mRNA_S-ischiensis_contig91.20905.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20905.1
Unique NamemRNA_S-ischiensis_contig91.20905.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:229978..230373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.7377045-CDS-S-ischiensis_contig91:229977..2303401622817412.7377045-CDS-S-ischiensis_contig91:229977..230340Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 229978..230340 +
1695741095.8491278-CDS-S-ischiensis_contig91:229977..2303401695741095.8491278-CDS-S-ischiensis_contig91:229977..230340Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 229978..230340 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.7513325-UTR-S-ischiensis_contig91:230340..2303731622817412.7513325-UTR-S-ischiensis_contig91:230340..230373Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 230341..230373 +
1695741095.858092-UTR-S-ischiensis_contig91:230340..2303731695741095.858092-UTR-S-ischiensis_contig91:230340..230373Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 230341..230373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20905.1prot_S-ischiensis_contig91.20905.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 229978..230340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20905.1

>prot_S-ischiensis_contig91.20905.1 ID=prot_S-ischiensis_contig91.20905.1|Name=mRNA_S-ischiensis_contig91.20905.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=121bp
PAHVRPCNAARSPSLPPRGPFLPDFKIRGSCRGRRGCRLGRGRSLRGHHE
VPSPGPDTRPGDGRRFEVRGALPAQSSRSWTRRSGPYDGRALVEGRGHRH
STTGSADGKQSPREARHCAP*
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mRNA from alignment at S-ischiensis_contig91:229978..230373+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20905.1 ID=mRNA_S-ischiensis_contig91.20905.1|Name=mRNA_S-ischiensis_contig91.20905.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=396bp|location=Sequence derived from alignment at S-ischiensis_contig91:229978..230373+ (Schizocladia ischiensis KU_0333)
CCTGCCCACGTTCGCCCTTGCAATGCGGCTCGCAGCCCGTCTCTCCCTCC
GCGCGGCCCGTTCCTGCCGGATTTCAAAATCCGAGGCTCTTGCAGAGGCC
GACGTGGGTGTCGGCTCGGAAGAGGGAGGAGCCTCCGAGGACATCATGAG
GTGCCCAGCCCCGGGCCCGATACTCGCCCAGGCGACGGAAGACGGTTTGA
AGTGCGAGGCGCGTTGCCAGCTCAATCGAGTCGATCGTGGACGCGTCGCT
CCGGCCCGTACGACGGCCGCGCCCTGGTAGAAGGCAGAGGCCATCGACAC
AGCACGACAGGCAGTGCAGACGGCAAGCAATCGCCTCGAGAAGCCCGGCA
TTGTGCCCCCTAGCCCTACGCGGTCGTGCCACCTCGTACACGCCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig91:229978..230373+

>mRNA_S-ischiensis_contig91.20905.1 ID=mRNA_S-ischiensis_contig91.20905.1|Name=mRNA_S-ischiensis_contig91.20905.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=726bp|location=Sequence derived from alignment at S-ischiensis_contig91:229978..230373+ (Schizocladia ischiensis KU_0333)
CCTGCCCACGTTCGCCCTTGCAATGCGGCTCGCAGCCCGTCTCTCCCTCC
GCGCGGCCCGTTCCTGCCGGATTTCAAAATCCGAGGCTCTTGCAGAGGCC
GACGTGGGTGTCGGCTCGGAAGAGGGAGGAGCCTCCGAGGACATCATGAG
GTGCCCAGCCCCGGGCCCGATACTCGCCCAGGCGACGGAAGACGGTTTGA
AGTGCGAGGCGCGTTGCCAGCTCAATCGAGTCGATCGTGGACGCGTCGCT
CCGGCCCGTACGACGGCCGCGCCCTGGTAGAAGGCAGAGGCCATCGACAC
AGCACGACAGGCAGTGCAGACGGCAAGCAATCGCCTCGAGAAGCCCGGCA
TTGTGCCCCCTAGCCTGCCCACGTTCGCCCTTGCAATGCGGCTCGCAGCC
CGTCTCTCCCTCCGCGCGGCCCGTTCCTGCCGGATTTCAAAATCCGAGGC
TCTTGCAGAGGCCGACGTGGGTGTCGGCTCGGAAGAGGGAGGAGCCTCCG
AGGACATCATGAGGTGCCCAGCCCCGGGCCCGATACTCGCCCAGGCGACG
GAAGACGGTTTGAAGTGCGAGGCGCGTTGCCAGCTCAATCGAGTCGATCG
TGGACGCGTCGCTCCGGCCCGTACGACGGCCGCGCCCTGGTAGAAGGCAG
AGGCCATCGACACAGCACGACAGGCAGTGCAGACGGCAAGCAATCGCCTC
GAGAAGCCCGGCATTGTGCCCCCTAG
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