mRNA_S-ischiensis_contig91.20907.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20907.1
Unique NamemRNA_S-ischiensis_contig91.20907.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:239204..239535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size332
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.7819853-CDS-S-ischiensis_contig91:239203..2395331622817412.7819853-CDS-S-ischiensis_contig91:239203..239533Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 239204..239533 +
1695741095.8672452-CDS-S-ischiensis_contig91:239203..2395331695741095.8672452-CDS-S-ischiensis_contig91:239203..239533Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 239204..239533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20907.1prot_S-ischiensis_contig91.20907.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 239204..239533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20907.1

>prot_S-ischiensis_contig91.20907.1 ID=prot_S-ischiensis_contig91.20907.1|Name=mRNA_S-ischiensis_contig91.20907.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=110bp
PAASAAFGGGASIPSLGQTVGLPAAQTGSGGARDDEANLRPGNPPPLRAA
GCPLLFPRLRRVVVPLLPVPAAHSAAKTSSLLLAPPLLLLLLLGRGPRLV
GVVLAAAATA
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mRNA from alignment at S-ischiensis_contig91:239204..239535+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20907.1 ID=mRNA_S-ischiensis_contig91.20907.1|Name=mRNA_S-ischiensis_contig91.20907.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=332bp|location=Sequence derived from alignment at S-ischiensis_contig91:239204..239535+ (Schizocladia ischiensis KU_0333)
CCAGCTGCCTCCGCCGCCTTTGGGGGGGGGGCCAGCATACCATCCCTGGG
CCAAACAGTCGGTCTCCCCGCGGCCCAAACCGGCAGTGGCGGCGCTCGTG
ACGACGAGGCCAACCTCAGGCCGGGAAACCCACCCCCCCTCCGGGCGGCC
GGGTGTCCACTCTTGTTCCCCCGCCTCAGGCGAGTGGTGGTGCCCCTGCT
GCCCGTCCCTGCCGCCCACAGTGCCGCCAAGACCTCCTCCCTCCTCCTCG
CGCCACCGCTGCTGCTGCTGCTGCTGCTGGGCAGAGGGCCAAGGCTGGTG
GGAGTGGTGTTGGCCGCCGCCGCCACCGCCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig91:239204..239535+

>mRNA_S-ischiensis_contig91.20907.1 ID=mRNA_S-ischiensis_contig91.20907.1|Name=mRNA_S-ischiensis_contig91.20907.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=660bp|location=Sequence derived from alignment at S-ischiensis_contig91:239204..239535+ (Schizocladia ischiensis KU_0333)
CCAGCTGCCTCCGCCGCCTTTGGGGGGGGGGCCAGCATACCATCCCTGGG
CCAAACAGTCGGTCTCCCCGCGGCCCAAACCGGCAGTGGCGGCGCTCGTG
ACGACGAGGCCAACCTCAGGCCGGGAAACCCACCCCCCCTCCGGGCGGCC
GGGTGTCCACTCTTGTTCCCCCGCCTCAGGCGAGTGGTGGTGCCCCTGCT
GCCCGTCCCTGCCGCCCACAGTGCCGCCAAGACCTCCTCCCTCCTCCTCG
CGCCACCGCTGCTGCTGCTGCTGCTGCTGGGCAGAGGGCCAAGGCTGGTG
GGAGTGGTGTTGGCCGCCGCCGCCACCGCCCCAGCTGCCTCCGCCGCCTT
TGGGGGGGGGGCCAGCATACCATCCCTGGGCCAAACAGTCGGTCTCCCCG
CGGCCCAAACCGGCAGTGGCGGCGCTCGTGACGACGAGGCCAACCTCAGG
CCGGGAAACCCACCCCCCCTCCGGGCGGCCGGGTGTCCACTCTTGTTCCC
CCGCCTCAGGCGAGTGGTGGTGCCCCTGCTGCCCGTCCCTGCCGCCCACA
GTGCCGCCAAGACCTCCTCCCTCCTCCTCGCGCCACCGCTGCTGCTGCTG
CTGCTGCTGGGCAGAGGGCCAAGGCTGGTGGGAGTGGTGTTGGCCGCCGC
CGCCACCGCC
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