mRNA_S-ischiensis_contig90.20885.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20885.1
Unique NamemRNA_S-ischiensis_contig90.20885.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:507595..508432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size838
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20885.1prot_S-ischiensis_contig90.20885.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 507610..508164 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817408.1303325-UTR-S-ischiensis_contig90:507594..5076091622817408.1303325-UTR-S-ischiensis_contig90:507594..507609Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 507595..507609 +
1695741092.2825327-UTR-S-ischiensis_contig90:507594..5076091695741092.2825327-UTR-S-ischiensis_contig90:507594..507609Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 507595..507609 +
1622817408.1525419-UTR-S-ischiensis_contig90:508164..5084321622817408.1525419-UTR-S-ischiensis_contig90:508164..508432Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 508165..508432 +
1695741092.3071132-UTR-S-ischiensis_contig90:508164..5084321695741092.3071132-UTR-S-ischiensis_contig90:508164..508432Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 508165..508432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817408.1418438-CDS-S-ischiensis_contig90:507609..5081641622817408.1418438-CDS-S-ischiensis_contig90:507609..508164Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 507610..508164 +
1695741092.294645-CDS-S-ischiensis_contig90:507609..5081641695741092.294645-CDS-S-ischiensis_contig90:507609..508164Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 507610..508164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20885.1

>prot_S-ischiensis_contig90.20885.1 ID=prot_S-ischiensis_contig90.20885.1|Name=mRNA_S-ischiensis_contig90.20885.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=185bp
MYHRTVLRNSKYDLEDSWQKAPPGPPPQGRGKVSQNKDRHKHTHCNWRTK
VHLPVLYFKSTYLQHAAVSHATFPRKRWHTHCDIDTFSSNHCECTHSAHA
LRLTAADSRPPIKMLSIQVLEHPWPGRGTLWQAVPLSGPLTGRNMQCWDC
SPMHCHRLEGLDLSRHHLSPLLHRSTTIVCTRVL*
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mRNA from alignment at S-ischiensis_contig90:507595..508432+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20885.1 ID=mRNA_S-ischiensis_contig90.20885.1|Name=mRNA_S-ischiensis_contig90.20885.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=838bp|location=Sequence derived from alignment at S-ischiensis_contig90:507595..508432+ (Schizocladia ischiensis KU_0333)
CGGCAGAGTTGACATATGTACCACCGCACTGTACTACGTAATTCGAAGTA
CGACTTGGAAGATAGTTGGCAGAAGGCACCGCCGGGTCCTCCGCCGCAAG
GTCGTGGCAAGGTGTCTCAAAACAAAGACCGGCACAAACATACTCACTGT
AATTGGAGGACAAAAGTACATTTGCCAGTACTGTACTTCAAGAGTACGTA
CTTACAGCACGCAGCAGTTTCTCACGCAACGTTCCCAAGGAAGCGGTGGC
ACACACACTGCGACATAGACACCTTCTCGAGCAATCATTGTGAATGTACA
CACAGCGCACACGCACTGCGTCTGACAGCTGCTGACTCCCGACCCCCTAT
CAAAATGTTGTCCATACAGGTGCTAGAGCACCCATGGCCTGGCCGAGGTA
CCCTGTGGCAGGCTGTCCCACTCTCAGGGCCGCTTACAGGCCGAAACATG
CAATGTTGGGACTGCTCGCCGATGCATTGTCACCGACTTGAGGGACTCGA
CCTTAGCCGCCATCATCTTTCCCCTCTCCTACATCGCAGTACTACAATTG
TGTGTACTCGAGTACTGTAGTACTGTAGATGCTATTCCTAGGTCCACACA
GACAGGGCACCTGTCCCTCCCCACCCGTTCGGCGCAATTGCAGAATATCC
CGGCCCAATCTACCTCGAAGTTGAGGTTATGGCACGGGTATGGCATCAAC
TACGGTACTGTACAGCAGTTGTAGAGCAATCACGAGGCCGCGTCGCGGCT
CTTAAACGACAGCCCCTTCAAGCCCTTCAAAGTACTAGTCAGGGTCCCCC
CAAGCCGATCCTTCTCCTTTTCCTTCTCCTCCTCCTTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig90:507595..508432+

>mRNA_S-ischiensis_contig90.20885.1 ID=mRNA_S-ischiensis_contig90.20885.1|Name=mRNA_S-ischiensis_contig90.20885.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1110bp|location=Sequence derived from alignment at S-ischiensis_contig90:507595..508432+ (Schizocladia ischiensis KU_0333)
ATGTACCACCGCACTGTACTACGTAATTCGAAGTACGACTTGGAAGATAG
TTGGCAGAAGGCACCGCCGGGTCCTCCGCCGCAAGGTCGTGGCAAGGTGT
CTCAAAACAAAGACCGGCACAAACATACTCACTGTAATTGGAGGACAAAA
GTACATTTGCCAGTACTGTACTTCAAGAGTACGTACTTACAGCACGCAGC
AGTTTCTCACGCAACGTTCCCAAGGAAGCGGTGGCACACACACTGCGACA
TAGACACCTTCTCGAGCAATCATTGTGAATGTACACACAGCGCACACGCA
CTGCGTCTGACAGCTGCTGACTCCCGACCCCCTATCAAAATGTTGTCCAT
ACAGGTGCTAGAGCACCCATGGCCTGGCCGAGGTACCCTGTGGCAGGCTG
TCCCACTCTCAGGGCCGCTTACAGGCCGAAACATGCAATGTTGGGACTGC
TCGCCGATGCATTGTCACCGACTTGAGGGACTCGACCTTAGCCGCCATCA
TCTTTCCCCTCTCCTACATCGCAGTACTACAATTGTGTGTACTCGAGTAC
TGTAGATGTACCACCGCACTGTACTACGTAATTCGAAGTACGACTTGGAA
GATAGTTGGCAGAAGGCACCGCCGGGTCCTCCGCCGCAAGGTCGTGGCAA
GGTGTCTCAAAACAAAGACCGGCACAAACATACTCACTGTAATTGGAGGA
CAAAAGTACATTTGCCAGTACTGTACTTCAAGAGTACGTACTTACAGCAC
GCAGCAGTTTCTCACGCAACGTTCCCAAGGAAGCGGTGGCACACACACTG
CGACATAGACACCTTCTCGAGCAATCATTGTGAATGTACACACAGCGCAC
ACGCACTGCGTCTGACAGCTGCTGACTCCCGACCCCCTATCAAAATGTTG
TCCATACAGGTGCTAGAGCACCCATGGCCTGGCCGAGGTACCCTGTGGCA
GGCTGTCCCACTCTCAGGGCCGCTTACAGGCCGAAACATGCAATGTTGGG
ACTGCTCGCCGATGCATTGTCACCGACTTGAGGGACTCGACCTTAGCCGC
CATCATCTTTCCCCTCTCCTACATCGCAGTACTACAATTGTGTGTACTCG
AGTACTGTAG
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