCCCGAGCAGGCGGCGGAGGGGCGGGCACTGGTGACTGT
GCTGGCATGCGTGCTGAACAAGCTGGTGGAGGCCAACGCGAGCAACGGGA
TGGAGAGCACTCCCGAGCAGGCGGCGGAGGGGCGGGCACTGGTGACTGTG
CTGGCATGCGTGCTGAACAAGCTGGTGGAGGCCAACGCGAGCAACGGGCA
CGGCGCCACGCTGGAGGCGGGATCGGTTACAAAGTTCCACGCGTTGCAGC
CCCCGGGCATCAGCGTGGCGGACTATCTGTTCCGGATCCACAAGTACTCC
AGCTGCAGCAACCAGTGCTTTGTGCTGGGGCTTGTCTACGTGGACCGCCT
GATATCCATGAACAACTTTGCGCTCACGGCGCTCAACGTGCACCGCGTGG
CCATCACCAGCACGGCGCCACGCTGGAGGCGGGATCGGTTACAAAGTTCC
ACGCGTTGCAGCCCCCGGGCATCAGCGTGGCGGACTATCTGTTCCGGATC
CACAAGTACTCCAGCTGCAGCAACCAGTGCTTTGTGCTGGGGCTTGTCTA
CGTGGACCGCCTGATATCCATGAACAACTTTGCGCTCACGGCGCTCAACG
TGCACCGCGTGGCCATCACCAGCGTGATGGTGGCGGCCAAGTTTTTTGAC
GACATGTACTACAACAATGCATACTACGCAAAGCGTGATGGTGGCGGCCA
AGTTTTTTGACGACATGTACTACAACAATGCATACTACGCAAAGGTGGGA
GGCGTCCCCTGCTCCGAGATCAACTCCCTGGAGATGGAATTCCTCTTCCG
CATCAAGTTCCACCTACACGTCACCGCACAGGTGGGAGGCGTCCCCTGCT
CCGAGATCAACTCCCTGGAGATGGAATTCCTCTTCCGCATCAAGTTCCAC
CTACACGTCACCGCACAGGAATACAACAAGTACCTGCACCAGCTTTCCAA
CCACTCGGGCGCAGCCAACTGGCTCACCGAATACAACAAGTACCTGCACC
AGCTTTCCAACCACTCGGGCGCAGCCAACTGGCTCACC
back to top