mRNA_S-ischiensis_contig90.20849.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20849.1
Unique NamemRNA_S-ischiensis_contig90.20849.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:95679..100109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1300
Cds size1299
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20849.1prot_S-ischiensis_contig90.20849.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 95679..100109 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.1309037-CDS-S-ischiensis_contig90:95678..957981622817407.1309037-CDS-S-ischiensis_contig90:95678..95798Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 95679..95798 -
1695741091.6315856-CDS-S-ischiensis_contig90:95678..957981695741091.6315856-CDS-S-ischiensis_contig90:95678..95798Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 95679..95798 -
1622817407.1426532-CDS-S-ischiensis_contig90:96290..964131622817407.1426532-CDS-S-ischiensis_contig90:96290..96413Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 96291..96413 -
1695741091.6432078-CDS-S-ischiensis_contig90:96290..964131695741091.6432078-CDS-S-ischiensis_contig90:96290..96413Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 96291..96413 -
1622817407.1539476-CDS-S-ischiensis_contig90:96595..967121622817407.1539476-CDS-S-ischiensis_contig90:96595..96712Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 96596..96712 -
1695741091.6548712-CDS-S-ischiensis_contig90:96595..967121695741091.6548712-CDS-S-ischiensis_contig90:96595..96712Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 96596..96712 -
1622817407.165702-CDS-S-ischiensis_contig90:97077..972091622817407.165702-CDS-S-ischiensis_contig90:97077..97209Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 97078..97209 -
1695741091.6655345-CDS-S-ischiensis_contig90:97077..972091695741091.6655345-CDS-S-ischiensis_contig90:97077..97209Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 97078..97209 -
1622817407.181382-CDS-S-ischiensis_contig90:99302..1001091622817407.181382-CDS-S-ischiensis_contig90:99302..100109Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 99303..100109 -
1695741091.6809487-CDS-S-ischiensis_contig90:99302..1001091695741091.6809487-CDS-S-ischiensis_contig90:99302..100109Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 99303..100109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20849.1

>prot_S-ischiensis_contig90.20849.1 ID=prot_S-ischiensis_contig90.20849.1|Name=mRNA_S-ischiensis_contig90.20849.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=433bp
GNGQVGGVGAPAPTPAPSPLQMMGGANLEQFLEFVARSGAQMDVFDPVKR
EQLLASFRATQPAPAPSPGLPQPQPQPQPQPQPPRATLPLPPPPTSSFAG
MGASLGGHHPAALGMARHIGGGISVAGVAAGLGDPVECQHGGCQLPAIYG
AEDDASPTFCATHKTDMQVDLRLGKCMYEGCKRKKSYNFRGRLPLLCTKH
KSEGMVNVILRQCEEPSCYKTPCYGIEGERPQRCARHKLPGMVNVSSKRC
GGLNCTRLALFNFPGHKSKVFCSEHKVEGMLNLSSKRCKAEGCLRWPYYE
FPGRKATWCSNHKADGMLDVKNRRCEYVRCNRFAIYGFDGDYPRYCTTHK
TQGMVCSINKKCQEEGCNRPPHYAHRGDKAKYCADHALQGMVQVRGHQRR
VVPPPQYAGGELRHPMGVPVAAAPPVAPPGQAH
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mRNA from alignment at S-ischiensis_contig90:95679..100109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20849.1 ID=mRNA_S-ischiensis_contig90.20849.1|Name=mRNA_S-ischiensis_contig90.20849.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4431bp|location=Sequence derived from alignment at S-ischiensis_contig90:95679..100109- (Schizocladia ischiensis KU_0333)
GGAAACGGGCAGGTTGGGGGCGTGGGCGCGCCCGCGCCTACACCCGCGCC
CTCGCCGTTGCAGATGATGGGGGGGGCAAACCTCGAACAATTTTTGGAGT
TCGTGGCGCGCTCGGGCGCCCAAATGGACGTCTTTGACCCCGTGAAGAGG
GAGCAGCTCCTGGCCAGCTTCAGGGCAACGCAGCCCGCGCCCGCGCCTTC
CCCGGGCCTTCCCCAACCCCAACCCCAACCCCAACCCCAACCGCAACCGC
CGCGGGCGACGCTCCCGCTGCCGCCACCGCCCACTTCTTCCTTTGCTGGC
ATGGGGGCTTCACTCGGGGGCCATCACCCCGCTGCCCTGGGTATGGCTCG
TCATATCGGCGGCGGAATATCCGTGGCCGGCGTCGCCGCGGGGCTGGGCG
ACCCTGTCGAGTGCCAGCACGGCGGGTGCCAGCTGCCCGCAATCTACGGC
GCGGAGGACGACGCGTCCCCGACGTTCTGCGCCACGCACAAGACAGACAT
GCAGGTGGACCTGCGGTTGGGGAAGTGCATGTACGAGGGGTGCAAGCGCA
AGAAGAGTTACAACTTCCGCGGACGCCTGCCATTGCTGTGCACCAAGCAC
AAGTCGGAGGGCATGGTGAACGTCATCCTGCGGCAGTGTGAGGAGCCCTC
CTGCTACAAGACGCCGTGCTACGGGATCGAGGGCGAGCGCCCCCAGCGGT
GCGCCCGGCACAAGCTGCCGGGCATGGTCAACGTGTCCAGCAAGCGCTGT
GGCGGCCTGAACTGCACCCGCCTCGCCCTCTTCAACTTCCCGGGGCACAA
GAGCAAGGTGAGGAACAGGGATGGCACTTAGAGGTTAAAGATATGATTCA
TAATTAGCCTTCATCTTAGGTCTAATTGCCCCTAAATAAGGACCTAAAAG
GGCACCACCTAGGGGTTAAGTGCCAGCGCTGGTGAGGAATGGTTGGAACC
CTGAGCTTGATTGGGACGTCGAACGATCGAGCGAGATTGCGTTGTGTTTT
TCTTGAGGCACGTTTACTCCGCGATGGGGCAGCTAGCTCTCGGGCACCTC
TCTTTAACTTGACGCGCCCAATTCCATCCTTGCCCCGCACAGCCTACTAC
TTCTACTTCGAAGTATGTACTCATACTTGTACTCGACTAGCCCTAACCCT
AACCCCAAGTACTCAGGCGTTGACCCCGCACAGCCTGCCGCACTTTGAAA
TAAGAGGCGGCGAGCCATGTATCACTCACAGTAGCCAAAAGCCTGCCGCG
TGCACCTAACCTAGCCCCAACCCTAGCCCTACCCCCGAGCACGAAGTACT
CAGGCGTCGACCCCGCACAGCCTGCTGCACTTTGGAACAAGAGGCGGCGA
GCCATATGTAACGCTCACAGTAGCCACAAGTCTGCCGCGTGCACCTAATC
TAACCCTAGCCCTAACCCTGACCCTAAATACTCACTCAGGCGTTGACCCT
GCACAGCTTGCTGCATTTTGAAATACGAGGCGGCGAGCCATGATGTACTT
CGAAGTAACGCTCACAGTACCCAAAAGCCTGCCACGTGCAGAGTAGGCCA
CAACTGCATTGCATGCCCCTGGCCCTCAAGCACCAGCGCGCACGCCTTCT
CAACCAACCAAGTGTTTAGGGTTAGGTTAGGTCAGAGTACCCAAAAGTCA
GTCGCGTGTAGAGTAGGCCACAATTGCATCATGCCCTTGGCCCTCAAGCA
CCAGCGCGCGCCAGTGATGGAATATCCATCAGATATGCAGGAGTTAGGCT
ATCGGGCTCGACTGATTTTGTGGGTGGCGGTACTAGCTACTTGGATTTAG
TGTGGGTCAAACTATCGAATATCGACTATCGATATATACTTCCTCCGGAC
CGCTTTATTATACACAGTTTTTTTAGAGGGTGGTGAACGTTGCTGTGACG
GTCTTCCACAAACGAACGATACACCATCGTGACGGCAGTCTCTTGAAGTT
CCAAACCCAAAATATATGCGCGAAATTGGCCCAGTAGTTCTCGAGATACG
GACGTTTGATTCGGCGAATTGTGTTCACTCCCCAAAAACATGCGCTAGAA
TGACCCGATTTTGTGCATGAATCGCAGGTGCCAACTTCAGAGAGCGATAA
CTCGAGCTCTAGCCCTCCGATCGGGCCGCAACTTTCACCGTTGCGTTCAC
CACCACAACTTCCGTTTCGAAGGAAAAAAAATCCGCCCGTAGCATACGTA
CCTACGTACGTACGTACACACGTACGATACGGTGAAATCGGGTAAAATCG
GTTTGATGCTCATAACATCGGAACCAAAATTCCGATTTCGATGAAAATTT
GTCAGGATGTTGTTCTCGATGAGAGCAATCGATCGTGCCTGACTCTGCTT
GCTAATTCAACCCGTAGCTTGAGAACAGCGCGCGCGTCCGATTGGCCCCT
GGACGGCCCGATACGGCCCAGGAAAGATACGATACGTGACACGATACGTT
CGTCCGTTGGTGCCCAAATTTGGCGGACGGACAGATGCGTTGATTGACCC
CCTGAACCGCGCAAAAATCTGCCTCTCACAGCCCACAAACGAGCGTCGCA
ACTGCAGTGGCGGCGCTGTCAAGCATGTCGCGCCCCCACCCTGGAGGTTC
AACGTTGGGGTTCAGTCACTGGCCTATAACTCCAGAACCACTTGAGCGTT
TCAGCTGAAATTTTAAAGGTGGTAAGGGGTGGGCATGACATATGCAACTG
CCAACGGCATGCATTGGCAGGCAGTGTATGCAGCGTGCAGGGCCACCAAA
CGAACTGTGTATATTAATGTGGTCCGGAGGAAGTATATATGTATATTCGA
AGTACTCGAGTATGTATAGACCAGTACCGTACTGTTAGTAAATGGGCTGA
TTTGCTGAGATATTGCGTCTCTGGCGCGCACGCCTTCTCCAACCAAGCAG
GTGTTCTGCAGCGAGCACAAGGTGGAAGGCATGCTCAACCTGTCTAGCAA
GCGCTGCAAGGCGGAGGGGTGCCTGCGCTGGCCCTACTACGAGTTCCCGG
GGCGCAAGGCCACCTGGTGCTCCAACCACAAGGTACTTAGAGTTCAGCAT
TGATAAAAATATTGGTCGTTTATATTGAATAAATACGAAGTATTCATAAG
TACTCACGTGGAGCTTGCTGTAGTCCCGGGACCGTTGACCACGCGCCTCG
GTCGAGACGGAGCAGGAATACATATTGCATATTGGTCAATATTGTTTTTA
TTGGATATTGATTGAACATGGCTGGAGAGTATCGAGTATTGATAGATACG
GACGATTTTCGGCGTCAAGGTGAACTCTGCTGTACCACCACAAAGGCCGA
TGGCATGCTGGACGTGAAGAACCGCCGCTGCGAGTACGTCTCCTGCAACC
TCTGTTGATCAACATTGATGTATTTCTATTGGATATTGATTGAGCAGGCC
GACGGCATGCTGGACGTGAAGAACCGGCGCTGCGAGTACGTCCGCTGCAA
CCGCTTCGCCATCTACGGCTTCGACGGCGACTACCCGCGCTACTGCACCA
CCCACAAGACCCAGGTAACCATGCCACAAAAGTGATTTTTTTTTGCCCAA
ACATTTCTTTGCGATATGGACAATTTTCGCATCAAGGCCCGAACACTTGC
CCAAATATCGATATTTTCCCAACAATATCGATTTGCGACTTGTAGCCCCA
AATTGACATTTTTTTAACGTCGCACGTTTGTGCCATGGTTGCGCAGGGCA
TGGTGTGCTCCATCAACAAGAAGTGCCAGGAGGAGGGCTGCAACCGGCCC
CCGCACTATGCGCACCGCGGCGACAAGGCCAAGTATTGTGCCGACCACGC
CCTCCAAGGAATGGTTCAGGTACGTGGTGGTCTCTCTTCTTATTCTTCTC
TTGTCCGTCTTCCCCCCCCCCCCCCCCGTTTTTCTTCCCCCCCTCATTGT
TCTTTCTTCCTTAATGTGACATTCACTAGTATAGCAACACTCGTGGAGTC
CTGTTTTGGGACTTGGCTTTTGGCACGGGGCCTGGAACTCGCCGCTTATC
TACCACTCAAATACGAACACTCAATCCTTAAATGGGACACAACCATGTAC
TCGAGTACTAATACGAGAACCCTCAAATCTCACACACGTGCAATCGTACC
CCGCTACAATTTACATGAATCACAGGGACGCGGCCACCAGAGGCGCGTCG
TCCCCCCGCCGCAATACGCGGGGGGGGGACTGTGCCACCCCATGGGAGTC
CCCGTCGCCGCCGCCCCCGGTCCCCCTCCCCCCGCCGGAGTCCCCCCCAG
CTATCCACAGCCAACCTACCCCTAACCCTAACCCTAACCTAAACCCTAAA
CCCTAACACAGGTGCGCGGCCACCAGAGGCGTGTCGTCCCCCCTCCGCAA
TACGCGGGCGGGGAGCTCCGCCACCCCATGGGCGTCCCCGTCGCCGCCGC
CCCCCCCGTCGCCCCCCCGGGGCAAGCCCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig90:95679..100109-

>mRNA_S-ischiensis_contig90.20849.1 ID=mRNA_S-ischiensis_contig90.20849.1|Name=mRNA_S-ischiensis_contig90.20849.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2598bp|location=Sequence derived from alignment at S-ischiensis_contig90:95679..100109- (Schizocladia ischiensis KU_0333)
GGAAACGGGCAGGTTGGGGGCGTGGGCGCGCCCGCGCCTACACCCGCGCC
CTCGCCGTTGCAGATGATGGGGGGGGCAAACCTCGAACAATTTTTGGAGT
TCGTGGCGCGCTCGGGCGCCCAAATGGACGTCTTTGACCCCGTGAAGAGG
GAGCAGCTCCTGGCCAGCTTCAGGGCAACGCAGCCCGCGCCCGCGCCTTC
CCCGGGCCTTCCCCAACCCCAACCCCAACCCCAACCCCAACCGCAACCGC
CGCGGGCGACGCTCCCGCTGCCGCCACCGCCCACTTCTTCCTTTGCTGGC
ATGGGGGCTTCACTCGGGGGCCATCACCCCGCTGCCCTGGGTATGGCTCG
TCATATCGGCGGCGGAATATCCGTGGCCGGCGTCGCCGCGGGGCTGGGCG
ACCCTGTCGAGTGCCAGCACGGCGGGTGCCAGCTGCCCGCAATCTACGGC
GCGGAGGACGACGCGTCCCCGACGTTCTGCGCCACGCACAAGACAGACAT
GCAGGTGGACCTGCGGTTGGGGAAGTGCATGTACGAGGGGTGCAAGCGCA
AGAAGAGTTACAACTTCCGCGGACGCCTGCCATTGCTGTGCACCAAGCAC
AAGTCGGAGGGCATGGTGAACGTCATCCTGCGGCAGTGTGAGGAGCCCTC
CTGCTACAAGACGCCGTGCTACGGGATCGAGGGCGAGCGCCCCCAGCGGT
GCGCCCGGCACAAGCTGCCGGGCATGGTCAACGTGTCCAGCAAGCGCTGT
GGCGGCCTGAACTGCACCCGCCTCGCCCTCTTCAACTTCCCGGGGCACAA
GAGCAAGGGAAACGGGCAGGTTGGGGGCGTGGGCGCGCCCGCGCCTACAC
CCGCGCCCTCGCCGTTGCAGATGATGGGGGGGGCAAACCTCGAACAATTT
TTGGAGTTCGTGGCGCGCTCGGGCGCCCAAATGGACGTCTTTGACCCCGT
GAAGAGGGAGCAGCTCCTGGCCAGCTTCAGGGCAACGCAGCCCGCGCCCG
CGCCTTCCCCGGGCCTTCCCCAACCCCAACCCCAACCCCAACCCCAACCG
CAACCGCCGCGGGCGACGCTCCCGCTGCCGCCACCGCCCACTTCTTCCTT
TGCTGGCATGGGGGCTTCACTCGGGGGCCATCACCCCGCTGCCCTGGGTA
TGGCTCGTCATATCGGCGGCGGAATATCCGTGGCCGGCGTCGCCGCGGGG
CTGGGCGACCCTGTCGAGTGCCAGCACGGCGGGTGCCAGCTGCCCGCAAT
CTACGGCGCGGAGGACGACGCGTCCCCGACGTTCTGCGCCACGCACAAGA
CAGACATGCAGGTGGACCTGCGGTTGGGGAAGTGCATGTACGAGGGGTGC
AAGCGCAAGAAGAGTTACAACTTCCGCGGACGCCTGCCATTGCTGTGCAC
CAAGCACAAGTCGGAGGGCATGGTGAACGTCATCCTGCGGCAGTGTGAGG
AGCCCTCCTGCTACAAGACGCCGTGCTACGGGATCGAGGGCGAGCGCCCC
CAGCGGTGCGCCCGGCACAAGCTGCCGGGCATGGTCAACGTGTCCAGCAA
GCGCTGTGGCGGCCTGAACTGCACCCGCCTCGCCCTCTTCAACTTCCCGG
GGCACAAGAGCAAGGTGTTCTGCAGCGAGCACAAGGTGGAAGGCATGCTC
AACCTGTCTAGCAAGCGCTGCAAGGCGGAGGGGTGCCTGCGCTGGCCCTA
CTACGAGTTCCCGGGGCGCAAGGCCACCTGGTGCTCCAACCACAAGGTGT
TCTGCAGCGAGCACAAGGTGGAAGGCATGCTCAACCTGTCTAGCAAGCGC
TGCAAGGCGGAGGGGTGCCTGCGCTGGCCCTACTACGAGTTCCCGGGGCG
CAAGGCCACCTGGTGCTCCAACCACAAGGCCGACGGCATGCTGGACGTGA
AGAACCGGCGCTGCGAGTACGTCCGCTGCAACCGCTTCGCCATCTACGGC
TTCGACGGCGACTACCCGCGCTACTGCACCACCCACAAGACCCAGGCCGA
CGGCATGCTGGACGTGAAGAACCGGCGCTGCGAGTACGTCCGCTGCAACC
GCTTCGCCATCTACGGCTTCGACGGCGACTACCCGCGCTACTGCACCACC
CACAAGACCCAGGGCATGGTGTGCTCCATCAACAAGAAGTGCCAGGAGGA
GGGCTGCAACCGGCCCCCGCACTATGCGCACCGCGGCGACAAGGCCAAGT
ATTGTGCCGACCACGCCCTCCAAGGAATGGTTCAGGGCATGGTGTGCTCC
ATCAACAAGAAGTGCCAGGAGGAGGGCTGCAACCGGCCCCCGCACTATGC
GCACCGCGGCGACAAGGCCAAGTATTGTGCCGACCACGCCCTCCAAGGAA
TGGTTCAGGTGCGCGGCCACCAGAGGCGTGTCGTCCCCCCTCCGCAATAC
GCGGGCGGGGAGCTCCGCCACCCCATGGGCGTCCCCGTCGCCGCCGCCCC
CCCCGTCGCCCCCCCGGGGCAAGCCCACGTGCGCGGCCACCAGAGGCGTG
TCGTCCCCCCTCCGCAATACGCGGGCGGGGAGCTCCGCCACCCCATGGGC
GTCCCCGTCGCCGCCGCCCCCCCCGTCGCCCCCCCGGGGCAAGCCCAC
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