mRNA_S-ischiensis_contig91.20908.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20908.1
Unique NamemRNA_S-ischiensis_contig91.20908.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:239593..240502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size911
Cds size834
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.8174121-CDS-S-ischiensis_contig91:239592..2404261622817412.8174121-CDS-S-ischiensis_contig91:239592..240426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 239593..240426 +
1695741095.8763626-CDS-S-ischiensis_contig91:239592..2404261695741095.8763626-CDS-S-ischiensis_contig91:239592..240426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 239593..240426 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.8292167-UTR-S-ischiensis_contig91:240426..2405021622817412.8292167-UTR-S-ischiensis_contig91:240426..240502Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 240427..240502 +
1695741095.8875427-UTR-S-ischiensis_contig91:240426..2405021695741095.8875427-UTR-S-ischiensis_contig91:240426..240502Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 240427..240502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20908.1prot_S-ischiensis_contig91.20908.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 239593..240426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20908.1

>prot_S-ischiensis_contig91.20908.1 ID=prot_S-ischiensis_contig91.20908.1|Name=mRNA_S-ischiensis_contig91.20908.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=278bp
WRCRGDRGTTHDRSRRRCRRHHRARQHHAVPLQWGAGVASPPTRTRRGHD
NHPGGDRCRRCRRLRRCPPIQHPPLPPGSLHHAAGHPGAAISAPAAAAVG
GVGEAGRCGGAQACPAAGGQAAAAAALGGGRGGGLGGGGAGAGACRHRHR
GRAHTGLRGRSPVPPVAVAAVVAGGAGTAALPPPRLLCPPPGEGKRRGRR
QGECPPRGVPKRGSTRTHPGQAVEGARRRPRLRGVAWPARHLLAVAGAPR
GRLRSGGGGRAETMEPLHRLGALGRQQ*
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mRNA from alignment at S-ischiensis_contig91:239593..240502+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20908.1 ID=mRNA_S-ischiensis_contig91.20908.1|Name=mRNA_S-ischiensis_contig91.20908.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=910bp|location=Sequence derived from alignment at S-ischiensis_contig91:239593..240502+ (Schizocladia ischiensis KU_0333)
TGGCGGTGCCGTGGTGACCGCGGTACAACACATGACCGCTCCCGCCGCCG
CTGCCGCCGCCACCATCGTGCACGTCAACACCATGCGGTGCCCCTGCAGT
GGGGCGCGGGGGTAGCGTCGCCGCCGACTCGAACCCGTCGAGGCCACGAC
AACCACCCCGGCGGGGACCGCTGCCGCCGCTGCCGCCGCCTCCGCCGCTG
CCCTCCCATTCAACACCCGCCACTCCCCCCGGGCTCCCTTCACCACGCAG
CGGGGCACCCCGGGGCGGCGATCTCTGCCCCTGCTGCCGCAGCTGTGGGT
GGGGTAGGGGAAGCGGGCCGCTGTGGCGGTGCTCAAGCTTGTCCTGCTGC
CGGCGGCCAAGCTGCCGCTGCTGCTGCTCTTGGTGGTGGTCGTGGTGGTG
GCCTTGGCGGTGGTGGTGCTGGTGCTGGTGCCTGCCGCCACCGCCACCGT
GGTCGAGCCCATACCGGTCTCCGGGGGAGGTCTCCTGTGCCGCCAGTTGC
TGTTGCTGCCGTGGTGGCGGGTGGTGCGGGTACAGCTGCCCTTCCCCCCC
CACGCCTCCTCTGCCCACCCCCCGGGGAGGGAAAGCGCCGCGGCCGCCGC
CAGGGGGAGTGTCCACCCCGGGGCGTGCCAAAGCGTGGGAGTACTCGTAC
GCACCCTGGGCAGGCGGTAGAAGGCGCTCGGCGCCGTCCGCGACTGCGGG
GGGTTGCATGGCCGGCCCGGCATCTGTTGGCGGTTGCAGGTGCTCCACGA
GGCCGCCTGCGCTCGGGTGGCGGTGGCCGCGCTGAGACAATGGAGCCCCT
GCACCGCTTGGGAGCTCTGGGGCGCCAGCAGTAGCAGCCACAGCGGCCAG
GTCCGGGGCGATGGACGCCATTCCAGCGGCGTCAAACCCCACGGAGGAAA
CGACTAACGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig91:239593..240502+

>mRNA_S-ischiensis_contig91.20908.1 ID=mRNA_S-ischiensis_contig91.20908.1|Name=mRNA_S-ischiensis_contig91.20908.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1668bp|location=Sequence derived from alignment at S-ischiensis_contig91:239593..240502+ (Schizocladia ischiensis KU_0333)
TGGCGGTGCCGTGGTGACCGCGGTACAACACATGACCGCTCCCGCCGCCG
CTGCCGCCGCCACCATCGTGCACGTCAACACCATGCGGTGCCCCTGCAGT
GGGGCGCGGGGGTAGCGTCGCCGCCGACTCGAACCCGTCGAGGCCACGAC
AACCACCCCGGCGGGGACCGCTGCCGCCGCTGCCGCCGCCTCCGCCGCTG
CCCTCCCATTCAACACCCGCCACTCCCCCCGGGCTCCCTTCACCACGCAG
CGGGGCACCCCGGGGCGGCGATCTCTGCCCCTGCTGCCGCAGCTGTGGGT
GGGGTAGGGGAAGCGGGCCGCTGTGGCGGTGCTCAAGCTTGTCCTGCTGC
CGGCGGCCAAGCTGCCGCTGCTGCTGCTCTTGGTGGTGGTCGTGGTGGTG
GCCTTGGCGGTGGTGGTGCTGGTGCTGGTGCCTGCCGCCACCGCCACCGT
GGTCGAGCCCATACCGGTCTCCGGGGGAGGTCTCCTGTGCCGCCAGTTGC
TGTTGCTGCCGTGGTGGCGGGTGGTGCGGGTACAGCTGCCCTTCCCCCCC
CACGCCTCCTCTGCCCACCCCCCGGGGAGGGAAAGCGCCGCGGCCGCCGC
CAGGGGGAGTGTCCACCCCGGGGCGTGCCAAAGCGTGGGAGTACTCGTAC
GCACCCTGGGCAGGCGGTAGAAGGCGCTCGGCGCCGTCCGCGACTGCGGG
GGGTTGCATGGCCGGCCCGGCATCTGTTGGCGGTTGCAGGTGCTCCACGA
GGCCGCCTGCGCTCGGGTGGCGGTGGCCGCGCTGAGACAATGGAGCCCCT
GCACCGCTTGGGAGCTCTGGGGCGCCAGCAGTAGTGGCGGTGCCGTGGTG
ACCGCGGTACAACACATGACCGCTCCCGCCGCCGCTGCCGCCGCCACCAT
CGTGCACGTCAACACCATGCGGTGCCCCTGCAGTGGGGCGCGGGGGTAGC
GTCGCCGCCGACTCGAACCCGTCGAGGCCACGACAACCACCCCGGCGGGG
ACCGCTGCCGCCGCTGCCGCCGCCTCCGCCGCTGCCCTCCCATTCAACAC
CCGCCACTCCCCCCGGGCTCCCTTCACCACGCAGCGGGGCACCCCGGGGC
GGCGATCTCTGCCCCTGCTGCCGCAGCTGTGGGTGGGGTAGGGGAAGCGG
GCCGCTGTGGCGGTGCTCAAGCTTGTCCTGCTGCCGGCGGCCAAGCTGCC
GCTGCTGCTGCTCTTGGTGGTGGTCGTGGTGGTGGCCTTGGCGGTGGTGG
TGCTGGTGCTGGTGCCTGCCGCCACCGCCACCGTGGTCGAGCCCATACCG
GTCTCCGGGGGAGGTCTCCTGTGCCGCCAGTTGCTGTTGCTGCCGTGGTG
GCGGGTGGTGCGGGTACAGCTGCCCTTCCCCCCCCACGCCTCCTCTGCCC
ACCCCCCGGGGAGGGAAAGCGCCGCGGCCGCCGCCAGGGGGAGTGTCCAC
CCCGGGGCGTGCCAAAGCGTGGGAGTACTCGTACGCACCCTGGGCAGGCG
GTAGAAGGCGCTCGGCGCCGTCCGCGACTGCGGGGGGTTGCATGGCCGGC
CCGGCATCTGTTGGCGGTTGCAGGTGCTCCACGAGGCCGCCTGCGCTCGG
GTGGCGGTGGCCGCGCTGAGACAATGGAGCCCCTGCACCGCTTGGGAGCT
CTGGGGCGCCAGCAGTAG
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