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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-27_006200.1 |
| Exons | 2 |
| Model size | 637 |
| Cds size | 411 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817414.4241645-UTR-S-ischiensis_contig91:196433..196521 | 1622817414.4241645-UTR-S-ischiensis_contig91:196433..196521 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig91 196434..196521 + |
| 1695741097.1543438-UTR-S-ischiensis_contig91:196433..196521 | 1695741097.1543438-UTR-S-ischiensis_contig91:196433..196521 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig91 196434..196521 + |
| 1622817414.4619868-UTR-S-ischiensis_contig91:197337..197475 | 1622817414.4619868-UTR-S-ischiensis_contig91:197337..197475 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig91 197338..197475 + |
| 1695741097.1963403-UTR-S-ischiensis_contig91:197337..197475 | 1695741097.1963403-UTR-S-ischiensis_contig91:197337..197475 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig91 197338..197475 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817414.4376752-CDS-S-ischiensis_contig91:196521..196677 | 1622817414.4376752-CDS-S-ischiensis_contig91:196521..196677 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig91 196522..196677 + |
| 1695741097.1745272-CDS-S-ischiensis_contig91:196521..196677 | 1695741097.1745272-CDS-S-ischiensis_contig91:196521..196677 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig91 196522..196677 + |
| 1622817414.449252-CDS-S-ischiensis_contig91:197082..197337 | 1622817414.449252-CDS-S-ischiensis_contig91:197082..197337 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig91 197083..197337 + |
| 1695741097.185612-CDS-S-ischiensis_contig91:197082..197337 | 1695741097.185612-CDS-S-ischiensis_contig91:197082..197337 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig91 197083..197337 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig91.20902.1 >prot_S-ischiensis_contig91.20902.1 ID=prot_S-ischiensis_contig91.20902.1|Name=mRNA_S-ischiensis_contig91.20902.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=137bp
MSMAVGLIVAAGSYLHVSNELAGRRNALMKKHLMAEEVDLYQPAPSRFVS
EQFHAWMGSANAARAVAATHRLHDTALEKEHALMSTLRRGWNGGVMKARD
AIVDVLYSPPPPAAGGEAGGEGTGAPSSSGEGSESQ* back to topmRNA from alignment at S-ischiensis_contig91:196434..197475+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig91.20902.1 ID=mRNA_S-ischiensis_contig91.20902.1|Name=mRNA_S-ischiensis_contig91.20902.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1042bp|location=Sequence derived from alignment at S-ischiensis_contig91:196434..197475+ (Schizocladia ischiensis KU_0333)
CGGGGAAGTTAGGGCAGCTGCACGTCAGAAACTGTGGGCAGCTGCAGCAG
CTGCGCCCCCTCCACATTGCTCCTGCAGCTTCTCGAACATGTCTATGGCC
GTGGGTCTGATCGTGGCGGCGGGGAGTTACCTACACGTTTCAAATGAGCT
GGCCGGGAGAAGGAACGCCTTGATGAAGAAGCACCTGATGGCGGAGGAGG
TTGACCTGTACCAGCCTGCGCCCTCCCGCTTCGTGAGCGAGCAGGCAAGG
GCCCTTTGTGTCGATTTTCTTATTTCTTCTTGCCCTTTTGGGGAGTCTCT
GCTTCGTGGTGTATTGATTCCTCGAGTGCTGGTGATCGCTCGCAGTGTCT
GCAGGCCGTGATTCATACTCCGTACATAGCTCCACCTCTTTGGCCGACAA
TATCTCGAGTCCCGTCAAAGGGGTGCTGTGAACCTGGGGGGGGGGGGGCA
ATCGGCAGCTAGATTCGACGCTGGTAAGCGAAGTGAGGTTCCGCTACATA
CAACTACTGTACTTGTAGGCATCTACAGATGTTACTGCCTGCTGCTTCCC
CAAGTCCCGATCTTGGTTCTGGTGCATGCGGACTGGCCGCCAAGCAAAAT
CCACGAGGATAACTCCTCTTAAACCCCCACTGGCCGCGCACCCTTCCAGT
TCCACGCATGGATGGGCTCCGCCAATGCAGCCCGTGCTGTGGCTGCCACC
CACCGGTTGCATGACACGGCATTGGAGAAGGAGCACGCTTTGATGTCGAC
CCTCCGCAGGGGGTGGAACGGGGGCGTGATGAAGGCCCGCGACGCTATAG
TGGACGTTTTGTACTCGCCGCCCCCGCCTGCGGCTGGTGGGGAGGCTGGG
GGCGAGGGCACTGGCGCCCCTTCAAGTAGTGGCGAGGGCAGTGAGAGCCA
GTGATAGCACATTAATGATAGTAATGATACCATTCGATTGTGCAAAGGCG
ACTGCAAGGAATGTGGCAAGTCTCGTGAAACGAAGCACCGCTCCCCCCCA
GGCCTGCCACCCTGGCGGTGTCTCAGCTACCGTAATCTTAGC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig91:196434..197475+ >mRNA_S-ischiensis_contig91.20902.1 ID=mRNA_S-ischiensis_contig91.20902.1|Name=mRNA_S-ischiensis_contig91.20902.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=822bp|location=Sequence derived from alignment at S-ischiensis_contig91:196434..197475+ (Schizocladia ischiensis KU_0333)
ATGTCTATGGCCGTGGGTCTGATCGTGGCGGCGGGGAGTTACCTACACGT
TTCAAATGAGCTGGCCGGGAGAAGGAACGCCTTGATGAAGAAGCACCTGA
TGGCGGAGGAGGTTGACCTGTACCAGCCTGCGCCCTCCCGCTTCGTGAGC
GAGCAGATGTCTATGGCCGTGGGTCTGATCGTGGCGGCGGGGAGTTACCT
ACACGTTTCAAATGAGCTGGCCGGGAGAAGGAACGCCTTGATGAAGAAGC
ACCTGATGGCGGAGGAGGTTGACCTGTACCAGCCTGCGCCCTCCCGCTTC
GTGAGCGAGCAGTTCCACGCATGGATGGGCTCCGCCAATGCAGCCCGTGC
TGTGGCTGCCACCCACCGGTTGCATGACACGGCATTGGAGAAGGAGCACG
CTTTGATGTCGACCCTCCGCAGGGGGTGGAACGGGGGCGTGATGAAGGCC
CGCGACGCTATAGTGGACGTTTTGTACTCGCCGCCCCCGCCTGCGGCTGG
TGGGGAGGCTGGGGGCGAGGGCACTGGCGCCCCTTCAAGTAGTGGCGAGG
GCAGTGAGAGCCAGTGATTCCACGCATGGATGGGCTCCGCCAATGCAGCC
CGTGCTGTGGCTGCCACCCACCGGTTGCATGACACGGCATTGGAGAAGGA
GCACGCTTTGATGTCGACCCTCCGCAGGGGGTGGAACGGGGGCGTGATGA
AGGCCCGCGACGCTATAGTGGACGTTTTGTACTCGCCGCCCCCGCCTGCG
GCTGGTGGGGAGGCTGGGGGCGAGGGCACTGGCGCCCCTTCAAGTAGTGG
CGAGGGCAGTGAGAGCCAGTGA back to top
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