mRNA_S-ischiensis_contig90.20861.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig90.20861.1 vs. uniprot
Match: D7G2T7_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2T7_ECTSI) HSP 1 Score: 212 bits (539), Expect = 4.040e-56 Identity = 150/389 (38.56%), Postives = 208/389 (53.47%), Query Frame = 2
Query: 2 NVDDMFNISKELAINMVVFLVMAVSSRLVTLYGEEDMQQWMDPSHIFILGMSIVFWASVVEPMRRLAFDPLAATKRHYATRVLVTRKGHGQADTTA-----GRHHLPLHVVMGETAGSQVPHSYSSRHLVVLSTVCQAQ-REYIYTRVLAHVLLPASLLDFVDGVASYSIWISVGQTIEYRLSIDIRSVLSINSFICVDIPSLCVLGSLRL--------------------WQVWDFERLASTPMLAAAFERFAQRALCQESVLFLAEVSRYVSGDFACVGHVAGTLSEEQWQFAAFCHVTQTFICNGAPEEVNISAQDKRRILECYNGGREAFLGLSDEERRLIFGRAYAEVKAMLEDNLLQRFMLTPEFEQVRAQRETVTVMAGMSP 1090
NVDD+FNISKEL + V + +AV + +G Q+W+ ++I I +++F S+V+P+RRLA DPLAATKR+YA RVL++R TA GR P + +++ L T + + V+ + ++ S D D VA+ + W + + I + S +S ++ I + + G +VW+FERLA TP+LA AFE +++RALC ESVLFL EVSRY D+A A + QF FC++T TFI G+PEEVNIS DK+RILE Y G E F +++EERRLIFGRAY EVK+MLE NLL+RF+ T F+ VR QRE V M P
Sbjct: 138 NVDDLFNISKELLLVTVAIVCLAVVQKAAAEWGGVYEQRWVG-NNISIFIAAVLFGISIVDPLRRLAMDPLAATKRNYADRVLLSRTAPDSTVRTASGVSSGRSRDPSRIRANSEEEARLEEGDLGGVLDKDETTTAGDVSNVVASAVVGNGVITTSTADTNDAVAAGT-W-NEREPINTSVFTKQSSSVSNDTSIGGNRRDVVQRGPRERAFFRGRRGGGGGRGRPEREEMEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKDA--IRSSPSQFGTFCYITNTFIKAGSPEEVNISDADKKRILELYQKGEEHFEDVNEEERRLIFGRAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQTMMDSPP 521
BLAST of mRNA_S-ischiensis_contig90.20861.1 vs. uniprot
Match: D7G2T8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T8_ECTSI) HSP 1 Score: 214 bits (544), Expect = 5.020e-56 Identity = 149/386 (38.60%), Postives = 206/386 (53.37%), Query Frame = 2
Query: 2 NVDDMFNISKELAINMVVFLVMAVSSRLVTLYGEEDMQQWMDPSHIFILGMSIVFWASVVEPMRRLAFDPLAATKRHYATRVLV-------TRKGHGQADTTAGRHHL--------------PLHVVMGETAGSQVPHSYSSRHLVVLSTVCQAQREYIYTRVLAHVLLPASLLDFVDGVA--SYSIWISVGQTIEYRLSIDIRSVLSINSFICVDIPSLCVLGSLRLWQVWDFERLASTPMLAAAFERFAQRALCQESVLFLAEVSRYVSGDFACVGHVAGTLSEEQWQFAAFCHVTQTFICNGAPEEVNISAQDKRRILECYNGGREAFLGLSDEERRLIFGRAYAEVKAMLEDNLLQRFMLTPEFEQVRAQRETVTVMAGMSP 1090
NVDD+FNIS EL V +V+ + +V +G Q+W+ S+I ++ ++++F S+V P+RRLA DPLAATKR+YA RVL+ TR G + AGR L V G + S V S+ + A+V+ P + +A S S+ G T + R ++ R +VWDFERL TP+LAAAFE +++RALC ESVLFL+EVSRY + D+A + AGT QF FC++T TFI GAPEEVNIS +D++ ILE Y G E+F +++EERR++F R+Y EVK+MLE NLL+RF+ T +F+ VR QRE V M P
Sbjct: 232 NVDDLFNISTELITVTVTIVVVTIVQEVVDKWGGNFEQRWLT-SNISVVFVAVLFCISIVAPLRRLALDPLAATKRNYADRVLLSRTESHSTRSASGISPERAGRSSRIVDDSDDEVAFEDEELGGVPGMDTTAAAGVGGGSTGKVATSSAVVGSGVITTSTADANVVAPRTWKGREMTIANGSTSVPKGSGSTGKRRDAVQ-RGQRGRGXXXXXXXXXXXXPSDREEMEVWDFERLGRTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNDDYATPTNAAGTCPT---QFGTFCYITDTFIKAGAPEEVNISDKDRKLILELYQKGEESFEEVNEEERRMVFKRSYLEVKSMLEANLLRRFLNTDQFKSVRKQRENVQAMMDSPP 612
BLAST of mRNA_S-ischiensis_contig90.20861.1 vs. uniprot
Match: D7G2T5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T5_ECTSI) HSP 1 Score: 169 bits (428), Expect = 1.630e-43 Identity = 87/157 (55.41%), Postives = 112/157 (71.34%), Query Frame = 2
Query: 620 QVWDFERLASTPMLAAAFERFAQRALCQESVLFLAEVSRYVSGDFACVGHVAGTLSEEQWQFAAFCHVTQTFICNGAPEEVNISAQDKRRILECYNGGREAFLGLSDEERRLIFGRAYAEVKAMLEDNLLQRFMLTPEFEQVRAQRETVTVMAGMSP 1090
+VW+FERLA TP+LAAAFE +++RALC ESVLFL+EVSRY S D+A + S QF FC++T TFI G+PEEVNIS DK+ IL+ Y+ G E+F G+++E+RR+IF AY EVK+MLE NLL+RF+ T F+ VR QRE V M P
Sbjct: 118 EVWNFERLARTPLLAAAFEDYSKRALCHESVLFLSEVSRYQSDDYATSARPSSE-SSCPTQFGTFCYITDTFIKGGSPEEVNISDADKKAILDVYHKGEESFGGVNEEDRRMIFSPAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQAMMDSPP 273
BLAST of mRNA_S-ischiensis_contig90.20861.1 vs. uniprot
Match: A0A6H5LEP9_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEP9_9PHAE) HSP 1 Score: 174 bits (441), Expect = 9.810e-43 Identity = 143/401 (35.66%), Postives = 196/401 (48.88%), Query Frame = 2
Query: 2 NVDDMFNISKEL-AINMVVFLVMAVSSRLV--TLYGEEDMQQWMDPS---HIFILGMSIVFWASVVEPMRRLAFDPLAATKRHYATRVLVTRKGHGQADTTAGRHHLPLHVVMGETAGSQVPHSYSSRHLVVLS-----------TVCQA------QREYIYTRVLAHVLLPASLLDFVDGVA--------------SYSIWISVGQTIEYRLSIDIRSVLSINSFICVDIPSLCVLGSLRLWQVWDFERLASTPMLAAAFERFAQRALCQESVLFLAEVSRYVSGDFAC-VGHVAGTLSEEQWQFAAFCHVTQTFICNGAPEEVNISAQDKRRILECYNGGREAFLGLSDEERRLIFGRAYAEVKAMLEDNLLQRFMLTPEFEQVRAQRETVTVMAGMSP 1090
NVDD+FNISKEL + + + +V + V + + E +QQ + P+ + + S + SVV P+RRLA DPLAATKR+YA RVL++R + +G + E AG S V T A + + V+ ++ S D VA S S+ T + R ++ R +VWDFERL TP+LAAAFE +++RALC ESVLFL+EVSRY + D+A AGT QF FC +T TFI GAPEEVNI ++ ILE Y G E+F +++EERR++F R+Y VK+MLE NLL+RF+ T +F+ VR QRE V M P
Sbjct: 154 NVDDLFNISKELITVTVTIAVVTCEAHSFVHRSTHVESCLQQHVPPTTKRFPYPMSPSNLSTRSVVAPLRRLALDPLAATKRNYADRVLLSRTESHSTRSASG--------ISPERAGGSSRIVDDSEDEVAFEDEELGGVPGFDTTAAAGVGGGSTGKVATSAVVGSGVITTSSADANGAVAPCPWKGRELTIANGSTSVPKGSSSTGKRRDAVQ-RGQRGRGXXXXXXXXXXXXXSDREEMEVWDFERLGRTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNDDYATPTNAAAGTCPT---QFGTFCFITDTFIKAGAPEEVNI----RKLILELYQKGEESFEEVNEEERRMVFKRSYLAVKSMLEANLLRRFLNTDQFKSVRKQRENVQAMMDSPP 538
BLAST of mRNA_S-ischiensis_contig90.20861.1 vs. uniprot
Match: A0A6H5JE98_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE98_9PHAE) HSP 1 Score: 175 bits (444), Expect = 1.060e-42 Identity = 142/390 (36.41%), Postives = 200/390 (51.28%), Query Frame = 2
Query: 2 NVDDMFNISKELAINMVVFLVMAVSSRLVTLYGEEDMQQWMDP-------SHIFILGMSIVFWASVVEPMRRLAFDPLAATKRHYATRVLVTR-KGHGQADTTAG-RHHLPLHVVMGETAGSQVPHSYSSRHLVVLST-VCQAQRE-----YIYTRVLAHVLLPASLLDFVDGVASYSIWI-------SVGQTIEYRLSID-------IRSVLSINSFICVDIPSLCVLGSLRLWQ---VWDFERLASTPMLAAAFERFAQRALCQESVLFLAEVSRYVSGDFACVGHVAGTLSEEQWQFAAFCHVTQTFICNGAPEEVNISAQDKRRILECYNGGREAFLGLSDEERRLIFGRAYAEVKAMLEDNLLQRFMLTPEFEQVRAQRETVTVM 1075
NVDD+F+IS EL I V++ +V + EE QW P +++ ++ M I+F S++ P+RRLA DPLAAT+ +YA RVL R + H A +G L M + + L+T + +RE Y+ + S D VA ++ W SV T + +S D + V S I +D S Q +WDFER+ TP+LA AFE ++++ALC ES LFL+EVSRY +GD+A A + S QF FC++T TFI G+PEEVNIS ++++ IL Y+ G E F +++EERR+IF RAY VK MLE NLL RF+ T F+ V Q+E VM
Sbjct: 221 NVDDLFSISTELII---------VTATIVLITSEEVDGQWWGPYERRWFANNMSVVFMIILFGVSIIAPLRRLASDPLAATRHNYANRVLPNRTEPHSTARRASGFSSGLDCESSMMCSEREDETTLEEGKLGEALATGITTTEREGGSAGYVAASATIGKAVTTSSADANGAVAPHT-WTDREPTNSSVVTTATWFVSNDNGAGGNRLDGVRRGQSEIGLDRGRDGGRRSRSHKQDIDIWDFERIVRTPLLAVAFEDYSKKALCHESFLFLSEVSRYQNGDYAMATR-ASSGSSCPTQFGTFCYITDTFIKAGSPEEVNISDKERKLILALYHKGEELFEDVNEEERRMIFRRAYLAVKRMLEANLLLRFLNTDRFKSVEMQKEDTQVM 599
BLAST of mRNA_S-ischiensis_contig90.20861.1 vs. uniprot
Match: D7FTW0_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW0_ECTSI) HSP 1 Score: 173 bits (438), Expect = 1.280e-42 Identity = 128/363 (35.26%), Postives = 176/363 (48.48%), Query Frame = 2
Query: 2 NVDDMFNISKELAINMVVFLVMAVSSRLVTLYGEEDMQQWMDPSHIFILGMSIVFWASVVEPMRRLAFDPLAATKRHYATRVLVTRKGHGQADTTAGRHHLPLHVVMGETAGSQVPHSYSSRHLVVLSTVCQAQREYIYTRVLAHVLLPASLLDFVDGVASYSIWISVGQTIEYRLSIDIRSVLSINSFICVDIPSLCVLGSLRLWQVWDFERLASTPMLAAAFERFAQRALCQESVLFLAEVSRYVSGDFACVGHVAGTLSEEQWQFAAFCHVTQTFICNGAPEEVNISAQDKRRILECYNGGREAFLGLSDEERRLIFGRAYAEVKAMLEDNLLQRFMLTPEFEQVRAQRETVTVMAGMSP 1090
NVDD+F+IS EL I ++ + + L+G ++W+ +++ +L M ++F S+V P+RRLA DP AAT+R+YA RV LP H PHS L V + Q E R G S S ++ ID+ WDFER+ TP+LA AFE +++RALC ES LFL+EVSRY +GD+A A + S QF FC++T TFI G+PEEVNIS ++++ IL Y+ G E F ++D ERR+IF RAY VK MLE NLL RF+ T F+ + Q+E VM P
Sbjct: 221 NVDDLFSISTELIIVTATIGLITIVQEIDGLWGGCYERRWL-ANNLSVLFMIVLFGVSIVAPLRRLASDPFAATRRNYANRV------------------LPDHTE---------PHSIGGNRL---DAVRRGQSERGDDR------------GRDGGRRSRS----------HKQDIDL----------------------------WDFERIVRTPLLAVAFEDYSKRALCHESFLFLSEVSRYQNGDYATTIR-ASSGSSFPTQFGTFCYITDTFIKAGSPEEVNISDKERKLILALYHKGEELFEDVNDAERRMIFRRAYLAVKRMLEANLLLRFLNTDRFKSLEMQKENTQVMVDSPP 501
BLAST of mRNA_S-ischiensis_contig90.20861.1 vs. uniprot
Match: D7FTW1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW1_ECTSI) HSP 1 Score: 163 bits (413), Expect = 1.340e-39 Identity = 134/399 (33.58%), Postives = 194/399 (48.62%), Query Frame = 2
Query: 2 NVDDMFNISKELAINMVVFLVMAVSSRLVTLYGEEDMQQWMDPSHIFILGMSIVFWASVVEPMRRLAFDPLAATKRHYATRVLVTR-KGHGQADTTAGRHHLPLHVVMGETAGSQVPHSYSSRHLVVLSTVCQAQREYI-------------------YTRVLAHVLLPASLLDFVDGVASYSIWISVGQTIEYRLSIDIRSVLSINS-------FICVDIP---------SLCVLGSLRLWQVWDFERLASTPMLAAAFERFAQRALCQESVLFLAEVSRYVSGDFACVGHVAGTLSEEQWQFAAFCHVTQTFICNGAPEEVNISAQDKRRILECYNGGREAFLGLSDEERRLIFGRAYAEVKAMLEDNLLQRFMLTPEFEQVRAQRETVTVMAGMSP 1090
NVDD+F+ISKE+ I +++A+ +V +G ++W+D S + IL ++++F S+V+P+RRLAFDPLAAT+ ++A R+L++R + H R L V+G GSQ S + + + QRE + + + A D DG + W T ++ SV + NS F V S +VWDFER+ASTP+LAAAFE +++RALC ESVLFL+EVSRY + ++ A + S + QF +FC++T TFI G+ EEVNI R+IF RAY +VK MLE NL+ RF+ T F+ VR QRE + M G P
Sbjct: 109 NVDDLFSISKEIIIVTAAVVILAIEQNVVDKWGGVYERRWIDKS-VSILFVAVLFGVSIVDPLRRLAFDPLAATQHNHANRILLSRTEPHNSV-----RRELGFSSVIG--GGSQRTRGDSEEE----ARLEEGQREGVPGKDTTTAAGGDGDTGDVPTSAAIGRGATTAPTAD-ADGAVAPCTWNEREPTNSSVVAEGSSSVSNDNSTRGRRGAFQRVQRARGSGRDRGCSSRSRSDREEMEVWDFERIASTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNNNYPMPTR-ASSASSPRIQFGSFCYITDTFIKAGSSEEVNI---------------------------RMIFSRAYRDVKNMLEANLVLRFLNTDRFKNVRVQRENMKAMMGSPP 466
BLAST of mRNA_S-ischiensis_contig90.20861.1 vs. uniprot
Match: A0A6H5L7K1_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7K1_9PHAE) HSP 1 Score: 153 bits (387), Expect = 3.850e-36 Identity = 131/371 (35.31%), Postives = 181/371 (48.79%), Query Frame = 2
Query: 5 VDDMFNISKELAINMVVFLVMAVSSRLVTLYGEEDMQQWMDPSHIFILGMSIVFWASVVEPMRRLAFDPLAATKRHYATRVLVTRKGHGQADTTAGRHHLPLHVVMGETAGSQVPHSYSSRHL---VVLSTVCQAQREYIYTR--------VLAHVLLPASLLDFVDGVASYSIWISVG---------QTIEYRLSIDIRSVLSINSFICVDIPSLCVLGSLRLWQVWDFERLASTPMLAAAFERFAQRALCQESVLFLAEVSRYVSGDFACVGHVAGTLSEEQWQFAAFCHVTQTFICNGAPEEVNISAQDKRRILECYNGGREAFLGLSDEERRLIFGRAYAEVKAMLEDNLLQRFMLTPEFEQVRAQR 1057
VDD+FNIS+EL I ++FL++A+ + LY E DM W + F + + VF SVV P+R LA DPLA +K+ R ++ R+ D + + GS +SR L + V + + T A+ L A+ S S G Q I + S R + + + WDFERLA P++AAAFE + ++ALC E VLFL EVSRY SGDF AG Q+Q AFC + FI G+ EEV+IS +++R++E + G F ++EERRL+F RAY EVK MLEDNLL+RF+ T F+ VRAQR
Sbjct: 103 VDDLFNISRELIIVTILFLILAIGIKC-GLYYEVDM--WTGGNLNFFITAA-VFGVSVVGPLRLLAVDPLAGSKQRCMDRAVLARRDTRSEDVSYSAK------ATADIRGSSRAVRVASRKLEEGLYGDGVDENDDDGCDTTPXXXXXXXXXXXXXXXATSLYDEPPPANLSPSPSPGDPGAGNWQYQGINFCTS---RGGGAGXXXXXXXXXXXXXXXXEEMVEAWDFERLARKPLVAAAFEAYTRKALCHECVLFLREVSRYQSGDFP---EPAGLSGPSQYQ--AFCRINDVFIRPGSREEVSISGVERKRLMELAHKGDVLFEAGTEEERRLVFARAYLEVKTMLEDNLLRRFLQTDRFKSVRAQR 455
BLAST of mRNA_S-ischiensis_contig90.20861.1 vs. uniprot
Match: D7FTW2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW2_ECTSI) HSP 1 Score: 149 bits (375), Expect = 1.880e-35 Identity = 78/156 (50.00%), Postives = 103/156 (66.03%), Query Frame = 2
Query: 623 VWDFERLASTPMLAAAFERFAQRALCQESVLFLAEVSRYVSGDFACVGHVAGTLSEEQWQFAAFCHVTQTFICNGAPEEVNISAQDKRRILECYNGGREAFLGLSDEERRLIFGRAYAEVKAMLEDNLLQRFMLTPEFEQVRAQRETVTVMAGMSP 1090
+WDFER+ TP+LA AFE +++RALC ES LFL+EVSRY +GD+A A + S QF FC++T TFI G+ EEVNIS ++++ IL Y+ G E F ++ EERR+IF RAY VK MLE NLL RF+ T F+ + Q+E VM P
Sbjct: 208 LWDFERIVRTPLLAVAFEDYSKRALCHESFLFLSEVSRYQNGDYATTKR-ASSGSSFPTQFGTFCYITDTFIKAGSHEEVNISDKERKLILALYHKGEELFEDVNVEERRMIFRRAYLAVKRMLEANLLLRFLNTDRFKSLEMQKENTQVMVDSPP 362
BLAST of mRNA_S-ischiensis_contig90.20861.1 vs. uniprot
Match: D7FTV9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV9_ECTSI) HSP 1 Score: 128 bits (321), Expect = 6.720e-31 Identity = 72/157 (45.86%), Postives = 95/157 (60.51%), Query Frame = 2
Query: 620 QVWDFERLASTPMLAAAFERFAQRALCQESVLFLAEVSRYVSGDFACVGHVAGTLSEEQWQFAAFCHVTQTFICNGAPEEVNISAQDKRRILECYNGGREAFLGLSDEERRLIFGRAYAEVKAMLEDNLLQRFMLTPEFEQVRAQRETVTVMAGMSP 1090
+VWDFER+ASTP+LAAAFE +++RALC ESVLFL+EVSRY + ++ A + S + QF +FC++T TFI G+PEEVNI R+IF RA+ +VK MLE NL+ RF+ T F+ VR QRE + M G P
Sbjct: 2 EVWDFERIASTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNNNYPMPTR-ASSASSPRIQFGSFCYITDTFIKAGSPEEVNI---------------------------RMIFSRAHRDVKNMLEANLVLRFLNTDRFKNVRVQRENMKAMMGSPP 130 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig90.20861.1 >prot_S-ischiensis_contig90.20861.1 ID=prot_S-ischiensis_contig90.20861.1|Name=mRNA_S-ischiensis_contig90.20861.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=371bp MFNISKELAINMVVFLVMAVSSRLVTLYGEEDMQQWMDPSHIFILGMSIVback to top mRNA from alignment at S-ischiensis_contig90:211449..224465+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig90.20861.1 ID=mRNA_S-ischiensis_contig90.20861.1|Name=mRNA_S-ischiensis_contig90.20861.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=13017bp|location=Sequence derived from alignment at S-ischiensis_contig90:211449..224465+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig90:211449..224465+ >mRNA_S-ischiensis_contig90.20861.1 ID=mRNA_S-ischiensis_contig90.20861.1|Name=mRNA_S-ischiensis_contig90.20861.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2226bp|location=Sequence derived from alignment at S-ischiensis_contig90:211449..224465+ (Schizocladia ischiensis KU_0333)back to top |