mRNA_S-ischiensis_contig9.20829.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20829.1
Unique NamemRNA_S-ischiensis_contig9.20829.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3587379..3588443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_003820.1
Exons2
Model size783
Cds size627
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20829.1prot_S-ischiensis_contig9.20829.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3587390..3588298 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.164402-UTR-S-ischiensis_contig9:3587378..35873891622817370.164402-UTR-S-ischiensis_contig9:3587378..3587389Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3587379..3587389 +
1695741062.7093685-UTR-S-ischiensis_contig9:3587378..35873891695741062.7093685-UTR-S-ischiensis_contig9:3587378..3587389Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3587379..3587389 +
1622817370.1994011-UTR-S-ischiensis_contig9:3588298..35884431622817370.1994011-UTR-S-ischiensis_contig9:3588298..3588443Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3588299..3588443 +
1695741062.751071-UTR-S-ischiensis_contig9:3588298..35884431695741062.751071-UTR-S-ischiensis_contig9:3588298..3588443Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3588299..3588443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.1780977-CDS-S-ischiensis_contig9:3587389..35877391622817370.1780977-CDS-S-ischiensis_contig9:3587389..3587739Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3587390..3587739 +
1695741062.726967-CDS-S-ischiensis_contig9:3587389..35877391695741062.726967-CDS-S-ischiensis_contig9:3587389..3587739Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3587390..3587739 +
1622817370.1884346-CDS-S-ischiensis_contig9:3588021..35882981622817370.1884346-CDS-S-ischiensis_contig9:3588021..3588298Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3588022..3588298 +
1695741062.7391546-CDS-S-ischiensis_contig9:3588021..35882981695741062.7391546-CDS-S-ischiensis_contig9:3588021..3588298Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3588022..3588298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20829.1

>prot_S-ischiensis_contig9.20829.1 ID=prot_S-ischiensis_contig9.20829.1|Name=mRNA_S-ischiensis_contig9.20829.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=209bp
MMICYIVSLAVLVSRVECLLTAPASLRVVGVRRHGLSHQGAGVNLDDSDD
MSDFDMLRRLNRQNGRDMEGEDDIPFFSSPKSSRSLNREAGRDMEGDEGI
PFFSTPKTPRSVVERSGSPGTQEAATQTIQSILTISIGAGLLTVLVWAFA
KDAFVHLGPRPPGVSRSSIVDGSAAPRQRGQAGAQDRRPFVFEGFPEPKP
LGSTGRTD*
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mRNA from alignment at S-ischiensis_contig9:3587379..3588443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20829.1 ID=mRNA_S-ischiensis_contig9.20829.1|Name=mRNA_S-ischiensis_contig9.20829.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1065bp|location=Sequence derived from alignment at S-ischiensis_contig9:3587379..3588443+ (Schizocladia ischiensis KU_0333)
CTGGGGCACACATGATGATTTGCTACATCGTTTCGCTTGCCGTGTTGGTC
TCTCGAGTTGAATGTCTCCTGACGGCACCCGCCTCCCTTCGAGTTGTCGG
GGTGCGACGGCACGGGCTGTCGCATCAAGGTGCTGGAGTAAACCTCGACG
ATTCCGACGACATGAGTGATTTCGACATGCTCCGGAGACTCAACAGGCAA
AATGGCAGAGACATGGAAGGAGAGGATGATATTCCATTCTTCTCCTCTCC
CAAATCTTCCAGGAGCCTCAACAGGGAAGCTGGCAGAGATATGGAAGGAG
ATGAAGGCATTCCCTTCTTCTCTACTCCCAAAACCCCCCGGAGTGTGGTT
GAACGCAGCGGGTGAGTGGCCGCAAAGGCATTTTACATTGCGGGTTGCCC
CCATATCACCCGTGCGGGAGGGGCTTGCACACGGGACACTCCTCACAGTA
CCACATATACTAAACATGCTCTCGCTTCAATGCGTTGCCAGTTTGGCGTA
GAATCAGCCGTACTCGAGTGCCCCTTTCTGCGGTGTCCTTGCTGTTGAGA
CAGACAAATACTTCGAGGTATGCACGATGTCGCTGAAATCGCTGACTGTA
CGTCCGCGGCCCTGCTTTGTACGCTCATATCGCTGGCCGGCAGGAGTCCT
GGCACTCAAGAGGCAGCAACACAAACCATCCAGAGTATCCTCACGATATC
AATCGGCGCAGGCCTGTTGACAGTTTTGGTGTGGGCTTTTGCAAAGGATG
CGTTTGTCCACCTGGGACCGCGGCCACCTGGGGTATCACGGTCATCGATT
GTGGACGGAAGTGCTGCTCCTCGGCAGCGTGGCCAAGCGGGCGCTCAAGA
TCGACGACCATTTGTTTTCGAGGGCTTCCCTGAGCCGAAGCCTTTGGGGT
CAACAGGACGGACTGATTGATGACGCGTTTACTCGGCAAATGCGTGCAGG
AGAAATCTTTTGGGCTACTTAGCCAGGCATACTGCTGTACAGCGGAGTGC
TGCTGCTGTAGTTGGTGCAAGCCACTTTGACAAGCCACTCGAATTTAATG
GCATATGGACTTAAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3587379..3588443+

>mRNA_S-ischiensis_contig9.20829.1 ID=mRNA_S-ischiensis_contig9.20829.1|Name=mRNA_S-ischiensis_contig9.20829.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1254bp|location=Sequence derived from alignment at S-ischiensis_contig9:3587379..3588443+ (Schizocladia ischiensis KU_0333)
ATGATGATTTGCTACATCGTTTCGCTTGCCGTGTTGGTCTCTCGAGTTGA
ATGTCTCCTGACGGCACCCGCCTCCCTTCGAGTTGTCGGGGTGCGACGGC
ACGGGCTGTCGCATCAAGGTGCTGGAGTAAACCTCGACGATTCCGACGAC
ATGAGTGATTTCGACATGCTCCGGAGACTCAACAGGCAAAATGGCAGAGA
CATGGAAGGAGAGGATGATATTCCATTCTTCTCCTCTCCCAAATCTTCCA
GGAGCCTCAACAGGGAAGCTGGCAGAGATATGGAAGGAGATGAAGGCATT
CCCTTCTTCTCTACTCCCAAAACCCCCCGGAGTGTGGTTGAACGCAGCGG
ATGATGATTTGCTACATCGTTTCGCTTGCCGTGTTGGTCTCTCGAGTTGA
ATGTCTCCTGACGGCACCCGCCTCCCTTCGAGTTGTCGGGGTGCGACGGC
ACGGGCTGTCGCATCAAGGTGCTGGAGTAAACCTCGACGATTCCGACGAC
ATGAGTGATTTCGACATGCTCCGGAGACTCAACAGGCAAAATGGCAGAGA
CATGGAAGGAGAGGATGATATTCCATTCTTCTCCTCTCCCAAATCTTCCA
GGAGCCTCAACAGGGAAGCTGGCAGAGATATGGAAGGAGATGAAGGCATT
CCCTTCTTCTCTACTCCCAAAACCCCCCGGAGTGTGGTTGAACGCAGCGG
GAGTCCTGGCACTCAAGAGGCAGCAACACAAACCATCCAGAGTATCCTCA
CGATATCAATCGGCGCAGGCCTGTTGACAGTTTTGGTGTGGGCTTTTGCA
AAGGATGCGTTTGTCCACCTGGGACCGCGGCCACCTGGGGTATCACGGTC
ATCGATTGTGGACGGAAGTGCTGCTCCTCGGCAGCGTGGCCAAGCGGGCG
CTCAAGATCGACGACCATTTGTTTTCGAGGGCTTCCCTGAGCCGAAGCCT
TTGGGGTCAACAGGACGGACTGATTGAGAGTCCTGGCACTCAAGAGGCAG
CAACACAAACCATCCAGAGTATCCTCACGATATCAATCGGCGCAGGCCTG
TTGACAGTTTTGGTGTGGGCTTTTGCAAAGGATGCGTTTGTCCACCTGGG
ACCGCGGCCACCTGGGGTATCACGGTCATCGATTGTGGACGGAAGTGCTG
CTCCTCGGCAGCGTGGCCAAGCGGGCGCTCAAGATCGACGACCATTTGTT
TTCGAGGGCTTCCCTGAGCCGAAGCCTTTGGGGTCAACAGGACGGACTGA
TTGA
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