mRNA_S-ischiensis_contig9.20817.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20817.1
Unique NamemRNA_S-ischiensis_contig9.20817.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3501622..3503911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size386
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.1221504-CDS-S-ischiensis_contig9:3501622..35019131622817370.1221504-CDS-S-ischiensis_contig9:3501622..3501913Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3501623..3501913 -
1695741062.6872673-CDS-S-ischiensis_contig9:3501622..35019131695741062.6872673-CDS-S-ischiensis_contig9:3501622..3501913Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3501623..3501913 -
1622817370.1336982-CDS-S-ischiensis_contig9:3503818..35039111622817370.1336982-CDS-S-ischiensis_contig9:3503818..3503911Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3503819..3503911 -
1695741062.697902-CDS-S-ischiensis_contig9:3503818..35039111695741062.697902-CDS-S-ischiensis_contig9:3503818..3503911Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3503819..3503911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20817.1prot_S-ischiensis_contig9.20817.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3501623..3503911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20817.1

>prot_S-ischiensis_contig9.20817.1 ID=prot_S-ischiensis_contig9.20817.1|Name=mRNA_S-ischiensis_contig9.20817.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=128bp
GEARLSSVWAANAVIHRPFSAPRPALSELYSRPPTPAWAWAAADSGRQTG
MPQPAQYPDWRPQPSGPGPGAMDTDFPTAHAPVASPAVDYSAAAATPRDP
PPPPRGAAAAGAGFSVFRPWWARSALAP
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mRNA from alignment at S-ischiensis_contig9:3501622..3503911-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20817.1 ID=mRNA_S-ischiensis_contig9.20817.1|Name=mRNA_S-ischiensis_contig9.20817.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2290bp|location=Sequence derived from alignment at S-ischiensis_contig9:3501622..3503911- (Schizocladia ischiensis KU_0333)
GGGGAGGCCCGGCTGAGCTCGGTGTGGGCAGCCAACGCAGTGATTCACCG
GCCCTTCTCGGCACCCAGGCCCGCGCTCTCCGAGCTGTACTCGGTGAGCT
GAGTTGTTTGTGTGTTCTGGTGTTTTGTGGTGTGTGTGCGTGCATGTGTG
CGCGTGTGCGTGTGCGTGCGTGTGCTTGTGGGTGCTTCTCTTCGGTGCTG
TGTGTTGTTGGTGGAGTGTGCATGTGCGTTTGTGCATGCGTGCGTGCGTA
TGTGTATTTCATGCGTGTCTTGGCCGGGCACGGGCCCCCTCATGCTTCCC
CCCCCCCTCCTCCCCACACACACATATGCATTGTAGCTAGCGCCCCCCTT
GTTTTTAGTTCTTCAGTTTAGTAGCCACTAATTTCGCCTCGCACGACGCG
CGGGGTCAATGGTCTCGGGACTACGGCAAGCACCATGTGAGTACATATAT
ACTCATACGAGAACACTCAATTCTTAAATGTGATGGCCACTAGTACGAGA
AAACTCAATCTCACACACGTGCGATTGTACTTGATTACAATTTATGTGAA
TCGCCCCCTCGTGCTGTGAGCGCCGGGATCCACGGGATCACTGGAGAATG
GCCCCTCACTGCCACTCCACAGGAACGATCCTCATGCACAGTTCTCCTGT
TAGAGTATTGAAGTGGCAAAGGCCTACCAGTTTACTTAACTGTTAACCAG
TCGTGTGACCGGTCGGGTTTAGCCGGTTGCCGAAAACGGCGAACATATCG
CCAAAATCAACGAATAACGGTCATGTCACCCGCTCCTCTTACACGATTGG
CCACCGGTCGATCAACCGGTTAAACCAGTCAACTGGAACTGACCAGCAAA
AACCGGCACCAGTTCACAACACTGTACTCTATCCATGCAATGAGTGCAGC
ACAGTACAGCACGGCACAGGTTGTCTGCCTGCCAGCACTCGGGCCCAGGC
TGTGCTGGCAACCTGTCATGTGCAGACCAAGTGACCGTCTTGCGGCAGTC
ACTCCCCACCTACCCGTGTCCTACAGTAGTACGGATGCCTCCCCTTCTCG
ACACAAATTTCCCCTGGCGAGCTATAGGGAAGGGCCACTGCTGAGGTCTT
TAGTGACGTGGCCCGCACCTCGCCCCGTATTGTTCCTGTTGATGCTGCAG
TAGTGCGTAAGCACTTCCGGACGTACCTTAATCGTCGGAGAGATCTTGCC
CCCCCATGGGAGAACTTTGCTCGCTGAATACTGGTCGGATTCGCACGGGA
AACCTCGGAAAAAGTACCCTCAGGACCTGGAGGTATTTGTCCGAGAGATT
TCGAGATAACTGGGGACGTGTGCGGCCAGAAATATTCTCCCGAAAATTGT
CCCGGGGGGGCAAGGTCTCTCCGCCGATTACGGTATGCAGTACCAGCTCT
ACATGTCACACAAGTACGAGTACTTCGAAGTACCCCGTGTAGAGTTAAGG
GTATGCAAGCGCTGCCGTGGCACTGCTCGCCTTGGTGTTGCTCCGAAAAA
CTTGCGTCGGCTGCTCGCGGCGGAGGCCGAGGGTTCACGGAAGCAGCCAC
CAGAGATCAGGTACCTGCGTTATGAAAGTGGCCTGCGTGTGCTGCAAGGC
TTTGAAGTGCCCCCAACAGTATTTTCCTCTTCAAGTGCTAGTTAAGCCTC
GCCCGACTTGCCACAGTAGGTGTTACCAGCCAATGCATATGCCAACTGAT
TGTCACTACTACTGAGTAACTTGGTGTTTAGGCGGCTCCCGCAGCAACGG
CACCATACTGTACAAAGTACTTCTGAAGTGCTTCGAAACATGTAGTACTC
GTACTCGTTAGTCATTGGTCTCGGGACTACGGCAAGCACAACATGAGTAC
ATATACTTCGACGTATATATACTGGTTAGCTCACATATCCGGAAAACTCT
ACTGTACAGTAGTACTCCTCCACTTACAAGCACTCCCGCTCCCCCTCCCC
CTGCCTGCCGGCAACCGCCCCTTGCCACAACCGCCGCTTTGCCCCCAGCG
GCCACCCACCCCTGCCTGGGCCTGGGCTGCGGCAGACTCGGGCAGGCAGA
CCGGCATGCCTCAACCGGCCCAATACCCTGATTGGCGACCACAGCCATCA
GGCCCGGGTCCAGGTGCCATGGACACTGACTTCCCCACAGCACATGCGCC
AGTGGCTTCTCCCGCAGTCGATTACTCTGCCGCCGCCGCCACGCCTAGAG
ACCCGCCGCCGCCGCCCCGCGGCGCCGCCGCCGCCGGAGCCGGATTCAGC
GTCTTTCGGCCGTGGTGGGCCAGGAGTGCACTTGCGCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3501622..3503911-

>mRNA_S-ischiensis_contig9.20817.1 ID=mRNA_S-ischiensis_contig9.20817.1|Name=mRNA_S-ischiensis_contig9.20817.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=768bp|location=Sequence derived from alignment at S-ischiensis_contig9:3501622..3503911- (Schizocladia ischiensis KU_0333)
GGGGAGGCCCGGCTGAGCTCGGTGTGGGCAGCCAACGCAGTGATTCACCG
GCCCTTCTCGGCACCCAGGCCCGCGCTCTCCGAGCTGTACTCGGGGGAGG
CCCGGCTGAGCTCGGTGTGGGCAGCCAACGCAGTGATTCACCGGCCCTTC
TCGGCACCCAGGCCCGCGCTCTCCGAGCTGTACTCGCGGCCACCCACCCC
TGCCTGGGCCTGGGCTGCGGCAGACTCGGGCAGGCAGACCGGCATGCCTC
AACCGGCCCAATACCCTGATTGGCGACCACAGCCATCAGGCCCGGGTCCA
GGTGCCATGGACACTGACTTCCCCACAGCACATGCGCCAGTGGCTTCTCC
CGCAGTCGATTACTCTGCCGCCGCCGCCACGCCTAGAGACCCGCCGCCGC
CGCCCCGCGGCGCCGCCGCCGCCGGAGCCGGATTCAGCGTCTTTCGGCCG
TGGTGGGCCAGGAGTGCACTTGCGCCCCGGCCACCCACCCCTGCCTGGGC
CTGGGCTGCGGCAGACTCGGGCAGGCAGACCGGCATGCCTCAACCGGCCC
AATACCCTGATTGGCGACCACAGCCATCAGGCCCGGGTCCAGGTGCCATG
GACACTGACTTCCCCACAGCACATGCGCCAGTGGCTTCTCCCGCAGTCGA
TTACTCTGCCGCCGCCGCCACGCCTAGAGACCCGCCGCCGCCGCCCCGCG
GCGCCGCCGCCGCCGGAGCCGGATTCAGCGTCTTTCGGCCGTGGTGGGCC
AGGAGTGCACTTGCGCCC
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