mRNA_S-ischiensis_contig9.20813.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20813.1
Unique NamemRNA_S-ischiensis_contig9.20813.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3484480..3486834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size541
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20813.1prot_S-ischiensis_contig9.20813.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3484501..3486767 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817369.990919-UTR-S-ischiensis_contig9:3484479..34845001622817369.990919-UTR-S-ischiensis_contig9:3484479..3484500Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3484480..3484500 +
1695741062.5941992-UTR-S-ischiensis_contig9:3484479..34845001695741062.5941992-UTR-S-ischiensis_contig9:3484479..3484500Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3484480..3484500 +
1622817370.0421252-UTR-S-ischiensis_contig9:3486767..34868341622817370.0421252-UTR-S-ischiensis_contig9:3486767..3486834Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3486768..3486834 +
1695741062.6399941-UTR-S-ischiensis_contig9:3486767..34868341695741062.6399941-UTR-S-ischiensis_contig9:3486767..3486834Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3486768..3486834 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.0023174-CDS-S-ischiensis_contig9:3484500..34847251622817370.0023174-CDS-S-ischiensis_contig9:3484500..3484725Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3484501..3484725 +
1695741062.6054745-CDS-S-ischiensis_contig9:3484500..34847251695741062.6054745-CDS-S-ischiensis_contig9:3484500..3484725Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3484501..3484725 +
1622817370.0155365-CDS-S-ischiensis_contig9:3484874..34849311622817370.0155365-CDS-S-ischiensis_contig9:3484874..3484931Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3484875..3484931 +
1695741062.6185353-CDS-S-ischiensis_contig9:3484874..34849311695741062.6185353-CDS-S-ischiensis_contig9:3484874..3484931Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3484875..3484931 +
1622817370.0294116-CDS-S-ischiensis_contig9:3486596..34867671622817370.0294116-CDS-S-ischiensis_contig9:3486596..3486767Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3486597..3486767 +
1695741062.628795-CDS-S-ischiensis_contig9:3486596..34867671695741062.628795-CDS-S-ischiensis_contig9:3486596..3486767Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3486597..3486767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20813.1

>prot_S-ischiensis_contig9.20813.1 ID=prot_S-ischiensis_contig9.20813.1|Name=mRNA_S-ischiensis_contig9.20813.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=151bp
MEDSLSFEEPTADDIERRREARKKRRKKQAAPPPRFPYYETTQLGAALVS
TLTSAVEGGTAGVEQARAMVETFEKVVEKELRSLQGVGAKGTLKGKVNFS
KHLATSAVDVWIFDVKDAEVTQTRAGNGSRAPVGTFRLGDTKILATREPT
*
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mRNA from alignment at S-ischiensis_contig9:3484480..3486834+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20813.1 ID=mRNA_S-ischiensis_contig9.20813.1|Name=mRNA_S-ischiensis_contig9.20813.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2355bp|location=Sequence derived from alignment at S-ischiensis_contig9:3484480..3486834+ (Schizocladia ischiensis KU_0333)
GGTGGGGAAAGGGGTGTCATCATGGAGGATTCCCTGTCATTCGAGGAGCC
GACGGCCGATGACATTGAGAGGAGGCGGGAGGCGAGGAAGAAGAGGCGGA
AGAAACAGGCAGCCCCCCCTCCGCGTTTCCCGTACTACGAGACTACACAA
CTGGGGGCGGCCCTTGTCAGTACACTGACATCGGCCGTCGAGGGTGGCAC
TGCGGGCGTGGAACAAGCCCGTGCAATGGTGGAGACATTCGAAAAGGTGT
GTGCAGTTGCAGCGCAGGAGTTGTGCCGTGTTTCGTTATCTGCTGCCACC
GCCAGACCTGGCTGCCGGGGCAACCCTGCCTGACAGTTCCTGTTTGTTCG
ATGCCCGTGGATGCCCATCCCGTTGTTGTGTATCCTTTCTTCCAGGTTGT
GGAGAAAGAACTGCGCTCCTTGCAAGGCGTCGGGGCCAAGGGCACGTTGA
AGGTGCGTCCAGGCAAACAGTGCCCACCGGTGGGATGTATCTTTGTGGTC
GCGAGGGCCCCGTGTTCATAGCGTTGAGCCTTTGGCCACAGGGTGCAAGG
ACTACAGGTGTATGTGCATTTAGACCGTTCCCTGGGTTACTGTCCAACAG
CTCTACCGGCTTCCCACACAGCCCGCTGGTTTCGAATCGCTCTCTTCCAG
AACAGAGGGCACATTTCGTTCGGGCTCAGGGCGATGAGTGAACGCTTTCT
CTTCCCGGGAAGTGGGCCCAAGAGTCTCGCAGGACACGTATCGCATACGT
TGGCTCCGTGTTCCGTCAATTTCTCGTTTATCGTCCTCACTTGGCTTGCA
AGCAGTCACGGTACTTCAAAGTAGTAGTAAAGCGAGTATTTCGTACTTTC
GTGCTGAAGCCTCACTGGCCTAACCAGGCGTAGTCAGCCAACGCACATGG
CAAATACGGATTACACTACTGCGCTGCGAACTAGGGGCGCAGGTGGCCTC
CGCCGGGGGGGGCGACTTAAAGTACTGCAGCACTTGTAAGGCTGCTGTAC
TGTGCAGTATACACGGGTCAATGGTCTTTTGACTATGGCATGCACAACAT
GGAGAGCTGTGAACCGGCCCCGTTTTTTACCGGTCGCTTCCGGCTACCCG
GCCCACCTAACCGTGGGCCGGTCGCTTCCGGCTAACCGTCCCACCTAACT
GGCCCACCGGTTAAACGGGCCGTAGCCTTACCCTGTTTCTCCGTTCTTTC
TCCCCTGCAATCATGCGTATCGCCGGTTTCGGCCGAAATATAGCCGTTCT
CTCTCTCTCTCTGCACTCTACTCCTTGGCTTGCCTTGCGTCAAGACTTGC
GCACACGTCGCGCTTGGTGGGCCAGTCCCCCTCCCCCTGTGATCCCCGCA
ACATCCTACTCGCCCGTAACGGGACGGTTTCGGACCGAAACAGAAAAGAG
AGGCGCGCTCCATACCCGAGTTTCCCTTGCAAATATGAAGTACCTCTTTC
ATCGCAGTTCCGAGGGTGATGGTACAGCGGTAGGTACTCCTAGGCGAATC
AGCGAGCGCAAATGCTGTTTGAGAAAGTATATTCTCCTCAACCCACTGTG
GTACTGTAGTCTCCAAGGAGTGCGTGGGGAGGAGGAGGGGGAGGAGGAGG
AAGGAGAGGGGGGGGGGGCGGGATGGTTGTACCCCGCCCTTCCAATGAGT
AGGTAGAGCCCAGCTGCAGTAGCTTCTCACCCCAATGTATATACTTCGAA
GTACTCGTACGCATGTACTCACGTTGTGCTTGCCGTATTCCCGAGACCAT
TGACCACGCGCCTTGGTCGGACGGAGCAGGACCCCTCCCTCCCCTGGCAG
AGCAGTACTTCGAAGTAGGTAGTAAACTCACCGTCAGGCAAGTTGCAGAA
GCCGCAAGCGCCAGCTATGTGATGTGATGTGATGTGACGTGGCGAGGTGT
GAAGCACAACACACTTAGAGTAGGTCCCTGCAGTTTCACATCACGCCACA
CACAACACACCAGGCAAAGCATACCGCTGCAACAGAGTTGTGGTTGGTGC
TGCGGTTGAGCCACACGCAACGTCGAACTACGGAGTACTATAGAAACCCC
CCGATCCTCAAAGATGTCGACCTCGCCAGCCCCCCCCCCCCGGACGCATG
CCTGGACTTGCATGCAGGGCAAGGTCAATTTCTCCAAGCACTTGGCCACC
TCGGCTGTGGATGTGTGGATATTCGACGTCAAGGATGCGGAGGTCACTCA
GACTCGCGCTGGCAATGGCTCTCGCGCCCCCGTAGGCACCTTCCGGCTGG
GTGACACCAAGATTCTCGCTACCCGGGAGCCGACATAGCGCTGAAACCTT
TGGGGACGACGGGACATAACAGTATACTTATATATGTATATATATATGCT
CCACC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3484480..3486834+

>mRNA_S-ischiensis_contig9.20813.1 ID=mRNA_S-ischiensis_contig9.20813.1|Name=mRNA_S-ischiensis_contig9.20813.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=906bp|location=Sequence derived from alignment at S-ischiensis_contig9:3484480..3486834+ (Schizocladia ischiensis KU_0333)
ATGGAGGATTCCCTGTCATTCGAGGAGCCGACGGCCGATGACATTGAGAG
GAGGCGGGAGGCGAGGAAGAAGAGGCGGAAGAAACAGGCAGCCCCCCCTC
CGCGTTTCCCGTACTACGAGACTACACAACTGGGGGCGGCCCTTGTCAGT
ACACTGACATCGGCCGTCGAGGGTGGCACTGCGGGCGTGGAACAAGCCCG
TGCAATGGTGGAGACATTCGAAAAGATGGAGGATTCCCTGTCATTCGAGG
AGCCGACGGCCGATGACATTGAGAGGAGGCGGGAGGCGAGGAAGAAGAGG
CGGAAGAAACAGGCAGCCCCCCCTCCGCGTTTCCCGTACTACGAGACTAC
ACAACTGGGGGCGGCCCTTGTCAGTACACTGACATCGGCCGTCGAGGGTG
GCACTGCGGGCGTGGAACAAGCCCGTGCAATGGTGGAGACATTCGAAAAG
GTTGTGGAGAAAGAACTGCGCTCCTTGCAAGGCGTCGGGGCCAAGGGCAC
GTTGAAGGTTGTGGAGAAAGAACTGCGCTCCTTGCAAGGCGTCGGGGCCA
AGGGCACGTTGAAGGGCAAGGTCAATTTCTCCAAGCACTTGGCCACCTCG
GCTGTGGATGTGTGGATATTCGACGTCAAGGATGCGGAGGTCACTCAGAC
TCGCGCTGGCAATGGCTCTCGCGCCCCCGTAGGCACCTTCCGGCTGGGTG
ACACCAAGATTCTCGCTACCCGGGAGCCGACATAGGGCAAGGTCAATTTC
TCCAAGCACTTGGCCACCTCGGCTGTGGATGTGTGGATATTCGACGTCAA
GGATGCGGAGGTCACTCAGACTCGCGCTGGCAATGGCTCTCGCGCCCCCG
TAGGCACCTTCCGGCTGGGTGACACCAAGATTCTCGCTACCCGGGAGCCG
ACATAG
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