mRNA_S-ischiensis_contig9.20796.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20796.1
Unique NamemRNA_S-ischiensis_contig9.20796.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3319533..3322533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1071
Cds size795
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20796.1prot_S-ischiensis_contig9.20796.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3319808..3322533 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817369.457482-UTR-S-ischiensis_contig9:3319532..33198071622817369.457482-UTR-S-ischiensis_contig9:3319532..3319807Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3319533..3319807 +
1695741062.297171-UTR-S-ischiensis_contig9:3319532..33198071695741062.297171-UTR-S-ischiensis_contig9:3319532..3319807Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3319533..3319807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817369.4710999-CDS-S-ischiensis_contig9:3319807..33199571622817369.4710999-CDS-S-ischiensis_contig9:3319807..3319957Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3319808..3319957 +
1695741062.3100836-CDS-S-ischiensis_contig9:3319807..33199571695741062.3100836-CDS-S-ischiensis_contig9:3319807..3319957Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3319808..3319957 +
1622817369.48435-CDS-S-ischiensis_contig9:3320476..33208881622817369.48435-CDS-S-ischiensis_contig9:3320476..3320888Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3320477..3320888 +
1695741062.3222463-CDS-S-ischiensis_contig9:3320476..33208881695741062.3222463-CDS-S-ischiensis_contig9:3320476..3320888Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3320477..3320888 +
1622817369.4960454-CDS-S-ischiensis_contig9:3321775..33219231622817369.4960454-CDS-S-ischiensis_contig9:3321775..3321923Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3321776..3321923 +
1695741062.3338318-CDS-S-ischiensis_contig9:3321775..33219231695741062.3338318-CDS-S-ischiensis_contig9:3321775..3321923Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3321776..3321923 +
1622817369.5110488-CDS-S-ischiensis_contig9:3322448..33225331622817369.5110488-CDS-S-ischiensis_contig9:3322448..3322533Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3322449..3322533 +
1695741062.3443732-CDS-S-ischiensis_contig9:3322448..33225331695741062.3443732-CDS-S-ischiensis_contig9:3322448..3322533Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3322449..3322533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20796.1

>prot_S-ischiensis_contig9.20796.1 ID=prot_S-ischiensis_contig9.20796.1|Name=mRNA_S-ischiensis_contig9.20796.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=265bp
MLRRERPCYRPRGGLKKCFFVGREAWVFRRGSGAPGRGFHQTAQTTSPFQ
ETSSCVGTPMSPTSTWSMSSGSSNDVPTVQDTCEGATPVPDSMQSRTARI
SASNRFMIRFFEGEFSPVGSRARLASLAKCWGQWSGLLAKQFATGVLTAP
AAPCFPSRPRRAIRRRTSGNMWTSLGRCRAHSQPTRWALPYPLSTHCTVA
DEALGKRGLFVPAFAGGRRGPSSPLDPGSRAAPSPPSASGFGTRNMAGGS
ARPPTAPARCTCCRR
back to top

mRNA from alignment at S-ischiensis_contig9:3319533..3322533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20796.1 ID=mRNA_S-ischiensis_contig9.20796.1|Name=mRNA_S-ischiensis_contig9.20796.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3001bp|location=Sequence derived from alignment at S-ischiensis_contig9:3319533..3322533+ (Schizocladia ischiensis KU_0333)
GCTGTGCCCAAGCCCCAGGGCATGACCACGAGTCCCCAGCATGCTTGGCG
GCACTATGACCCGCGGCAGGGCGGCTGTGCCTCTGACTGGGTCGAGAGAA
CCTTCGCTCGTCGCCGTACGTCTTCGCTGGTCGACGAACGAGCCACCCAG
CGAAACAGAGAGTTGAGCCGCGGAAAGAACGGCAGCCATGCGATGGTTCT
CAGCTGTTCCACATCCCCTCCACCGTCCTCTCTCGTTTGTTCTGACGCTC
GCGAGCGAGGCTTGTTTTCTTCGGCATGCTTCGCCGCGAGCGCCCGTGCT
ATCGACCGCGGGGGGGCCTGAAGAAGTGTTTTTTTGTGGGGCGTGAAGCA
TGGGTCTTCCGACGTGGCTCTGGAGCCCCCGGAAGAGGTTTCCATCAGAC
CGCGCAGACAACTTCGCCTTTCCAGGTAAGTCTCGTGAGACCGCACTGTC
GTGAATTGCCGCGGCCGCCTGTCGCCCCAAACTGCAACAGCGTCGAACCT
ACAGTTGCGAGGCGGCCCGGGGCCATGTACTTCGAAGATAGTAACGGACT
CAGGCCCACAGTGCCTTCCCAAACTGATTTCGGCGAAGGGCTAGCCAGTT
TGGCCAGAGGAGGAGCTGTCACCATTGCCATACTGGCGGGCACACTGCAG
GGACTAGTGCTTCAGGTCTCGCGGGATTGTCGGCCCACCAGGCCCTACCG
GACGGTGAGGCTTGCTCAGCGCTTTGCTCACTTGCATTCGACGCTTTGAG
CAAAGTTTGAGCTGTCTTTGTGGTCGGCATGGGCAGAAAACGCGCTGCAA
CACCCACCCCCTCCACCTGCCTTGGTGTCTAGGTCTTGTTCACACTGCCT
CTCTCTCTCCCCCCCTCCCTCCACCCTCCTCCTCCGCCCTCCCCCGCTCC
CTCCCTCTCTCCCTCTCTCCTGCCATCGCCCATTCAACCCACAGGAGACG
TCTTCTTGCGTTGGGACACCGATGAGCCCTACAAGCACCTGGAGCATGTC
CTCTGGGTCAAGCAACGACGTGCCCACCGTTCAGGACACGTGCGAGGGCG
CTACCCCTGTCCCAGATTCGATGCAGTCTCGGACTGCCAGGATATCTGCC
AGCAACAGATTCATGATCCGGTTCTTTGAGGGCGAGTTCTCCCCCGTGGG
CAGCCGAGCTCGCCTGGCCTCGCTGGCCAAGTGCTGGGGCCAGTGGAGTG
GCCTTCTCGCGAAGCAGTTTGCCACCGGGGTTCTCACTGCCCCTGCCGCC
CCCTGTTTCCCCTCAAGGCCCCGGCGGGCCATCCGGCGGAGGACAAGTGG
CAATATGTGGACGTCCTTGGGTCGGTGCAGGGCCCATTCACAACCAACCA
GGTGGGTGGGGCCCCCTGCGTGTATGTGATTGGCGGGCGCATTCTAACCG
CCCGCCCGTGCGCAGACAAAAAGCTCGTTTCGCGAACCGGACGCGCCATG
CGGGCCAAGCCCGATTCGATAGACTGTCGGGCCTGTTGTCTGACCGCCTC
CAGCGCCCTGACAAGCCTCTGCCCCAATTTTTGTGGCTTTCCCGTTCTTT
TCTCTTCTTTTTTCTCCCCCCCTCTCTTCCCCCTTTTGTTTTTCCGCCCC
GTCCCCCACCGGCCTTGTTCTTAGTTTTCTTCATGTGATAGTCACTCATA
CTACGTATAATAACATTCAATTCTGAAGTGAAACAACTACTAATACGAGA
GCAGTCAATCGCACACATGTGCGATTGTACCTCGTTTCGAGTACAATTTG
TATGCATCACCACCGCACACAAAGCACGCACACCGCTCCGCTCCTCTGAC
AACCCCCCCCCACGCACAGGTGCACGTGAGCACGCGGTCACACACACACA
CACCCGCAGCACAGCTCCTCTTTTTTGTGTAGGAAGAGAGAAGCGAGTGG
GAAATAGAGGTGATCCTACTTTTGCGACTTCCGGGCCCCAAGACGGAAGC
CCTTCACTCGCAGGGCAAAAAATCAAGAACGAAACGGGCGGTGGGGGGAA
AGAAAGATACCGCAGGGAAAGGGGAAGGGGGCAGGGGGAAAGAACTCCAG
GTCTCTTGTGCCACGAAGCGGGACTTGTTTATTGGGTTTTATAGTCACTA
ACACGTAGTACTCGTATGAGAACACTCACCTCAATTTTCCACTTGCTTCT
TTTCTTTCCACACAAGAAAACTCAATCCTTAAATGGGATAGCCGTTAAAC
TGCTGCACTCGAGTAGAGTCAAAAGCAAAAGCCCACATCTGCCCCTTGCC
GTACCCGCTGTCCACGCACTGCACCGTTGCAGATGAGGCACTGGGCAAGC
GCGGGCTATTTGTCCCCGCGTTTGCAGGGGGCAGAAGGGGGCCTTCCAGT
CCCTTGGATCCTGGTTCCCGGGCAGCCCCTTCACCACCCAGGTGTGACCC
AAGGTTTTCGATATCGTTCGATGACCAGCTCGTGCAATTGTTCCGCTTCA
AAAAATGACACTTGGCCCGCGTTGGACAGGATTCCATTTTGTCTGTTTTG
TTAAGCCTCTGCATGTCTTGATCATGGCAGTTTGTTGCTGGTCGGACCAC
AGTTCCTACCTGTGCGCTCCCCAGTATGTAAAATCCTCCTCCCCCTCCTC
CTTTTCTCCCCTTCCCCACACAAACTTGCCCTGGCGAGCTGTAAGAAAGG
GCGACTGCAGAGGTCTTCTAGCGATGTGGCCCGCACCTCGCCCAGTGCTG
TTCCTGTTCACGCAAAACGTACGAGCAGCGCAAAAGAATGCTTTGCAGTC
CATCTTGCTCCGCCGTGTGCACGCCCTCCTATAGCCCGCACCACCTGCCC
GGGATACTGCAGCTGCGCGGCACGCGCTGCACTTCCAAAACATGACTAAC
CCCCCCCCCCCCCCCCTTGCCACGTCCTTGCACCTGAACGTGGTGGGGTT
GCTCTTCGCTCGGAAGTGCCTCTGGGTTTGGCACCAGGAATATGGCCGGT
GGCAGCGCCCGCCCCCCAACTGCCCCTGCCCGCTGCACCTGCTGCAGGCG
C
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:3319533..3322533+

>mRNA_S-ischiensis_contig9.20796.1 ID=mRNA_S-ischiensis_contig9.20796.1|Name=mRNA_S-ischiensis_contig9.20796.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1590bp|location=Sequence derived from alignment at S-ischiensis_contig9:3319533..3322533+ (Schizocladia ischiensis KU_0333)
ATGCTTCGCCGCGAGCGCCCGTGCTATCGACCGCGGGGGGGCCTGAAGAA
GTGTTTTTTTGTGGGGCGTGAAGCATGGGTCTTCCGACGTGGCTCTGGAG
CCCCCGGAAGAGGTTTCCATCAGACCGCGCAGACAACTTCGCCTTTCCAG
ATGCTTCGCCGCGAGCGCCCGTGCTATCGACCGCGGGGGGGCCTGAAGAA
GTGTTTTTTTGTGGGGCGTGAAGCATGGGTCTTCCGACGTGGCTCTGGAG
CCCCCGGAAGAGGTTTCCATCAGACCGCGCAGACAACTTCGCCTTTCCAG
GAGACGTCTTCTTGCGTTGGGACACCGATGAGCCCTACAAGCACCTGGAG
CATGTCCTCTGGGTCAAGCAACGACGTGCCCACCGTTCAGGACACGTGCG
AGGGCGCTACCCCTGTCCCAGATTCGATGCAGTCTCGGACTGCCAGGATA
TCTGCCAGCAACAGATTCATGATCCGGTTCTTTGAGGGCGAGTTCTCCCC
CGTGGGCAGCCGAGCTCGCCTGGCCTCGCTGGCCAAGTGCTGGGGCCAGT
GGAGTGGCCTTCTCGCGAAGCAGTTTGCCACCGGGGTTCTCACTGCCCCT
GCCGCCCCCTGTTTCCCCTCAAGGCCCCGGCGGGCCATCCGGCGGAGGAC
AAGTGGCAATATGTGGACGTCCTTGGGTCGGTGCAGGGCCCATTCACAAC
CAACCAGGTGGGGAGACGTCTTCTTGCGTTGGGACACCGATGAGCCCTAC
AAGCACCTGGAGCATGTCCTCTGGGTCAAGCAACGACGTGCCCACCGTTC
AGGACACGTGCGAGGGCGCTACCCCTGTCCCAGATTCGATGCAGTCTCGG
ACTGCCAGGATATCTGCCAGCAACAGATTCATGATCCGGTTCTTTGAGGG
CGAGTTCTCCCCCGTGGGCAGCCGAGCTCGCCTGGCCTCGCTGGCCAAGT
GCTGGGGCCAGTGGAGTGGCCTTCTCGCGAAGCAGTTTGCCACCGGGGTT
CTCACTGCCCCTGCCGCCCCCTGTTTCCCCTCAAGGCCCCGGCGGGCCAT
CCGGCGGAGGACAAGTGGCAATATGTGGACGTCCTTGGGTCGGTGCAGGG
CCCATTCACAACCAACCAGGTGGGCCTTGCCGTACCCGCTGTCCACGCAC
TGCACCGTTGCAGATGAGGCACTGGGCAAGCGCGGGCTATTTGTCCCCGC
GTTTGCAGGGGGCAGAAGGGGGCCTTCCAGTCCCTTGGATCCTGGTTCCC
GGGCAGCCCCTTCACCACCCAGCCTTGCCGTACCCGCTGTCCACGCACTG
CACCGTTGCAGATGAGGCACTGGGCAAGCGCGGGCTATTTGTCCCCGCGT
TTGCAGGGGGCAGAAGGGGGCCTTCCAGTCCCTTGGATCCTGGTTCCCGG
GCAGCCCCTTCACCACCCAGTGCCTCTGGGTTTGGCACCAGGAATATGGC
CGGTGGCAGCGCCCGCCCCCCAACTGCCCCTGCCCGCTGCACCTGCTGCA
GGCGCTGCCTCTGGGTTTGGCACCAGGAATATGGCCGGTGGCAGCGCCCG
CCCCCCAACTGCCCCTGCCCGCTGCACCTGCTGCAGGCGC
back to top