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Homology
BLAST of mRNA_S-ischiensis_contig9.20820.1 vs. uniprot
Match: D7FQY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY2_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 3.070e-18 Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 1
Query: 1 MWDCTFWVERRRRESRGRHAKRALPVGGEKGQATGPALGPGSGVWRAGENTLERIEALEASAVLEVLWGRRHIKHHEAVPVMAAESGGAVELIEVARPHGVAPGLCSYLGPTL 339
MWDC FWV+RRR E++G A AL E + WRAG T+ RIEALE SA+LEV G R+ ++++ +P +++ AVELIE P GV PG+C YLGP++
Sbjct: 157 MWDCPFWVDRRRAEAKGSSAHVALRTPEESSREA---------CWRAGPQTVRRIEALEPSALLEVHVGPRNTRYYKEIP---SQTEDAVELIETLTPLGVKPGVCRYLGPSV 257
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1063 |
| Cds size | 360 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817404.3092856-CDS-S-ischiensis_contig9:3517776..3517839 | 1622817404.3092856-CDS-S-ischiensis_contig9:3517776..3517839 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3517777..3517839 + |
| 1695741089.332652-CDS-S-ischiensis_contig9:3517776..3517839 | 1695741089.332652-CDS-S-ischiensis_contig9:3517776..3517839 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3517777..3517839 + |
| 1622817404.3225074-CDS-S-ischiensis_contig9:3518624..3518795 | 1622817404.3225074-CDS-S-ischiensis_contig9:3518624..3518795 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3518625..3518795 + |
| 1695741089.3442526-CDS-S-ischiensis_contig9:3518624..3518795 | 1695741089.3442526-CDS-S-ischiensis_contig9:3518624..3518795 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3518625..3518795 + |
| 1622817404.3361344-CDS-S-ischiensis_contig9:3520000..3520126 | 1622817404.3361344-CDS-S-ischiensis_contig9:3520000..3520126 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3520001..3520126 + |
| 1695741089.361036-CDS-S-ischiensis_contig9:3520000..3520126 | 1695741089.361036-CDS-S-ischiensis_contig9:3520000..3520126 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3520001..3520126 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817404.3465917-UTR-S-ischiensis_contig9:3520126..3520829 | 1622817404.3465917-UTR-S-ischiensis_contig9:3520126..3520829 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 3520127..3520829 + |
| 1695741089.376823-UTR-S-ischiensis_contig9:3520126..3520829 | 1695741089.376823-UTR-S-ischiensis_contig9:3520126..3520829 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 3520127..3520829 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20820.1 >prot_S-ischiensis_contig9.20820.1 ID=prot_S-ischiensis_contig9.20820.1|Name=mRNA_S-ischiensis_contig9.20820.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=120bp
MWDCTFWVERRRRESRGRHAKRALPVGGEKGQATGPALGPGSGVWRAGEN
TLERIEALEASAVLEVLWGRRHIKHHEAVPVMAAESGGAVELIEVARPHG
VAPGLCSYLGPTLVTASEQ* back to topmRNA from alignment at S-ischiensis_contig9:3517777..3520829+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig9.20820.1 ID=mRNA_S-ischiensis_contig9.20820.1|Name=mRNA_S-ischiensis_contig9.20820.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3053bp|location=Sequence derived from alignment at S-ischiensis_contig9:3517777..3520829+ (Schizocladia ischiensis KU_0333)
ATGTGGGACTGCACGTTCTGGGTGGAGCGTCGGAGGCGGGAGAGCAGAGG
GAGGCACGCAAAGGTGACTGGATTGTTGCTTGCTGATTTCTGGCCAGGGG
GGCTGTTGTTGTCTGCTTCGAAGTACTTCCGGAAGTACTTGTACGTACTG
TGCATAGAGACTGCCCGTTCTGGGTGGGACGTCGGAGGCAGGAGAGCAGA
GGCAGGCACGCAAAGGTGACTCACATGTAAAGAATGTTCGGCGTGAACTG
GTCTGAGCGTGCATGGATCCCACCCAGGCGACGCGCATGGCCAGTTGATC
GACCGCTTGCCCGGGCTTTGTTGTTCGGTTTTGTCTTGCCGTCTCTCATA
TCGCTTCGCACCCACTTAGCCCAAGCATAGCCCATCATAGAAACACGCTG
GTATCACGACTACTGTGAGAACTGCTTTGCTTATCTGTGCACAGGGAGAA
CGGCAGAGTACTGAGCACAGTACAGCCCCCGCGTGGCCAAGGAGGTGAGA
ATGATCGACCACTTGCCCCGGCTTTGTTCGGTTTGGTCCAGTGGTGGAAT
ATCTAGGCAGATCAACCCATTTATCGACAGTACTGATCTAGTTTGGGCGG
TAGAGAAGCAGCGAGTTCCAGGCCCCGTGCCAAAAGGCACGTCCCAAAAA
GGGACTCAACGAAGCCCTTCTTCCCCTCTCAGGGCAAAAAGAAAAGAAAA
TATCTATCTATCGATATTCGATATTCGATTGTTTGACCCACACTAAATCC
AAGTAGTTGGCAACGCCCCCACAAAATCATCCGAGCCCGATAACTATCCA
CTGATTGATATCCCACCACTGGTTTTGTATTGCCGTCTCTCTCCGCAGCG
GGCCTTGCCAGTGGGTGGTGAGAAGGGACAAGCCACGGGCCCAGCGCTGG
GCCCCGGGAGCGGCGTGTGGCGGGCCGGAGAGAACACCTTGGAGAGGATT
GAGGCGCTGGAGGCTTCGGCCGTGTTGGAGGTGCTTTGGGGGCGGAGACA
CATCAAGCACCACGAAGCGGTGAGTGCGAGAGTCGAGGGGTGATTCACAT
TAATTGTAACGAGGTACAATCGCACGTGTGTGAGATTGACTGTTCTCGTA
CTGCGTAATATTAGTAGTTGTCCCATTTAAGAATTGAGGGGTGTTGGTCC
AGCTGCTGGCAGTTTGTGCCTGGCCTTGCCCTTGCGGTCATGTCAAGCAT
GTATTCGAGTACTGTTGATTCATACTTCTTATTAATTGTACTTCGGGGTA
GCAAGGTACAATCGCACGTGTGTGAGATTGACTGTTCTCGTATTAGTAGT
TGTCCCATTTAAGAATTGAGTGGTGTTGGTCCAGCTGCTGGCGGTTTCCT
TGTGCCTGGCCTTGCCCAACCTTGCGGTCGTGTCAGCATGTACTTCGTAC
ACGAGCAGTGTTGATTCATATTAATTGTGACAAGGAAGTACAATCGCACG
TGTGTGAGATTGAGCGTCCTCGTGTTAGCGGTTGTCACATTAAATGATAA
GAACAAAGGGGGGGGGAGGGGAGGGGGTACGCACACTGTGCTTGCCGTAG
TCCCGGGGCCATTGAGCCCACGCCTCGATCGAGGCGGTTGCGTCAAGGTA
TACCATGTGTACTCACGTTGTGCTTGCCATAGTCCAGAGACCGTTGACGA
CGAGGCGCCACCGTCGAGGGCGGAGCAAGGTAGTCGTTCAAATACACGCT
TGCGAGGTACGTTCTCACGAGTGTGAAAAAATGGGGTGTGCTTGCTGAAA
TCGAGTGGATAAATCAGGACTCGAGGATCTACTAGAGTGACAATAGTGAG
TTGATTTTGGATGCATTAAAATTACGGAAAAAAAATGGTACTCGTGCACT
CATGGCGTGCGTGAGGGGGGGGGATGGGAGGGGACACTTGCCGTGCAATA
TCTGTACGTACCGTAATCGGCGGAGAGATCTTGCCCCCCCATGCCAATCT
TCGGGAGAACTTTTCTCGCCGAATACTGGTCGGATTCGCGCGGGAAAACT
CGGGAAATCTCCCTCAGGACCTGGGGGAACTTTTGGGAGAGTTTTTGGGA
CAATGCGGGACGTTCCCGGCTAGAAATATTCCCCCGAAAATTGTCCCATG
GGGGCAATATCTCTTCGCCGATTACGGTACTGCACATGCCGGGCTCTGAG
CCAAGCAACGCTGGTGCGTCACTCTTCGCTCCCCTGGGCCCTTCCTTTGC
ACACTCGCCTTTGCCCGTGCGCAGGTTCCAGTCATGGCCGCGGAGAGCGG
CGGAGCGGTGGAACTGATTGAGGTGGCACGTCCACATGGCGTTGCCCCCG
GCTTGTGCTCGTACTTGGGCCCCACGCTTGTTACAGCTAGCGAACAGTGA
CACCGCCGCGTTTTTCAGTACGGAGTAATAATTTTTTGTGGCATGCGAGT
TCCGGGCCCCGTCCCAACAACCTAAGGTGGGGACCTCACCAGAAGCCCCT
ATTTTCACCCGCAGGGCATAGAAACCAAGAAAAGTTGTTTGGCTTCAGCT
GGGATATGAGATGCCCATAACGCACCGTATGCCTGCGAAGTACGTGGGGT
ACCTAGGCCCCGTCTGCGCGTCAAGAACTGTGGTACAGTATGCAGAGTGC
CTGAAGTACGAGAACACTCAATCTCACACACGTGCGCTTGTACCTCGCTA
CTTAGAAGCACAGTTTATATGAATCATGACTTGCACATGCACGGCATGGC
GTAAGGGCAACCCCGAAATTCACAGTTCCGGGCCTCGGTTATCCTACAGT
AAGTGTCACTGAGTGAGGCCCATGGAGAAGCATCCAACAGCCAAGTGCCC
GCCACTGCAAAATTGGCGGCAGTGCTCGCCAAGTGTGGTCTTCGGCCACC
CCGTCATCTTACAATCCAGGCAGGGTACTGGTACAAGTGGAGCTACAGGA
GTTGCTGTAGAAACGCTGTCGGAGCTCCCATCGCTTTTCTCTGACACAAC
CTTCCCCTGGCGAGCTGTAAGCAAGGGCCACTGTTGAGGTCTTTAGTGAC
ATGGCCTGCACCTCGCCCGGTGTTGTACCTGGTAATACTGGAGGATACAT
GGG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig9:3517777..3520829+ >mRNA_S-ischiensis_contig9.20820.1 ID=mRNA_S-ischiensis_contig9.20820.1|Name=mRNA_S-ischiensis_contig9.20820.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=720bp|location=Sequence derived from alignment at S-ischiensis_contig9:3517777..3520829+ (Schizocladia ischiensis KU_0333)
ATGTGGGACTGCACGTTCTGGGTGGAGCGTCGGAGGCGGGAGAGCAGAGG
GAGGCACGCAAAGATGTGGGACTGCACGTTCTGGGTGGAGCGTCGGAGGC
GGGAGAGCAGAGGGAGGCACGCAAAGCGGGCCTTGCCAGTGGGTGGTGAG
AAGGGACAAGCCACGGGCCCAGCGCTGGGCCCCGGGAGCGGCGTGTGGCG
GGCCGGAGAGAACACCTTGGAGAGGATTGAGGCGCTGGAGGCTTCGGCCG
TGTTGGAGGTGCTTTGGGGGCGGAGACACATCAAGCACCACGAAGCGCGG
GCCTTGCCAGTGGGTGGTGAGAAGGGACAAGCCACGGGCCCAGCGCTGGG
CCCCGGGAGCGGCGTGTGGCGGGCCGGAGAGAACACCTTGGAGAGGATTG
AGGCGCTGGAGGCTTCGGCCGTGTTGGAGGTGCTTTGGGGGCGGAGACAC
ATCAAGCACCACGAAGCGGTTCCAGTCATGGCCGCGGAGAGCGGCGGAGC
GGTGGAACTGATTGAGGTGGCACGTCCACATGGCGTTGCCCCCGGCTTGT
GCTCGTACTTGGGCCCCACGCTTGTTACAGCTAGCGAACAGTGAGTTCCA
GTCATGGCCGCGGAGAGCGGCGGAGCGGTGGAACTGATTGAGGTGGCACG
TCCACATGGCGTTGCCCCCGGCTTGTGCTCGTACTTGGGCCCCACGCTTG
TTACAGCTAGCGAACAGTGA back to top
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