mRNA_S-ischiensis_contig9.20809.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20809.1
Unique NamemRNA_S-ischiensis_contig9.20809.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3427352..3428005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size218
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817369.8757787-CDS-S-ischiensis_contig9:3427352..34274861622817369.8757787-CDS-S-ischiensis_contig9:3427352..3427486Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3427353..3427486 -
1695741062.5366766-CDS-S-ischiensis_contig9:3427352..34274861695741062.5366766-CDS-S-ischiensis_contig9:3427352..3427486Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3427353..3427486 -
1622817369.8905456-CDS-S-ischiensis_contig9:3427923..34280051622817369.8905456-CDS-S-ischiensis_contig9:3427923..3428005Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3427924..3428005 -
1695741062.5476391-CDS-S-ischiensis_contig9:3427923..34280051695741062.5476391-CDS-S-ischiensis_contig9:3427923..3428005Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3427924..3428005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20809.1prot_S-ischiensis_contig9.20809.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3427353..3428005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20809.1

>prot_S-ischiensis_contig9.20809.1 ID=prot_S-ischiensis_contig9.20809.1|Name=mRNA_S-ischiensis_contig9.20809.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=72bp
STQTGSGAGECSRKGQCSPDSGRRGAAGSSVLLSSPTGTITVAAGNRNRH
EKNASPRRAATKSTEEQISRDG
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mRNA from alignment at S-ischiensis_contig9:3427352..3428005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20809.1 ID=mRNA_S-ischiensis_contig9.20809.1|Name=mRNA_S-ischiensis_contig9.20809.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=654bp|location=Sequence derived from alignment at S-ischiensis_contig9:3427352..3428005- (Schizocladia ischiensis KU_0333)
TCCACGCAAACGGGTTCGGGGGCGGGGGAGTGCTCCCGGAAAGGGCAATG
CAGCCCAGACTCTGGAAGGAGGGGCGCCGCAGGTTTGTGTGCATGTGTGT
GTGTGTGTGTGTGTGTGACTGGAAAGGCGCTTGGTCTGACCTTTTTTCCT
TTCCGCTTGCTGTCTCTGATTTTTTGTTTTGTCAGAACCCCCGACTGCTT
GGGTCGGTTTTGTTTCATAGATATATGCTAATCTCAAGTACTTCCAAGTA
TTCACAGTCAGTTATCGTCTACACTGCCGTACGTGATGTGATGTGCGTTC
TGATGCACCACCACGGCTTGATTGACATACGTCAACACACACCACGCCAC
AGCCAACTACAGTACCTCTTTCATCTTGTATATTTGGTGTTTGAATGAAC
ATATATCCTTCAATCACGATTTACGGTTATTTAAGTACATTCTTCATATA
TTCACCATAGCCAGGTTTATTCAATGATGCCGTCGAATCGGCCGCGCTGC
AATGTACCGTACCACTCAGGCTCCTCGGTGCTCCTTTCCAGCCCCACTGG
AACCATCACCGTGGCCGCCGGAAACCGAAACCGCCACGAGAAGAACGCCT
CCCCCCGCAGAGCAGCAACAAAATCCACTGAGGAGCAGATCAGCCGTGAC
GGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3427352..3428005-

>mRNA_S-ischiensis_contig9.20809.1 ID=mRNA_S-ischiensis_contig9.20809.1|Name=mRNA_S-ischiensis_contig9.20809.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=432bp|location=Sequence derived from alignment at S-ischiensis_contig9:3427352..3428005- (Schizocladia ischiensis KU_0333)
TCCACGCAAACGGGTTCGGGGGCGGGGGAGTGCTCCCGGAAAGGGCAATG
CAGCCCAGACTCTGGAAGGAGGGGCGCCGCAGTCCACGCAAACGGGTTCG
GGGGCGGGGGAGTGCTCCCGGAAAGGGCAATGCAGCCCAGACTCTGGAAG
GAGGGGCGCCGCAGGCTCCTCGGTGCTCCTTTCCAGCCCCACTGGAACCA
TCACCGTGGCCGCCGGAAACCGAAACCGCCACGAGAAGAACGCCTCCCCC
CGCAGAGCAGCAACAAAATCCACTGAGGAGCAGATCAGCCGTGACGGCGC
TCCTCGGTGCTCCTTTCCAGCCCCACTGGAACCATCACCGTGGCCGCCGG
AAACCGAAACCGCCACGAGAAGAACGCCTCCCCCCGCAGAGCAGCAACAA
AATCCACTGAGGAGCAGATCAGCCGTGACGGC
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