mRNA_S-ischiensis_contig9.20816.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20816.1
Unique NamemRNA_S-ischiensis_contig9.20816.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3498153..3500882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.0779543-CDS-S-ischiensis_contig9:3498152..34985061622817370.0779543-CDS-S-ischiensis_contig9:3498152..3498506Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3498153..3498506 -
1695741062.659317-CDS-S-ischiensis_contig9:3498152..34985061695741062.659317-CDS-S-ischiensis_contig9:3498152..3498506Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3498153..3498506 -
1622817370.090144-CDS-S-ischiensis_contig9:3500798..35008821622817370.090144-CDS-S-ischiensis_contig9:3500798..3500882Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3500799..3500882 -
1695741062.67341-CDS-S-ischiensis_contig9:3500798..35008821695741062.67341-CDS-S-ischiensis_contig9:3500798..3500882Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3500799..3500882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20816.1prot_S-ischiensis_contig9.20816.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3498153..3500882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20816.1

>prot_S-ischiensis_contig9.20816.1 ID=prot_S-ischiensis_contig9.20816.1|Name=mRNA_S-ischiensis_contig9.20816.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=146bp
GGLALADPLSAEVVKYVPPAAQQFSSSQVSASLETLQRRKRRLHAAGRLS
DDGSGDNDGDDDDGTPRPPPKPAPPPPEASRPAGMPTGATGTLWGRSRLP
APLSAETATPEASAAGHGCNGVDGGGGSGGGGGGGGPCPGPGPALP
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mRNA from alignment at S-ischiensis_contig9:3498153..3500882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20816.1 ID=mRNA_S-ischiensis_contig9.20816.1|Name=mRNA_S-ischiensis_contig9.20816.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2730bp|location=Sequence derived from alignment at S-ischiensis_contig9:3498153..3500882- (Schizocladia ischiensis KU_0333)
GGTGGCTTGGCGCTGGCGGACCCCTTGTCGGCAGAAGTGGTCAAGTACGT
GCCCCCGGCGGCTCAGCAGTTTTCCAGCAGCCAGGTGTGTGCGTGTGCGT
GTGTGTGCGTGTGTGCGTGTGTGTGCGTGTGCGTGTGTGTGTGTGTGTGC
GCGCGCGTGTGTGTGTGTGTGTGTGTGCGTGCGCGCGCGTGTGTATGTGT
GTATGTGTGTGCGTGTGTGTGTGTGTGTGCTTGTGTCTGTTTGCCACAGT
GCCATACTGCCATATGCAGTCATAAATATTGTATATGTACTACTTCGGAA
GTATACTTACACATACACAGTACACAGTATGCATGCACCGAGACACCACT
CTGCTATATTAAGCCAACCGACTCTACTATAGCTATTGAAGCAGTAGCGG
TGCCACTGAGCAGTTTGGGAGTGTGTGTGAAGGCTACTAACATGCTACTA
CTGTAGGTACATACCTACTAGTACACATACTTTGAGCTCCAAAGAAAGGC
ATTGGGGTCAGCAGGCCTCGAGCCGCAAGTGATTTACGAAGTATCATTCA
TGAGCCCTGTGTCCAGCGCGGCTGCGGCCCCTGCTTCCAGAGAGAACGGG
GCGGGTGGCGTGGTGTACTCAGTGACTGGCAAGCACTCACGGCCCCCCCA
GTCGCATTCGTCGCGATGCAAGATCGTTACTCGAAAGGAAAGTATTAACA
GGAACAACATGGGGCGAGGCGCAGGCCAGGTCAGTAAAGACCTCAGCAGT
GGCCCTTCCTTATAGCTCGCCAGGGGAAATTTGTGTGGGGAAGGAGAGAA
AAGGAGGAGGGGAAAGTGGTGGACGGGGAGGAGGAGGAGGAGGACGAGGA
CGAGGACGAGGAGGGGGAGGGGGGGGGGGAAGGAAGAGGAAGGAGAGCAT
AGTACTTCAAAGTATTCCAAGCAGACACAGTATGTAGGTGACATGCGGAC
CACTTCACTATGCACACAAGCGACCTCAACTGCGGGCCTTCTGTCACTCG
CAACAAAGCGCAATGCAACTACAGTACTTTACTTGCGGCAGAATTTCGCA
AGTGACTTTCCACCGGCATGTAGCACTTACGTACAAGTCCCAACTTAGTA
CTGCGGAACTACCCGACACCAACGTTTATTGTGGCCCATTTTCCCGTTTT
CCTTTCTTGTACCGAAAAGTGCAGTACCTGCTTTTGAAGCCCACTGGCGT
CGATATGGACACTCCCCGCGCACGGCTAGCATTCACGGTAGGCAACGTTA
CTCTGCGATGTTGTTACAGGACTTGGTGGTGTGGGCACGACCCTCATCTG
TTTTTGTTTCTGCGAAACTTGGCATGTGTTTTGTCTCCGCGTGATCACAT
TTTGGCATGCCACCCCATGGGCGCGTTTAGCCGCGCACAACTGGGGCCCC
TGTGAGTTGCAGGTGACCCCCCCCCCTGCCCCGTCTCTTGCCAGGACTGC
TCTGCTGTCCTATTGAAGAGGTTCTACAAAAATTCTGTAGAGTACAAGTA
GAAGCACTTCGAAGCACTGTACTGTACAACACATTACCGAACTGCTCGAA
GTACTGTATGATATTTAGTAACGTGCCCTGCACATCGCCCTGTGTTGTTC
CTGTTAATACTATACTCGTATGTGCTGTACCACCCTCCCGTGGCTCTCCT
GAGTGTATAACATACTGTACCTCGAGGCACTTGAGTACATAGTAGTATTT
TCATACCGTGCTCCAGGTATCTTAACGAGTACGTATGCAGCGCTCTACGA
TTGGGCGCATTGCCCTGGCAGGCGAGCGCTTTTGCAGGACAGCACAGCAG
TCGCACCATCTACAGTACCCGTACTCTTGTACTTGAAGTACATACACTGG
CAGCACTTCTCCCAACCGTTGTCCCGGTCACATGACCCGACCTTGATGCG
ATCCCTTTTGCAGGACAGCACAGTAGTCACACCTTCTACAGTACCAGCAC
TCACGTACATACACTGGCAGCGCTTCTCCCAACCGCTGTCCCATCACATG
ACCCAACCTTGACGCGAGCCCTTTTGCAGGACAGCACAGCAGTCACACCT
TCTACAGTACCCCCACGTACACACACTGGCAGTGCTTCTCCCAACCGCTG
TCCCATCACATGACCCAACCTTGACGCGAGCCCTTTTGCAGGACAGCACA
GTAGTCGCACCTTCTACAGTACCCGCACTCTCGTCCATACACTGGCAGCG
CTTCTCCCAACCGCTGTCCCATCGCATGACCCGACCTTGACGCGCGCCCT
TTTGCAGGACGGCACAGTAGTCACACCTTCCACAGTACCCGTACTTCGTA
CATACACTGGCAGCGCTTCTCTCAACCGCTGTCCCCTCACACGACCCGAC
CTTGACACAACATCCATGGCGAGCAGGTAAGCGCCTCCTTGGAGACACTT
CAGCGGAGGAAACGGCGCCTGCACGCCGCGGGTAGGCTCAGCGACGATGG
CAGCGGCGACAACGACGGTGACGACGACGACGGCACGCCGCGGCCGCCGC
CCAAGCCAGCGCCTCCTCCGCCCGAAGCATCGCGACCCGCGGGCATGCCC
ACTGGTGCTACCGGCACGTTGTGGGGGCGCTCACGCTTGCCCGCGCCGCT
TAGTGCCGAGACGGCCACGCCAGAAGCGTCCGCCGCGGGCCACGGTTGTA
ACGGCGTTGACGGCGGCGGTGGCAGTGGCGGCGGCGGCGGCGGCGGTGGC
CCCTGCCCTGGCCCGGGTCCGGCCCTGCCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3498153..3500882-

>mRNA_S-ischiensis_contig9.20816.1 ID=mRNA_S-ischiensis_contig9.20816.1|Name=mRNA_S-ischiensis_contig9.20816.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=876bp|location=Sequence derived from alignment at S-ischiensis_contig9:3498153..3500882- (Schizocladia ischiensis KU_0333)
GGTGGCTTGGCGCTGGCGGACCCCTTGTCGGCAGAAGTGGTCAAGTACGT
GCCCCCGGCGGCTCAGCAGTTTTCCAGCAGCCAGGGTGGCTTGGCGCTGG
CGGACCCCTTGTCGGCAGAAGTGGTCAAGTACGTGCCCCCGGCGGCTCAG
CAGTTTTCCAGCAGCCAGGTAAGCGCCTCCTTGGAGACACTTCAGCGGAG
GAAACGGCGCCTGCACGCCGCGGGTAGGCTCAGCGACGATGGCAGCGGCG
ACAACGACGGTGACGACGACGACGGCACGCCGCGGCCGCCGCCCAAGCCA
GCGCCTCCTCCGCCCGAAGCATCGCGACCCGCGGGCATGCCCACTGGTGC
TACCGGCACGTTGTGGGGGCGCTCACGCTTGCCCGCGCCGCTTAGTGCCG
AGACGGCCACGCCAGAAGCGTCCGCCGCGGGCCACGGTTGTAACGGCGTT
GACGGCGGCGGTGGCAGTGGCGGCGGCGGCGGCGGCGGTGGCCCCTGCCC
TGGCCCGGGTCCGGCCCTGCCAGTAAGCGCCTCCTTGGAGACACTTCAGC
GGAGGAAACGGCGCCTGCACGCCGCGGGTAGGCTCAGCGACGATGGCAGC
GGCGACAACGACGGTGACGACGACGACGGCACGCCGCGGCCGCCGCCCAA
GCCAGCGCCTCCTCCGCCCGAAGCATCGCGACCCGCGGGCATGCCCACTG
GTGCTACCGGCACGTTGTGGGGGCGCTCACGCTTGCCCGCGCCGCTTAGT
GCCGAGACGGCCACGCCAGAAGCGTCCGCCGCGGGCCACGGTTGTAACGG
CGTTGACGGCGGCGGTGGCAGTGGCGGCGGCGGCGGCGGCGGTGGCCCCT
GCCCTGGCCCGGGTCCGGCCCTGCCA
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