mRNA_S-ischiensis_contig9.20797.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20797.1
Unique NamemRNA_S-ischiensis_contig9.20797.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3324372..3324893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size522
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20797.1prot_S-ischiensis_contig9.20797.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3324436..3324756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.6515605-UTR-S-ischiensis_contig9:3324371..33244351622817373.6515605-UTR-S-ischiensis_contig9:3324371..3324435Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3324372..3324435 +
1695741064.4536393-UTR-S-ischiensis_contig9:3324371..33244351695741064.4536393-UTR-S-ischiensis_contig9:3324371..3324435Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3324372..3324435 +
1622817373.6799672-UTR-S-ischiensis_contig9:3324756..33248931622817373.6799672-UTR-S-ischiensis_contig9:3324756..3324893Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3324757..3324893 +
1695741064.4746714-UTR-S-ischiensis_contig9:3324756..33248931695741064.4746714-UTR-S-ischiensis_contig9:3324756..3324893Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3324757..3324893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.6683114-CDS-S-ischiensis_contig9:3324435..33247561622817373.6683114-CDS-S-ischiensis_contig9:3324435..3324756Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3324436..3324756 +
1695741064.4646637-CDS-S-ischiensis_contig9:3324435..33247561695741064.4646637-CDS-S-ischiensis_contig9:3324435..3324756Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3324436..3324756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20797.1

>prot_S-ischiensis_contig9.20797.1 ID=prot_S-ischiensis_contig9.20797.1|Name=mRNA_S-ischiensis_contig9.20797.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=107bp
MTIYYYTIPTRRGGEVSGLQCPSLEKKNLAAPLSGTSLTAVTSTTRSQLP
VLACSCLPVATAPRHWRASPGSRRAATHSLRPPLTPRCHLTLPRSTNSRF
RPSRGL*
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mRNA from alignment at S-ischiensis_contig9:3324372..3324893+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20797.1 ID=mRNA_S-ischiensis_contig9.20797.1|Name=mRNA_S-ischiensis_contig9.20797.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=522bp|location=Sequence derived from alignment at S-ischiensis_contig9:3324372..3324893+ (Schizocladia ischiensis KU_0333)
ATTGACCTACAGCAATGCACGTGCCTGTAGAGGGAGGGGTTTGTGTCTGC
TTCGAAGAGTGGCGATGACTATATATTACTATACTATACCTACCAGGAGG
GGGGGGGAGGTTTCCGGCCTGCAGTGCCCGAGCCTCGAGAAAAAAAACCT
AGCCGCTCCCTTGAGCGGCACCTCGCTGACTGCGGTGACTAGCACGACAC
GCTCCCAGCTCCCGGTTCTGGCCTGCAGTTGCCTGCCCGTGGCCACTGCG
CCGCGCCATTGGCGTGCCTCTCCGGGGAGCCGTAGAGCTGCCACACACAG
CCTGCGTCCGCCCCTTACCCCTCGCTGTCACTTAACTCTTCCCCGCTCCA
CAAACTCCCGGTTTCGTCCGTCCCGGGGACTCTGAAACCTAGCCGTTTCG
CGGGGGGGGAAGACACAGCTTGGGGACACCAACATGCAGGAACCGTCGGT
TCAGGCTCGCACATATGCGGGATAATATTAAATAATCAAGGATAACACAC
TCCTAACACGATGTCAATTTTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3324372..3324893+

>mRNA_S-ischiensis_contig9.20797.1 ID=mRNA_S-ischiensis_contig9.20797.1|Name=mRNA_S-ischiensis_contig9.20797.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=642bp|location=Sequence derived from alignment at S-ischiensis_contig9:3324372..3324893+ (Schizocladia ischiensis KU_0333)
ATGACTATATATTACTATACTATACCTACCAGGAGGGGGGGGGAGGTTTC
CGGCCTGCAGTGCCCGAGCCTCGAGAAAAAAAACCTAGCCGCTCCCTTGA
GCGGCACCTCGCTGACTGCGGTGACTAGCACGACACGCTCCCAGCTCCCG
GTTCTGGCCTGCAGTTGCCTGCCCGTGGCCACTGCGCCGCGCCATTGGCG
TGCCTCTCCGGGGAGCCGTAGAGCTGCCACACACAGCCTGCGTCCGCCCC
TTACCCCTCGCTGTCACTTAACTCTTCCCCGCTCCACAAACTCCCGGTTT
CGTCCGTCCCGGGGACTCTGAATGACTATATATTACTATACTATACCTAC
CAGGAGGGGGGGGGAGGTTTCCGGCCTGCAGTGCCCGAGCCTCGAGAAAA
AAAACCTAGCCGCTCCCTTGAGCGGCACCTCGCTGACTGCGGTGACTAGC
ACGACACGCTCCCAGCTCCCGGTTCTGGCCTGCAGTTGCCTGCCCGTGGC
CACTGCGCCGCGCCATTGGCGTGCCTCTCCGGGGAGCCGTAGAGCTGCCA
CACACAGCCTGCGTCCGCCCCTTACCCCTCGCTGTCACTTAACTCTTCCC
CGCTCCACAAACTCCCGGTTTCGTCCGTCCCGGGGACTCTGA
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