mRNA_S-ischiensis_contig90.20874.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20874.1
Unique NamemRNA_S-ischiensis_contig90.20874.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig90.20874.1 vs. uniprot
Match: D7FJE4_ECTSI (Annexin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE4_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.960e-18
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 2 
Query:  116 TPEDVEGAENLPEILSAVSDEVEALKEWIAARDVEIVHDATSGLGTDEGRLMGALCNRTKPQLARIDRLYHEKYESSLLKEVSGEARG 379
            TPE ++ A N+ EI++ V +E+  LK ++A RDV++VH +  G+GT EG L+  LCNRTK Q+  +D LYHE +ESSLLK V  +  G
Sbjct:    6 TPEHIDTANNVGEIIAVVQEEISCLKGFVAERDVDVVHRSIKGIGTKEGNLINTLCNRTKKQIDAVDLLYHETHESSLLKAVKSDVSG 93
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BLAST of mRNA_S-ischiensis_contig90.20874.1 vs. uniprot
Match: A0A835YQ69_9STRA (Annexin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ69_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.040e-13
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 2 
Query:  107 ANLTPEDVEGAE--NLPEILSAVSDEVEALKEWIAARDVEIVHDATSGLGTDEGRLMGALCNRTKPQLARIDRLYHEKYESSLLKEVSGEARGG 382
            A++T   ++  E   LP++  A+++E +ALK++IAA D + VH ATSGLGTDE RL+  LCNRTK QL  +      +Y  +L + VSG+  GG
Sbjct:    6 ASVTDAQIDSMEPSKLPDVTKALAEENDALKKFIAAEDAKAVHKATSGLGTDESRLVEVLCNRTKAQLDLLSAASVAQYGKTLRQVVSGDVSGG 99
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BLAST of mRNA_S-ischiensis_contig90.20874.1 vs. uniprot
Match: D8LG01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG01_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 4.440e-8
Identity = 38/115 (33.04%), Postives = 59/115 (51.30%), Query Frame = 2 
Query:  131 EGAENLPEILSAVSDEVEALKEWIAARDVEIVHDATSGLGTDEGRLMGALCNRTKPQLARIDRLYHEKY----ESSLLKEVSGEARGGSCYILQSPTYLDA*IEVSQLLGFLGTQ 463
            EG +   + L  + +E + LK +IA  D E +  A  G+GT+EGR++G +C RTK Q+ RID +Y   Y       L K++SG+ +    Y        DA +    + G +GT 
Sbjct:  264 EGEDQDEKRLKLLEEENDGLKTYIAKVDAEQIWRACKGMGTNEGRVIGIICTRTKSQVERIDEMYRTMYGMTLREQLEKDLSGDLKTFMVYTQMETQEFDALLMKKAMAG-IGTD 377
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BLAST of mRNA_S-ischiensis_contig90.20874.1 vs. uniprot
Match: A2R5M9_ASPNC (Annexin n=17 Tax=Aspergillus TaxID=5052 RepID=A2R5M9_ASPNC)

HSP 1 Score: 53.9 bits (128), Expect = 4.230e-5
Identity = 26/56 (46.43%), Postives = 33/56 (58.93%), Query Frame = 2 
Query:  212 DVEIVHDATSGLGTDEGRLMGALCNRTKPQLARIDRLYHEKYESSLLKEVSGEARG 379
            D+  +HDA SGLGT+E  L   L  R+   LA I R Y +KY  SLL ++ GE  G
Sbjct:  279 DITYLHDAMSGLGTNETGLNDVLLGRSNADLAAIQRAYRDKYHKSLLDDIKGELSG 334
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FJE4_ECTSI1.960e-1848.86Annexin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A835YQ69_9STRA6.040e-1344.68Annexin n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
D8LG01_ECTSI4.440e-833.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A2R5M9_ASPNC4.230e-546.43Annexin n=17 Tax=Aspergillus TaxID=5052 RepID=A2R5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:371564..372944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue6.2e-17
Seed eggNOG ortholog2880.D7FJE4
EggNOG free text desc.calcium-dependent phospholipid binding
EggNOG OGsKOG0819@1,KOG0819@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size593
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20874.1prot_S-ischiensis_contig90.20874.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 371733..372847 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817410.9184885-UTR-S-ischiensis_contig90:371563..3717321622817410.9184885-UTR-S-ischiensis_contig90:371563..371732Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 371564..371732 -
1695741094.5408094-UTR-S-ischiensis_contig90:371563..3717321695741094.5408094-UTR-S-ischiensis_contig90:371563..371732Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 371564..371732 -
1622817410.9632907-UTR-S-ischiensis_contig90:372847..3729441622817410.9632907-UTR-S-ischiensis_contig90:372847..372944Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 372848..372944 -
1695741094.580016-UTR-S-ischiensis_contig90:372847..3729441695741094.580016-UTR-S-ischiensis_contig90:372847..372944Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 372848..372944 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817410.9374402-CDS-S-ischiensis_contig90:371732..3718221622817410.9374402-CDS-S-ischiensis_contig90:371732..371822Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 371733..371822 -
1695741094.5570972-CDS-S-ischiensis_contig90:371732..3718221695741094.5570972-CDS-S-ischiensis_contig90:371732..371822Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 371733..371822 -
1622817410.9497554-CDS-S-ischiensis_contig90:372610..3728471622817410.9497554-CDS-S-ischiensis_contig90:372610..372847Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 372611..372847 -
1695741094.5671513-CDS-S-ischiensis_contig90:372610..3728471695741094.5671513-CDS-S-ischiensis_contig90:372610..372847Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 372611..372847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20874.1

>prot_S-ischiensis_contig90.20874.1 ID=prot_S-ischiensis_contig90.20874.1|Name=mRNA_S-ischiensis_contig90.20874.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=109bp
MGNANLTPEDVEGAENLPEILSAVSDEVEALKEWIAARDVEIVHDATSGL
GTDEGRLMGALCNRTKPQLARIDRLYHEKYESSLLKEVSGEARGGSCYIL
QSPTYLDA*
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mRNA from alignment at S-ischiensis_contig90:371564..372944-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20874.1 ID=mRNA_S-ischiensis_contig90.20874.1|Name=mRNA_S-ischiensis_contig90.20874.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1381bp|location=Sequence derived from alignment at S-ischiensis_contig90:371564..372944- (Schizocladia ischiensis KU_0333)
CGAGCGTTCGTCGTCTCTGCTCAAGCCGCTGCCCCTCGGACAGACCTCGT
GGGAGCGCTCAGCGGAGAATCGGGGTGTCCGCTCTGACTGGGTCAACATG
GGGAACGCCAATCTCACCCCCGAAGACGTGGAAGGGGCAGAGAACCTTCC
CGAGATTCTCAGTGCCGTGTCTGATGAGGTCGAGGCGCTGAAGGAGTGGA
TCGCGGCCAGGGACGTGGAGATTGTGCACGATGCCACCTCAGGCCTGGGG
ACCGACGAAGGGCGGCTGATGGGCGCCCTGTGCAACCGCACCAAGCCTCA
GCTTGCCCGCATCGACCGGCTCTACCACGAAAAGGTGCGGGGCATGAACA
TGTAACTATTGGCCCCTCAGCCGCGGATTTGCTGCCGGTCCTGAGGGCAG
TTGATCTGCACGGTACGTGAGCGCTTTGCCACCTCCCTGATACCACCCTC
CTATACGGGGTGGGCTCTTTCTTCAACTCTGCCTTAGTGCTTCTACCTCA
ACTCTCCCTCAAGGGAACAATCATGCAGCCCTCCACCCACTGCGTGGGGC
GAAGAGCCCATGTTGCAATTCACGAGGGGAGCGCTAGACCACTATACTAC
CCTGCCACTGCCCTGCGCAGGGTAGTCTAGTGGTCTAGCAGCGCTCCCCT
CCTGAAATGCGAGAGCCTACTCCAGCAATGCTTCTGCATGTGATACTTCC
GGAAGTACAACAGAGCCCATTCCGCTCCCAGGGATACTTCGTGCACTTAG
AGTAGAGGGCGTGATGTACATGAGGGTGTGAAGTGCATGCACGAAGAGCG
ACTCCACATGTCATCCTCCTGGCGACACTCCCGTGTGATAATCACTAGCA
CGAGAACACTCAATTCTTAAATGGGACAACTACTACTACGAGAACACACA
CTCTCACACACGCGCGATTTACGTCGTTAAGCTGTATCCCTCCTGTGCGT
GTGCGTCTGAATGTCTGTGTCGCCGTTGACGTGAGGATTCGTACAAATTG
TAACGAGGGACAATTGCACGTGTGTGGGAGTGAGTCGTTGACGTGGCTCA
CTGCTGTCCGTCCGTTTGCCTTGTCGCCTCTGCCTGCGTGCTGTCTGTCT
GCACGTCTTTCCCTTTTTACAGTACGAGAGCAGCCTCCTGAAAGAAGTCT
CGGGGGAAGCCCGCGGTGGGTCCTGCTACATACTGCAGTCTCCTACCTAC
TTGGACGCTTGAATCGAAGTCTCCCAACTGCTTGGATTCTTGGGAACTCA
ATTCTCCCTATCTACTTGGATATTTTGATCCATGGTCTCGCACGTAATCG
AAGTCTCCCAACTACTTGCATTCTTGGGAACTCAATTCTCCCTAGCCACT
TGTGCTTGGATATTTTGATCCATGGTCTCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig90:371564..372944-

>mRNA_S-ischiensis_contig90.20874.1 ID=mRNA_S-ischiensis_contig90.20874.1|Name=mRNA_S-ischiensis_contig90.20874.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=654bp|location=Sequence derived from alignment at S-ischiensis_contig90:371564..372944- (Schizocladia ischiensis KU_0333)
ATGGGGAACGCCAATCTCACCCCCGAAGACGTGGAAGGGGCAGAGAACCT
TCCCGAGATTCTCAGTGCCGTGTCTGATGAGGTCGAGGCGCTGAAGGAGT
GGATCGCGGCCAGGGACGTGGAGATTGTGCACGATGCCACCTCAGGCCTG
GGGACCGACGAAGGGCGGCTGATGGGCGCCCTGTGCAACCGCACCAAGCC
TCAGCTTGCCCGCATCGACCGGCTCTACCACGAAAAGATGGGGAACGCCA
ATCTCACCCCCGAAGACGTGGAAGGGGCAGAGAACCTTCCCGAGATTCTC
AGTGCCGTGTCTGATGAGGTCGAGGCGCTGAAGGAGTGGATCGCGGCCAG
GGACGTGGAGATTGTGCACGATGCCACCTCAGGCCTGGGGACCGACGAAG
GGCGGCTGATGGGCGCCCTGTGCAACCGCACCAAGCCTCAGCTTGCCCGC
ATCGACCGGCTCTACCACGAAAAGTACGAGAGCAGCCTCCTGAAAGAAGT
CTCGGGGGAAGCCCGCGGTGGGTCCTGCTACATACTGCAGTCTCCTACCT
ACTTGGACGCTTGATACGAGAGCAGCCTCCTGAAAGAAGTCTCGGGGGAA
GCCCGCGGTGGGTCCTGCTACATACTGCAGTCTCCTACCTACTTGGACGC
TTGA
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