mRNA_S-ischiensis_contig90.20877.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20877.1
Unique NamemRNA_S-ischiensis_contig90.20877.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:385300..391308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size525
Cds size435
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20877.1prot_S-ischiensis_contig90.20877.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 385388..391308 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.4594648-UTR-S-ischiensis_contig90:385299..3853871622817407.4594648-UTR-S-ischiensis_contig90:385299..385387Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 385300..385387 +
1695741091.8689342-UTR-S-ischiensis_contig90:385299..3853871695741091.8689342-UTR-S-ischiensis_contig90:385299..385387Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 385300..385387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.4703715-CDS-S-ischiensis_contig90:385387..3855401622817407.4703715-CDS-S-ischiensis_contig90:385387..385540Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 385388..385540 +
1695741091.8795977-CDS-S-ischiensis_contig90:385387..3855401695741091.8795977-CDS-S-ischiensis_contig90:385387..385540Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 385388..385540 +
1622817407.4809031-CDS-S-ischiensis_contig90:387384..3875201622817407.4809031-CDS-S-ischiensis_contig90:387384..387520Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 387385..387520 +
1695741091.8892262-CDS-S-ischiensis_contig90:387384..3875201695741091.8892262-CDS-S-ischiensis_contig90:387384..387520Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 387385..387520 +
1622817407.4913855-CDS-S-ischiensis_contig90:388336..3884211622817407.4913855-CDS-S-ischiensis_contig90:388336..388421Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 388337..388421 +
1695741091.8988874-CDS-S-ischiensis_contig90:388336..3884211695741091.8988874-CDS-S-ischiensis_contig90:388336..388421Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 388337..388421 +
1622817407.501426-CDS-S-ischiensis_contig90:391247..3913081622817407.501426-CDS-S-ischiensis_contig90:391247..391308Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 391248..391308 +
1695741091.9085982-CDS-S-ischiensis_contig90:391247..3913081695741091.9085982-CDS-S-ischiensis_contig90:391247..391308Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 391248..391308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20877.1

>prot_S-ischiensis_contig90.20877.1 ID=prot_S-ischiensis_contig90.20877.1|Name=mRNA_S-ischiensis_contig90.20877.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=145bp
MYPRAASKAPAGPGVGGRRAQYPGGEQQSEVAWFRARTHHGSGQKERYDL
QTSVFLEEPPVRPQRGSDYLRDMHLSILRWDATEPPAAAAAAAAGGGSKV
EREGARLPAEEMMEGDAPDEAEEDGPAPGAIRNGPGAGNHGLNGI
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mRNA from alignment at S-ischiensis_contig90:385300..391308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20877.1 ID=mRNA_S-ischiensis_contig90.20877.1|Name=mRNA_S-ischiensis_contig90.20877.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6009bp|location=Sequence derived from alignment at S-ischiensis_contig90:385300..391308+ (Schizocladia ischiensis KU_0333)
GGCCTTCACTCGGCCTCACAGGGATTCGGGCTCCCCCGGGTAGCTGGGCC
GAGGATGTGAGCCCGCAAAGGCGGCTTCAGACGAACTGATGTATCCCCGG
GCGGCTAGCAAGGCCCCCGCGGGACCCGGGGTAGGAGGAAGACGTGCGCA
ATATCCGGGCGGGGAGCAGCAGTCGGAGGTGGCATGGTTCCGCGCCAGGA
CACATCATGGTAGCGGTCAGAAGGAGCGATATGACCTGCAGGTGCGCGGC
GCAGGCCAGCTAGAAATTCTCTTCCCCCGCGCCTGAGACCGGGCTGCGGT
CCCTCGGAATTGGTAGTGAGCACCGTGTGCGACTGCCCGCTCTGGGACGA
TCTTGAAGCACGGTTGTGGCAACGAGGCATTCCCAATGCCGGCCGACTGC
TTGCATGGAGTGGTTCAAGCCTTTGAGTCTCCCGGCTTGCGCCCGACACC
ACCTTGGCGCAAGCCCCACCTGTTTTTACTGTCTCACTGCAGTTCTCTCT
CTTCGGTATACGAAGTATCGTACCGAGGTCGTACTTCCGCCCTTGCGCTA
ATGCACGTGCACATGCGCACGCACACATACACATTGCCCTTCAACCCCGC
GGTTTTTGTCGCCGGGTTCGGGTAACCCGCCGGCTATGGCCAACTTGTCT
TTGTTGGGTAGGCTGGCCACGGCCACCTGTCCTTGTTGGGGAGGCTGGCT
ATGGCCAACCTCTCCGTTCTTTGTTGACGGGGGTATGTGTTTACAATACT
GGCGGTGGTCGACCTCTCCGTTGTTTGTTGGCGGGGGGTGTTGTTCACAA
TACTGGCGGTGGCCAGCCTCTCCGTTCTTTGTTGGCGGGGGGGGGTGTTT
ACGATACTGGCGGTGGCCAACCTCTCCGTTCTTTGTGGCGGGGGTGTGTG
TTTACAATACTGGCGGATTGCTATTATCTGGTAGATAGGCTTTCACGGAC
ACTTGTCCCTGGTGCGGCTTTGACGCCACACCACTCATGCCCGCGTGCGC
ACACGCACACACACACACACACACACACACACACAACACACAACACATGT
GAGTGAGCGGGCATGCCGCCCATGTCCTTGCCCGTGGTGCGGCTTCGACG
CCACGCCACTCGTGCGCACGCATGCACACACACACACACGCACGCATGCA
CGCACGCACACACACACACGCGCGCGCGCACACACACACTTGGTGCTGTG
CACCGCGGCGGTTTCGGTGCCGCGATTCGCTGTGGGGAAGGGCGCGAATA
ACGATTCGATGTGCGATGTTCATAACGTTAATATCCCGGCTAGTTGGCGG
TGCACAACGGTAATACACAAAGTACACGGCTACTCGTCGCCTCAAATATG
CCATGAACTTGGACCGGTTCGACATCGCGAGCATCGCGGCCGGCATGCTC
CACGCGCGATGCCTCCCAATCTGGCCGCGATATGCGATAAGCGATACGAT
GCAATGCACAGCACTAGCACGCGCGCACGTGAGTGAGCGATCGGGCATGA
GAAAATTCCCTCCCCCCCCTCCTTGGGTCCTTGATGTGACAATCACTACG
AGTACAGTAATATATTAACACTCCATTCTTACATGGGACAACTTCTAATA
CGAGAACAGTCAATCTCACACACGTGCGGTTGTACCTCGTTACAATTTAT
GTGAATCACCCCCTCCCCAGCAGACGAGTTTGTTCCTTGAGGAGCCGCCG
GTGCGGCCGCAGAGAGGGTCGGACTGTCTGAGGGACATGCACCTGTCCAT
CCTAGGGAATATCTAGGCAAATCAACCTATTTATCGACAGTACTGATCTA
CAGTATGTGTGTACTCATGGCGGATGGGGATCCCACCCTGTGCTTGCCAT
GGACTCGAGCCAGTATATTCGGTGCTGACCCACGTCGGTCCCCATACGGG
GTAGCCTTGCGGCCATTGGCAACGCTGATCTGCAGTATACCTTTTACATC
TATCGATAGTCGCTATTCGATAGTTTGACCGACACTAATTCCCAGTAGTT
ACTTAGTAACCCCACCCACAAAAACAGTCAAGCCCGACAACTATCTACTC
GTACTGACCGATATTCCATCACTGCACCCCGGCAGACGAGCGTGTTCCTT
GAGGAGCCGCCGGTGCGGCCGCAGAGAGGGTCGGACTACCTTCGGGACAT
GCACCTGTCAATCCTACGCTGGGACGCAACCGAACCGCCGGCGGCGGCAG
CGGCAGCGGCGGCCGGGGGAGGTGGGTGAAGTTTCGACCGCGGGAGGGAA
GGGGCTGGAGGAAGGGGGCTGGAGGAAGGGGGGTTGAGGATACCGTATAT
GCTGGTCCGGGCAAAAAAAGCCCCAAAACCTTCTGTGTCCGAAATGTCGG
CATCGAGTTGCGGCAAGCCGCGCACGCCGCAATGCTCCTGTCGCTGAGAC
GAAGGGATCAATGTGCCCCGTTGGTCCCAGAGCGACGTGGTCGTAGCGTA
ACGCCGACGTCAGCGCCATCGTCAACAGTTTGGGTGCTCCTATCGATGGA
GGCGTCGCCCGACTGGGCCGCGTTCACTATGGGGGATTAGTACGGGAGCA
CCTATCACAGGCAATTAATCCTAAACAACGTTACCTAAAGTTCTCGTTGC
AGTTTTGCGCGTTAAACCGATTGACTTGATTTCAGCGGAACTATGTAGAC
CAATAGTAACAACCGTATTGAGGGACCTTCTGCGTTTTTTCGTTTTGTTT
CGGCGAGATGTCTGGCCCTGAGGGATCTTCGATATGTCAAAATCTTTGAT
AGTGATCGAAAAAAATGAAAAATCGAACGGGTCCCGGAATGCATTTCTTT
GCCAAGGTCCCCTCCATGCCGTCCCACAATATCGTTGGCCCTCTATGCCG
TCCCACAATTTCGTTGGCCAACTCACAAAACTCGAGCGAGAGCTTTCCGC
GGAAGGTTTTCAGCTTTTTCAAAATGCCGCATTTACGCCTGGGAGACTCA
CCCTGGCCTCTCTCGTCTCTGTGCTCCCCCCCCCCCCTTGAAATCCTTTC
CGTTTTTTCTCCTCTTGTTGTCCATCTGTCTCCGCAGGCAGCAAGGTGGA
AAGAGAGGGAGCACGTCTGCCCGCAGAGGAGATGATGGAGGGAGACGCGC
CCGACGAGGCAGAGGAGGACGGGTGAGCGCTTTTTGTTAGAACATATGTA
TCCATGATGTTTAGAACGACACACATGGCCTCTTGTCCCCTATGCAAGAC
TCTTTACGGCCCCTTGTAGCACTCTCAGTCTAGGGATATCCTCCAGACTG
AGAGTGGTACAAGCCGCCGACGAGGCAGAGGAGGACGGGCGAATGCTTTG
GAGTGTTGATTGTGCACGGGCTATGTACATACGAGTACAGTAGCGGGCCC
CGTCCCATGCAGGCAGGCTATGTACACGCAGCAACAACCGGGGCCCATCC
CATGAGTGCGAGCTCAGCAGACGCGGCCGACGAGGCAGAGGAGGAAGTGT
GAGTGCTTTGGAGCGTTGATTTTGCGCATGCAGTAGTAGCGGCCGACGAG
GCAGAGGAGGATGGGTGAGTGCTTTGGAGTGAACGTGCACAGGCTATGTA
CATACAAGTACAGTACTGTAGTAGCGGCCGACGAGGCAGAGGAGGATGGG
TGAGTGCTTTGGAGTGAACGCGCACAACCTATTCACACACGAGTACTTGT
ACAGTATCAACAGGAACAACACAGGGCGAGGTGCAAGCCACGTCACTAAA
GACATCAACCGTGACCCTTCGTATGTACATACTAGTACAGTAGTAGCGGG
CCCCGTCCCATGCAGGCTATGTATATATATATGTACTCATTGGCTTGTCT
TGCGACATGACCTTGGATGCAAAGCTGACAGCCCTAGGTCGAAACTTCGG
GTTTGCCCTCCGACACGAGTAGCTATGTACAGTGCACACAGTAACAACCG
GGCCCCATCCCATGAATGACCTCAGCAGATGAGCTACCTCTTCTTTTTGT
CGGTGGGAGGAAATTCGGTTGTCAAGTCAAGCCTCGCATACAATAGGCGA
GAAGAGCGACACAACATCCATCTACTGCAACTGCTGTGACTGACGCGAGA
TATGGTACTACACTACACTACTGCTGCATTGTACAGTACTTTTCATGCCG
CCGGGGGGGTTCTGCTTCGTGTACTACAGTAGTATGGATAAAACCCTCAG
AAAGCCATGGTGCTACCTACTGTCAGTGATGGAATATCGACCCGATTTGT
TATGTATATCGACAAATATATCGATATAAGGACTTTGTGATGTATATATA
TATATATATCGATATATCGACATAGTGATATTATAGCCCATACCAAAACC
AAGTAGTTTCTTCCATGGGAGGCGTTTGCCCAGGTCGTCCTGACGCGCTC
GAAACTTAAAAATAGGAATACATCAGTCGATATGGCGTCGATATATGGGG
CGATCGTTATATTTATTCGATATTCCACCACTGCGTACTGTGCGTGCATG
AAAGGACTGTACTGGATGTGCAGCAGTGCCGCACGAGAACCCTACAACGG
TACTACATATATGTACTGTACTGCCTACTGTATAGCGCTCATCTACGCGA
GCGGAATACACTGACGGCTCTCGCGAGCCCAAGTTCGCGAGTTCGATTCC
CAGTGCAGGGCGATTTTCGCGTTTTTCCTGAACAATGGACCCCTCCCGAA
AACATGCGCAACATTGAGTAAACCATGGGCCGTACCGGCTTGTCGGCCTC
GGGCCTAATGGCAAAGTCGGGACCGGCGCCCGCCTGCCCGGTGAAAACCC
GGGATGCTCCGGCCTGGCGTAGTAGGGCTGCGTGGCCAATGGCCGCAAGG
CTACCCGGTATGGGGACCAACCAGGGTCAGCACGGAGTATACTGGCCCGA
GTCGGTGGCAAGTACAGGGTGGGATCCCCATCCGCCATGAGTACACACTG
CCTGCTGTGGTGCTGGAAGGACTGGATGTGCAGTAGTACCGCACGAGAAC
CCTACGGTACTTACCTGCTCCGTCTCGACCGAGGCACGTGGTCAATGGTC
TCGGGACTATGACAAGCACCACGTGAGTACATACTATGTATAGTATATGT
ATATTTACATGTACATTTGTACCCACATCAGAGCAGGGTAGGTGCTTACT
GCACATGCATAGCGTCAGCGCTACTCTACTCGAGTAAGCAAGCACTTGTG
TACGAGTCCGTAGACAACGTAGCGCATACAACTGTGTCAGGTGCTGTGTT
GTATTTTGCAGCGTGTAAGTGATATATAGCTCTGCTGCAGCACGCATGTA
CTCACATCGAACGGAGCCGGCCGTAGTCCCGAGACCATTCTTCCAAGTTG
ACCAGTCTGCATGGGCTGGCCGGCGGTCCAGCACGTAGTACGCTGCGCTG
ACAGTTGGTCGGCGGCATACACATGCCGGGGTGTCCCCTGTCCGACCCTG
CCATGCTACAGTGCAGTGCTTAATAGACTGTACTCAAGTGTATGTACTGT
ACTCGCGGTGTGCTTGTCGTAGTCCCGAGACAATTGACCACGCACCTCGA
TCGAGACGGAGCAGGTACTCGAATACGGATCACATTATCATCATATTTCA
TCACAGCGCTTCGCATCACATGTGTAGGATCGCCCTCATGGGACACATCA
TAAACGCGTGATATATGGACACATATGCCATGCTAAGTACTGTGAAGCGC
CTTAGAGTACACATGACACCACACGGAATGCTTCATGACGGGCCACCATT
GTGGCACACATCATATACCCCATGATGTGATGTCATGCCTTGCTACTCTC
TCTCTACATATGCACTCACGTTGTGCTTGCTGTAGTCCCGAGACCATTGA
CCACTACAGCACATATAGCAGCATATCATTTTACATACAACTACTTCGAA
GTACATGCAGGGTCGCCCCTGTGAGACGCATGGTAAACGGCCACACCCAA
CAACAGGCAACTCACGAGTACCCCCAACCCCCATCTCGGGACCATCAGCC
CCGCACCCGGCGCCATCCGAAACGGGCCCGGGGCAGGCAACCACGGCCTC
AATGGAATC
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Coding sequence (CDS) from alignment at S-ischiensis_contig90:385300..391308+

>mRNA_S-ischiensis_contig90.20877.1 ID=mRNA_S-ischiensis_contig90.20877.1|Name=mRNA_S-ischiensis_contig90.20877.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=870bp|location=Sequence derived from alignment at S-ischiensis_contig90:385300..391308+ (Schizocladia ischiensis KU_0333)
ATGTATCCCCGGGCGGCTAGCAAGGCCCCCGCGGGACCCGGGGTAGGAGG
AAGACGTGCGCAATATCCGGGCGGGGAGCAGCAGTCGGAGGTGGCATGGT
TCCGCGCCAGGACACATCATGGTAGCGGTCAGAAGGAGCGATATGACCTG
CAGATGTATCCCCGGGCGGCTAGCAAGGCCCCCGCGGGACCCGGGGTAGG
AGGAAGACGTGCGCAATATCCGGGCGGGGAGCAGCAGTCGGAGGTGGCAT
GGTTCCGCGCCAGGACACATCATGGTAGCGGTCAGAAGGAGCGATATGAC
CTGCAGACGAGCGTGTTCCTTGAGGAGCCGCCGGTGCGGCCGCAGAGAGG
GTCGGACTACCTTCGGGACATGCACCTGTCAATCCTACGCTGGGACGCAA
CCGAACCGCCGGCGGCGGCAGCGGCAGCGGCGGCCGGGGGAGACGAGCGT
GTTCCTTGAGGAGCCGCCGGTGCGGCCGCAGAGAGGGTCGGACTACCTTC
GGGACATGCACCTGTCAATCCTACGCTGGGACGCAACCGAACCGCCGGCG
GCGGCAGCGGCAGCGGCGGCCGGGGGAGGCAGCAAGGTGGAAAGAGAGGG
AGCACGTCTGCCCGCAGAGGAGATGATGGAGGGAGACGCGCCCGACGAGG
CAGAGGAGGACGGGCAGCAAGGTGGAAAGAGAGGGAGCACGTCTGCCCGC
AGAGGAGATGATGGAGGGAGACGCGCCCGACGAGGCAGAGGAGGACGGCC
CCGCACCCGGCGCCATCCGAAACGGGCCCGGGGCAGGCAACCACGGCCTC
AATGGAATCCCCCGCACCCGGCGCCATCCGAAACGGGCCCGGGGCAGGCA
ACCACGGCCTCAATGGAATC
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