mRNA_S-ischiensis_contig9.20790.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20790.1
Unique NamemRNA_S-ischiensis_contig9.20790.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20790.1 vs. uniprot
Match: D8LLN6_ECTSI (Oxidoreductase, short chain dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLN6_ECTSI)

HSP 1 Score: 320 bits (821), Expect = 1.650e-97
Identity = 158/258 (61.24%), Postives = 197/258 (76.36%), Query Frame = 1 
Query:  238 LSGKALVVGGNRGLGLAVVQNLVGQGVEVIATARKSNPEMEAAGCKIVAGIDVAEEDSGQKLVEGVTGHLGEGCTLDYLIVIAGYFTTETFDELNWAENRKMYEICALGPLRVTQALVKAGLIKEGGKVGLITSEGGSISLRSEAEGGGNYGHHMSKCAQNMMGKLLAWDLKPLGIGVVMLHPGFLKTSMTGHYAHLYEELGAVTPEEAVPHILKAVEDVKLETTGKFIAPMGSSGLGLGVWALPDPDSFGPFSELPW 1011
            L G  LV+GGNRGLGL VV++L  +   V+AT R +N ++EA G  ++ GIDV+++DSG KLVE V   LGEG TLDY+I  AG    +TF++  +    KMYE+C LGPLRV QALV +GL+++G  +G+ITSEGGS+ LR+E EGG NYGHHMSKCAQNMMGKL A D+K  G+ +V +HPGF+KTSMT  YA  Y+ELGA+ PEEA P I+KAVED+ LETTGKFIAP GS  LGLGV+AL DP+S+GPF ELPW
Sbjct:   83 LPGNCLVIGGNRGLGLEVVRHLKKRESTVLATTRTTNADLEAVGVSVLEGIDVSDKDSGTKLVEAVQKELGEGGTLDYVICNAGILIPDTFEDPEFDAAVKMYEVCVLGPLRVLQALVVSGLLRKGSNIGMITSEGGSVGLRTEVEGGNNYGHHMSKCAQNMMGKLFALDVKTRGVAIVNIHPGFMKTSMTEIYADKYDELGAIGPEEAAPGIVKAVEDLTLETTGKFIAPQGSKSLGLGVYALEDPESYGPFCELPW 340
[Close]
BLAST of mRNA_S-ischiensis_contig9.20790.1 vs. uniprot
Match: A0A7S1ESF3_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ESF3_9RHOD)

HSP 1 Score: 247 bits (630), Expect = 2.840e-70
Identity = 128/260 (49.23%), Postives = 177/260 (68.08%), Query Frame = 1 
Query:  244 GKALVVGGNRGLGLAVVQNLVGQGVEVIATARKSNP--EMEAAGCK-IVAGIDVAEEDSGQKLVEGVTGHLGEGCTLDYLIVIAGYFTTETFDELNWAENRKMYEICALGPLRVTQALVKAGLIKEGGKVGLITSEGGSISLRSEAEGGGNYGHHMSKCAQNMMGKLLAWDLKPLGIGVVMLHPGFLKTSMTGH-YAHLYEELGAVTPEEAVPHILKAVEDVKLETTGKFIAPMGSSGLGLGVWALPDPDSFGPFSELPW 1011
            G  LV+GG+RGLGL +V+ L   G +VIA  RK  P  E+EA     ++ G D   ++  + +  G+T        +D +++++GYFTTET DE N  E  KM++ICA+ P ++  ++ K        K+G ITSEGGSI LR+E EGG NYGHHMSK + NM+GKLLA+DLKP GI +VM+HPGFL+T MT   Y+HL++ELGAVT   AVP+IL+ V D+ LE+TG+F+A MG+ GLGLG++A+ DP    P ++LPW
Sbjct:   83 GTTLVIGGDRGLGLEMVKALTNNGCKVIAAIRKDKPSAELEAVNPHTVITGADFMSDNVDEIICNGLTE------PVDTVMMVSGYFTTETLDEFNREEEVKMFKICAISPGQILTSMHKNKKFAPNAKIGFITSEGGSIGLRTEKEGGLNYGHHMSKASSNMLGKLLAYDLKPFGISMVMIHPGFLRTDMTADKYSHLWDELGAVTAATAVPYILQCVADLSLESTGRFVAAMGAHGLGLGIYAIEDPSKLVPGADLPW 336
[Close]
BLAST of mRNA_S-ischiensis_contig9.20790.1 vs. uniprot
Match: A0A5J4YY46_PORPP (C-factor n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YY46_PORPP)

HSP 1 Score: 223 bits (567), Expect = 1.170e-61
Identity = 121/265 (45.66%), Postives = 171/265 (64.53%), Query Frame = 1 
Query:  232 AALSGKALVVGGNRGLGLAVVQNLVGQGVEVIATARKSNP-----EMEAAGCKIVAGIDVAEEDSGQKLVEGVTGHLGEGCTLDYLIVIAGYFTTETFDELNWAENRKMYEICALGPLRVTQALVKAGLIKEGGKVGLITSEGGSISLRSEAEGGGNYGHHMSKCAQNMMGKLLAWDLKPLGIGVVMLHPGFLKTSMTGHYAHLYEELGAVTPEEAVPHILKAVEDVKLETTGKFIAPMGSSGLGLGVWALPDPDSFGPFSELPW 1011
            AA  GK LVVGG+ G GL  V+ LV  GV VIA  RKS P     E+  A C  + G++  E++  + L +G    LG+   +D +++++GYFT E   E+  +E  KMY+ICA+ P ++  ++ ++G      ++G+ITSEGGSI LR+E EGG NY HH SK A NM+ +LL +DLKP GI +V +HPGF+KT MT  Y+H YEE GAV    AVP +L+ V ++ L+ TG+F+A MG+ GLGLG  A+ +P+   P  +LPW
Sbjct:   67 AATFGKTLVVGGDSGQGLEFVRQLVAAGVHVIAAFRKSAPSDQLKEVNPAQC--IPGVNFLEDNVDKVLNDG----LGD-TKVDTMLMVSGYFTEEGALEVVRSEEEKMYKICAISPTQIITSMFQSGKFASNARIGMITSEGGSIGLRTEQEGGKNYAHHGSKAASNMVVRLLGYDLKPHGISIVGMHPGFIKTPMTEKYSHFYEEFGAVEASVAVPFMLQCVAELDLDHTGRFVAAMGAYGLGLGALAIAEPEKLKPGDDLPW 324
[Close]
BLAST of mRNA_S-ischiensis_contig9.20790.1 vs. uniprot
Match: A0A1X6NYS2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYS2_PORUM)

HSP 1 Score: 217 bits (553), Expect = 1.670e-60
Identity = 117/259 (45.17%), Postives = 161/259 (62.16%), Query Frame = 1 
Query:  238 LSGKALVVGGNRGLGLAVVQNLVGQGVEVIATARKS-NPEMEAAGCKIVAGIDVAEEDSGQKLVEGVTGHLGEGCTLDYLIVIAGYFTTETFDELNWAENRKMYEICALGPLRVTQALVKAGLIKEGGKVGLITSEGGSISLRSEAEGGGNYGHHMSKCAQNMMGKLLAWDLKPLGIGVVMLHPGFLKTSMTGHYAHLYEELGAVTPEEAVPHILKAVEDVKLETTGKFIAPMGSSGLGLGVWALPDPDSFGPFSELPW 1011
            L   AL++G   GLGL + + L   G  +  T R + +P +E     I+ GIDVA  D   KLVE +   LG    +  L+ +AG    ++  +L     R+M ++CALGPLR+  ALV AGL+  G KVGL+TSEGGSI LR+  EGGGNYGHH SK A+NM GK+L+ DL   G+ +V +HPGF+K+SMT  +   Y+ELGAV P  A   +++ ++ +  + TG+FI P+GS  LG GVW L + +  GP SELPW
Sbjct:   10 LGDHALIIGAGSGLGLELAKVLAPTGTALAVTVRNTVDPALEELDASIIRGIDVAT-DGPDKLVEELAA-LG-WVNVSTLVCVAGILKPDSLGDLQPDNWRQMMDVCALGPLRIVDALVTAGLLTAGSKVGLVTSEGGSIGLRTPKEGGGNYGHHCSKAAENMAGKILSLDLAERGMPLVCIHPGFMKSSMTEPFKEKYDELGAVEPHVAAKGVVECMKQLNKDNTGRFIQPLGSENLGFGVWGLEEAEKKGPMSELPW 265
[Close]
BLAST of mRNA_S-ischiensis_contig9.20790.1 vs. uniprot
Match: A0A507CIT0_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CIT0_9FUNG)

HSP 1 Score: 201 bits (511), Expect = 6.170e-55
Identity = 124/267 (46.44%), Postives = 166/267 (62.17%), Query Frame = 1 
Query:  235 ALSGKALVVGGNRGLGLAVVQNLVGQGVEVIATARKSNPEMEAAGCKIVAGIDVAEEDSGQKLVEGVTGHLGEGCTLDYLIVIAGYFTTETFDELNWAENRKMYEICALGPLRVTQALVKAGLIKEGGKVGLITSEGGSISLRSEAEGGGNYGHHMSKCAQNMMGKLLAWDLKPLGIGVVMLHPGFLKTSMT---GHYAHLYEELGAVTPEEAVPHILKAVEDVKLETTGKFIAPMGSSGLG----LG-VWALPDPDSFGPFSELPW 1011
            A+     ++G + GLGLA+ ++   +G  V  T R    +++  G    + +D +E+ S  +L       + E   +  L V+AGYF+ E+FDE++W E  KMY+  A+GPL VT+ LVK G ++ G KV  ITSE GSI LR+E EGGG YGHH SK AQNM GKLL++DLKP GI +VM+HPGF+KT +T   G   H YE+ GA+ PEEAV  +LK V ++ LE TGKFIAP+G  G+G    LG V  LP P       ELPW
Sbjct:    2 AIEKSVAIIGASSGLGLALAKHFASKGTRVYGTTRDGK-DIQVEGV-FTSKLDTSEKRSIDEL------KIPE---IQELYVVAGYFSKESFDEMSWEEELKMYKTGAMGPLFVTRHLVKQGSLRHGSKVIWITSEAGSIGLRTEKEGGGLYGHHASKTAQNMNGKLLSFDLKPKGISIVMIHPGFMKTGLTKSVGFDKH-YEKGGAIDPEEAVEPLLKVVANLTLENTGKFIAPVGPKGVGNAHVLGPVEKLPAP------LELPW 250
[Close]
BLAST of mRNA_S-ischiensis_contig9.20790.1 vs. uniprot
Match: A0A0F7SXX7_PHARH (Short chain dehydrogenase reductase family superfamily n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SXX7_PHARH)

HSP 1 Score: 202 bits (513), Expect = 1.010e-54
Identity = 124/263 (47.15%), Postives = 161/263 (61.22%), Query Frame = 1 
Query:  247 KALVVGGNRGLGLAVVQNLVGQGVEVIATARKSNPEMEAA---GCKIVAGIDVAEEDSGQKLVEGVTGHLGEGCTLDYLIVIAGYFTTETFDELNWAENRKMYEICALGPLRVTQALVKAGLIKEGGKVGLITSEGGSISLRSEAEGGGNYGHHMSKCAQNMMGKLLAWDLKPLGIGVVMLHPGFLKTSMTGHYAHLYEELGAVTPEEAVPHILKAVEDVKLETTGKFIAPMGSSGLG-----LGVWALPDPDSFGPFSELPW 1011
            KAL+VG NRGLGLA+ + L  +G  V AT R  +P  E     G  ++ GIDV E  +G+ LVE +     EG  LD  +++AG    ETF E ++     MY+ICA+GP+ +T AL K+       K+ L+TSEGGSI+LR+E EGGG +GHH SK A NM+G LL++DLKP G+ VVM+HPGFL T MTG     Y++ GAV PE A P  L  V+ V L+ TG+F APMG  G+G     LG   LP P       +LPW
Sbjct:   40 KALIVGANRGLGLALTKELHKRGTTVYATTR--SPAKEGTFPDGVHVIEGIDVGEPGAGKTLVEKL-----EGAKLDLTVIVAGLLKEETFKEPDFQAEMDMYKICAVGPVFITSALSKSSFASNA-KLILLTSEGGSITLRTEKEGGGMFGHHGSKAAANMVGHLLSYDLKPKGVTVVMIHPGFLITDMTGGMKDHYKKGGAVKPEVAAPIFLDFVDTVTLKHTGQFWAPMGPKGIGNAEEVLGK-DLPTP------LQLPW 287
[Close]
BLAST of mRNA_S-ischiensis_contig9.20790.1 vs. uniprot
Match: A0A7S3YUQ5_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YUQ5_9EUKA)

HSP 1 Score: 201 bits (510), Expect = 2.580e-54
Identity = 118/234 (50.43%), Postives = 151/234 (64.53%), Query Frame = 1 
Query:  238 LSGKA-LVVGGNRGLGLAVVQNLVGQGVEVIATARKSNPEMEAAGCKIVAGIDVAEEDSGQKLVEGVTGHLGEGCTLDYLIVIAGYFTT--ETFDELNWAENRKMYEICALGPLRVTQALVKAGLIKEGGKVGLITSEGGSISLRSEAEGGG--NYGHHMSKCAQNMMGKLLAWDLKPLGIGVVMLHPGFLKTSMTGHYAHLYEELGAVTPEEAVPHILKAVEDVKLETTGKFI 924
            L+GK  LV G NRGLGLA+ + LV QG +V+AT R + PE+E    K+V GIDV +   G KLV+ + G      ++D +I  AGYF T  ET D  N+AE  KM +ICA+G LRVT A+VK GL+  G KV LITS+GGSI+ R     GG  +YGHHMSK A NM+GKLL+ +LKP GI V +LHPGF +T MT  Y H++E  GAV        +   +  V ++TTGKFI
Sbjct:   50 LAGKVVLVTGSNRGLGLAITKELVAQGAKVVATCRTTAPEVEGLH-KVVKGIDVTDNKCGDKLVQALGGE-----SIDIVINNAGYFMTDPETIDNPNFAEELKMIDICAVGILRVTSAIVKNGLMASGSKVVLITSQGGSIAWRDVQNAGGPFDYGHHMSKAAANMLGKLLSIELKPKGIMVSILHPGFNRTDMTSKYEHIWEVEGAVDASVGAKRVCHEINLVTMDTTGKFI 277
[Close]
BLAST of mRNA_S-ischiensis_contig9.20790.1 vs. uniprot
Match: A0A0S6XBS5_BLOB1 (Uncharacterized protein n=1 Tax=Fungal sp. (strain No.11243) TaxID=1603295 RepID=A0A0S6XBS5_BLOB1)

HSP 1 Score: 198 bits (503), Expect = 1.040e-53
Identity = 108/256 (42.19%), Postives = 151/256 (58.98%), Query Frame = 1 
Query:  253 LVVGGNRGLGLAVVQNLVGQG-VEVIATARKSNPEMEAAGCKIVAGIDVAEEDSGQKLVEGVTGHLGEGCTLDYLIVIAGYFTTETFDELNWAENRKMYEICALGPLRVTQALVKAGLIKEGGKVGLITSEGGSISLRSEAEGGGNYGHHMSKCAQNMMGKLLAWDLKPLGIGVVMLHPGFLKTSMTGH--YAHLYEELGAVTPEEAVPHILKAVEDVKLETTGKFIAPMGSSGLGLGVWALPDPDSFGPFSELPW 1011
            L+VG  RGLG  + +    Q    V  TARKS PE  +   K ++G+D+ EE S + L++G+        TLD +I+ AGYF  E+FDE +W++   MY   A+ P+ + Q L KAG +K+G KV LITSE GSI LR E+EGGGNYGHH SK A NM+GKLL+ DLK  G+ V +LHPGF+++ MT    +   +++ GAV P  A   +++ +    L  TG++ AP G   +G     L   D      +LPW
Sbjct:    5 LIVGATRGLGFELAKQYSQQSNTTVYGTARKSTPEDASTDIKWISGVDLMEESSSKTLIDGLHKQGSATTTLDVVIITAGYFGKESFDEPSWSKQVTMYTTSAIAPVFIVQGLFKAGALKKGAKVFLITSESGSIGLRHESEGGGNYGHHASKAASNMVGKLLSLDLKEHGVAVGLLHPGFMRSEMTKSVGFDKFWDDGGAVEPSVAAKSLIEFISTFDLSKTGEYWAPRGPGDIGTAEDTLGSKDKLPTPLQLPW 260
[Close]
BLAST of mRNA_S-ischiensis_contig9.20790.1 vs. uniprot
Match: A0A1V8TMA4_9PEZI (Uncharacterized protein n=3 Tax=Rachicladosporium TaxID=470018 RepID=A0A1V8TMA4_9PEZI)

HSP 1 Score: 197 bits (500), Expect = 2.280e-53
Identity = 110/256 (42.97%), Postives = 156/256 (60.94%), Query Frame = 1 
Query:  253 LVVGGNRGLGLAVVQNLVGQGVEVIATARKSNPEMEAA-GCKIVAGIDVAEEDSGQKLVEGVTGHLGEGCTLDYLIVIAGYFTTETFDELNWAENRKMYEICALGPLRVTQALVKAGLIKEGGKVGLITSEGGSISLRSEAEGGGNYGHHMSKCAQNMMGKLLAWDLKPLGIGVVMLHPGFLKTSMTGH--YAHLYEELGAVTPEEAVPHILKAVEDVKLETTGKFIAPMGSSGLGLGVWALPDPDSFGPFSELPW 1011
            L+VG  RGLG  +      +   V  T+R      +A    + + G+DV EE +G+ +V+G+ GH      +D LI+ AGYF  E+FDE ++A   +MY+I A+GP+ +T ALVKA  +K+G KV +I+SE GSI LR E+EGGGN+GHH SK A NM+GKLL++DLK  GI V M HPGF++T MT    +   ++  GAVTP+ A   ++  V++  +E TG+F AP G   +G     L DP       +LPW
Sbjct:    5 LIVGATRGLGQELANQYARREYCVYGTSRSDTKPKDAHHDIRWLHGVDVGEESAGEAIVKGLKGH-----KIDVLILAAGYFGKESFDEPDYAAELEMYKISAIGPVFITHALVKADALKQGSKVIIISSEAGSIGLRHESEGGGNFGHHASKAASNMVGKLLSFDLKDKGIAVGMAHPGFMRTEMTKGVGFDEFWDSGGAVTPDVAAKSLVDWVDEFGIERTGEFWAPRGPGDIGTAEATLGDPKKLPTPLQLPW 255
[Close]
BLAST of mRNA_S-ischiensis_contig9.20790.1 vs. uniprot
Match: A0A1E3I5S4_9TREE (Cytoplasmic protein n=2 Tax=Cryptococcus depauperatus TaxID=5208 RepID=A0A1E3I5S4_9TREE)

HSP 1 Score: 196 bits (498), Expect = 4.970e-53
Identity = 107/260 (41.15%), Postives = 161/260 (61.92%), Query Frame = 1 
Query:  253 LVVGGNRGLGLAVVQNLVGQ--GVEVIATARKS-NPEMEAAGCKIVAGIDVAEEDSGQKLVEGVTGHLGEGCTLDYLIVIAGYFTTETFDELNWAENRKMYEICALGPLRVTQALVKAGLIKEGGKVGLITSEGGSISLRSEAEGGGNYGHHMSKCAQNMMGKLLAWDLKPLGIGVVMLHPGFLKTSMT--GHYAHLYEELGAVTPEEAVPHILKAVEDVKLETTGKFIAPMGSSGLGLGVWALPDP--DSFGPFSELPW 1011
            LVVG +RGLGL +V++   Q     V AT R S + ++   G  I+  +D + ED G+K+V+G+     +G  +D ++ +AG    E  +EL+W +   MY +C++ P+ V QAL+ A  +    ++ L+TSE GSI+LR+E+EGGG +GHH SK A+NM+G LL++DLK  G+ + M+HPGFLKT MT        Y+++GAVTP+EA     + V  + L+ TGKF AP+G+ G+G     L +   D  GP  E+PW
Sbjct:    7 LVVGASRGLGLVLVKHYSSQLTPANVFATVRGSASADVFPEGVNIIEDVDCSREDCGKKIVDGL-----QGAAVDIVVYVAGVLKPEKLEELSWKDEVLMYTVCSIAPVFVVQALLMASSLAPDARIALVTSEAGSITLRTESEGGGAFGHHGSKAAENMVGHLLSYDLKERGVSIAMIHPGFLKTDMTKDAGMEQFYDKMGAVTPDEAAKPFAEFVNKLNLDMTGKFWAPLGAKGIGNAEEVLGEEVLDKSGPL-EIPW 260
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLN6_ECTSI1.650e-9761.24Oxidoreductase, short chain dehydrogenase n=2 Tax=... [more]
A0A7S1ESF3_9RHOD2.840e-7049.23Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4YY46_PORPP1.170e-6145.66C-factor n=1 Tax=Porphyridium purpureum TaxID=3568... [more]
A0A1X6NYS2_PORUM1.670e-6045.17Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A507CIT0_9FUNG6.170e-5546.44Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A0F7SXX7_PHARH1.010e-5447.15Short chain dehydrogenase reductase family superfa... [more]
A0A7S3YUQ5_9EUKA2.580e-5450.43Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A0S6XBS5_BLOB11.040e-5342.19Uncharacterized protein n=1 Tax=Fungal sp. (strain... [more]
A0A1V8TMA4_9PEZI2.280e-5342.97Uncharacterized protein n=3 Tax=Rachicladosporium ... [more]
A0A1E3I5S4_9TREE4.970e-5341.15Cytoplasmic protein n=2 Tax=Cryptococcus depaupera... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3247055..3257712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score323.6
Seed ortholog evalue1e-85
Seed eggNOG ortholog2880.D8LLN6
EggNOG free text desc.cellular detoxification of aldehyde
EggNOG OGsCOG1028@1,KOG1611@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Exons8
Model size3031
Cds size930
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20790.1prot_S-ischiensis_contig9.20790.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3247139..3255695 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817402.2819362-UTR-S-ischiensis_contig9:3247054..32471381622817402.2819362-UTR-S-ischiensis_contig9:3247054..3247138Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3247055..3247138 +
1695741087.6881242-UTR-S-ischiensis_contig9:3247054..32471381695741087.6881242-UTR-S-ischiensis_contig9:3247054..3247138Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3247055..3247138 +
1622817402.3932273-UTR-S-ischiensis_contig9:3255695..32577121622817402.3932273-UTR-S-ischiensis_contig9:3255695..3257712Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3255696..3257712 +
1695741087.813425-UTR-S-ischiensis_contig9:3255695..32577121695741087.813425-UTR-S-ischiensis_contig9:3255695..3257712Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3255696..3257712 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817402.2943375-CDS-S-ischiensis_contig9:3247138..32472781622817402.2943375-CDS-S-ischiensis_contig9:3247138..3247278Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3247139..3247278 +
1695741087.7019615-CDS-S-ischiensis_contig9:3247138..32472781695741087.7019615-CDS-S-ischiensis_contig9:3247138..3247278Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3247139..3247278 +
1622817402.307867-CDS-S-ischiensis_contig9:3247472..32476081622817402.307867-CDS-S-ischiensis_contig9:3247472..3247608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3247473..3247608 +
1695741087.7171783-CDS-S-ischiensis_contig9:3247472..32476081695741087.7171783-CDS-S-ischiensis_contig9:3247472..3247608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3247473..3247608 +
1622817402.321434-CDS-S-ischiensis_contig9:3248708..32488361622817402.321434-CDS-S-ischiensis_contig9:3248708..3248836Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3248709..3248836 +
1695741087.73265-CDS-S-ischiensis_contig9:3248708..32488361695741087.73265-CDS-S-ischiensis_contig9:3248708..3248836Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3248709..3248836 +
1622817402.3323307-CDS-S-ischiensis_contig9:3250056..32501171622817402.3323307-CDS-S-ischiensis_contig9:3250056..3250117Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3250057..3250117 +
1695741087.7472587-CDS-S-ischiensis_contig9:3250056..32501171695741087.7472587-CDS-S-ischiensis_contig9:3250056..3250117Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3250057..3250117 +
1622817402.344953-CDS-S-ischiensis_contig9:3251483..32516261622817402.344953-CDS-S-ischiensis_contig9:3251483..3251626Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3251484..3251626 +
1695741087.759615-CDS-S-ischiensis_contig9:3251483..32516261695741087.759615-CDS-S-ischiensis_contig9:3251483..3251626Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3251484..3251626 +
1622817402.3584163-CDS-S-ischiensis_contig9:3252759..32528541622817402.3584163-CDS-S-ischiensis_contig9:3252759..3252854Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3252760..3252854 +
1695741087.7744458-CDS-S-ischiensis_contig9:3252759..32528541695741087.7744458-CDS-S-ischiensis_contig9:3252759..3252854Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3252760..3252854 +
1622817402.3709471-CDS-S-ischiensis_contig9:3254265..32543601622817402.3709471-CDS-S-ischiensis_contig9:3254265..3254360Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3254266..3254360 +
1695741087.786421-CDS-S-ischiensis_contig9:3254265..32543601695741087.786421-CDS-S-ischiensis_contig9:3254265..3254360Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3254266..3254360 +
1622817402.381801-CDS-S-ischiensis_contig9:3255563..32556951622817402.381801-CDS-S-ischiensis_contig9:3255563..3255695Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3255564..3255695 +
1695741087.801344-CDS-S-ischiensis_contig9:3255563..32556951695741087.801344-CDS-S-ischiensis_contig9:3255563..3255695Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3255564..3255695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20790.1

>prot_S-ischiensis_contig9.20790.1 ID=prot_S-ischiensis_contig9.20790.1|Name=mRNA_S-ischiensis_contig9.20790.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=310bp
MHSPWGFRLIFALALATTVHSFVISSGAVARATISRPRHAAAHAPITMDA
ALSGKALVVGGNRGLGLAVVQNLVGQGVEVIATARKSNPEMEAAGCKIVA
GIDVAEEDSGQKLVEGVTGHLGEGCTLDYLIVIAGYFTTETFDELNWAEN
RKMYEICALGPLRVTQALVKAGLIKEGGKVGLITSEGGSISLRSEAEGGG
NYGHHMSKCAQNMMGKLLAWDLKPLGIGVVMLHPGFLKTSMTGHYAHLYE
ELGAVTPEEAVPHILKAVEDVKLETTGKFIAPMGSSGLGLGVWALPDPDS
FGPFSELPW*
back to top

mRNA from alignment at S-ischiensis_contig9:3247055..3257712+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20790.1 ID=mRNA_S-ischiensis_contig9.20790.1|Name=mRNA_S-ischiensis_contig9.20790.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=10658bp|location=Sequence derived from alignment at S-ischiensis_contig9:3247055..3257712+ (Schizocladia ischiensis KU_0333)
ACGCAATCTCGCAGGGCTCGCACAACTCCCCAGGTAGGGACCAGGTGCTC
GCCCGTGTCTTACAAACTATTGGAAGTGCTGGCTATGCATTCCCCCTGGG
GATTCCGGCTGATCTTTGCCCTGGCTCTGGCCACAACGGTGCACAGTTTC
GTGATTTCCTCCGGGGCCGTGGCTCGAGCGACCATCTCCCGTCCGAGGCA
CGCTGCAGCGCACGCACCCATCACGTGAGCCCTCTGTATACAGCGTGCGT
GCAAGGTGTAGGTCCAGGTGTCGGCGATGCCGGCGCGCTGCCCCCCGTGC
TCAGTCGGCACAGAACTCGGAAACATGAACGGCGTTGGCGATGACGGTTT
CCGACCCGCAAGCTGCATGCTCAAGTCCTCCTTGGTTGACATCCCAACGC
CGCTGCCTCCGGAATCAGCATGGACGCCGCCCTCTCCGGCAAGGCACTGG
TGGTAGGGGGCAACCGCGGCCTGGGGTTGGCTGTTGTCCAGAACTTGGTC
GGGCAGGGCGTTGAGGTCATTGCCACCGCCAGGAAGTCTAACCCGGAGAT
GGAGGTGAGCCCAAGAATTACAGACGCAACCGTTGTTTACTGTCACGACG
TCGCTCGACCTCGTCGCCTACAATCTCTGAGAGCCTTGGAGATCTCCCCC
GGTGCTAAATCACCGTGGGAGGGGGGCGTGGGCCCGGGCCGTTTTTCGTT
CTCGCTCGAGAACCCTGTTTCCAAGTGCCTGGAACATACAGTCATTGCCA
CTGCCAGGAAGTCTAACCCGGAGATGGAGGTGAGTTCCCGTCTCCACTAT
CAGATGAGCTGTGCTTTCATGTCGTGACCTGGGACTTGACACGGCAATGT
GAACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGGTGTGTGC
GTGCATGTGTGTGTGTGTTTTACTCGTACTCTCTTCTTTCCTTGACCTTG
GAAGGTGTATCATGCAGCCCAGTTTGCGGCCGCGGTGGTGGCAACAGTCG
GCGGCGGCAGCGGGGGTGGGGCATGTAACTCAATCTTTACTCGTTTTGTG
TGGATGTCTGTGGGTAGTGAAGCCGAGCATGGGGCGCTCGATTGTTCCCG
TGGTGCTTTGCAATCCCTACAGCAGCAAGGGGGCAACAAACTGTGTTTTT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCGCGTCCGCCTCCCCCTCCTCCTCCGCCTCCGCCTCCCCCTCCCC
CTCCCCCTCCCCCTCCCCCCCCCCCCCCCCCTCCCCCTCCCTCCCCCCCC
CCCTCCCCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTC
CCCCCCCTCCCCCTCCCCCTCCCCCCCCCCCTCCCCCTCCCCTCCCCCTC
CCCCTCCCCTCCCCCCTCCCCTCCCCCTCCCCCTCCCCCCCCTCCCCCTC
CCCCTCCCCCTCCCCCTCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCCCCTCCCCCCCTCCCCCTCCCCCTCCCCCCCTCCGCCTCCTC
CTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGCTCGCTG
GCAGGCTGCCGGGTGCAAGATCGTAGCAGGGATTGACGTTGCGGAGGAGG
ACTCAGGCCAGAAGCTGGTGGAGGGGGTGACTGGGCACCTGGGCGAGGGC
TGTACCCTCGACTACCTGATTGTCATTGCCGGGTGGGTGGGTGCAAGTGC
ACAGGGGACCAGGATATATACTCGTATATATACATATACTGCTCCGTCTC
GACCGAGGCGCGTAGTCAATGGTCTCGGGACTACGGCAAGCACCACGTGA
GTACTCGTACTCGTACATATATACTCGACTACGAGTACCTGATTGTGTTT
GCCGGGTGGGTGGGTGCAAGTGCACACCTGGGAACCAGGATGGGAGGCGG
TGATTCATTTCCATTTTAACGAGGTACAAGCGCACGTGTGTGAGATTGAG
TGTTCTCGTACTAGCTTACGTAGTAGTACTGTAGTGGTTATCCCATTTAA
GGATTGAGTGTTCGTATATTAGTGATTTTCACATCAAAGAATTACAAGCA
AAACAAGAGGGGGGGAATTCTGCGACGTCATTTGCCTACCCGTTGAACCC
TTACAGGCGCTGGTGCGGACGTTGACCAGGAGCCGAGGCAAGGCGATGCG
TGCCTGAAGGTGTTTTACCCGTTCGCGAGCCCTTAAACCTGCCCCTGGTA
AATTGGACTTACACACTAAAACCCTATGATAATACGCCCCCCAGGGGTAA
AAGGGTTAAAGCCCTTGGAGGACGAAGGCTCGCTACGCCTATTCCTCCTC
CACCTCCCATCCACAAACCCTTTTTGGTTCGATAAACCCCCTCCCACCCT
AGCGGTGATGCACATAAATTGTAACGACGTACAATCGCACGTGTGTGAGA
TCGAGTGTTCTCGTCTTAGTAGTTGTGTCTTTTAAGAATTGAGTTTTCTC
GTACTACAGTACTGTACGTAGCACGCGAAGTATATGTATATGTCCTAACG
TGGTGTTGTTTTACTGCAGTGATTATCACATCAAGGAACTAACAACAAGG
AGGGGGGGGCCTGCCGGGGGCAGAGGGCCTTCTCCCGGCTCAGCCGAGGC
GTGTGGTCAATGGCCTCGGGGCTACGTCGAGATGGAGCAGTGAGTGCAGT
ACCTACTCGCAACACACTTAGAAGTGCTTCGACGCATGAATAGATCAACT
GACCCGGGTACAATAGTATGTCAACACCTGATGAGTATAGCGTTTGGTTC
TCGGCCCAGAGACTGTCCCCCCCCCACCCCCCACCGGCCGGCCCGGCATT
GGCCGCGCTAATCAGTGCCCTTGCCCCTTCCCCTGACCGACTGGCTGACG
AGCAGTTACTTCCCTTGCCCCTCCCCTTACCGACTGACTGGCTGACGGGC
AGGTACTTCACCACGGAGACGTTCGACGAGCTCAACTGGGCGGAGAACAG
AAAGATGTACGAGGTGTGTGTGTGTGGTGGCGTGTGTGCGTGTGTGTGTA
TGTGTGTGCGTGCATGCGTGCGTGCGTGTATGTGTGTGTGCGTGCGTGTG
TGTGTGTGTGTGCTTGTGTGCACGCGCGCATGCGTGCTTGTGCTTGTGTG
AGAGAGAGCACGTGCATGTGCATTTGTGTGTGTGCACGCATGTGCGCGTG
TGCGTGCGTGCGTGCTGGTATTCTGTGTTCTGTTAGTATGTGTGCGTGCA
TGCATGCGCGCGCCTGCATGCTCGCCGCGCGTGCGCTGGTGTACTTCATG
AAACTCTCCCCAGGGAGGGGGTCGAACTCAGGTTCCCTCCCCCCCCTCTA
CAGGTGTGGGGGTCCCCCCCTATGGGATGCTCGGTCTTACGGCTGCGGCA
AGCAATTCTTCCAAGTAGGCCCCTGACCCACCCCCGCAGGCCTCTGTCTG
TTCCATACGGTCACCCCTTTATTGTGAGCAGAGAACAGAAGCGGGCGAAA
AGGAGAGGTGCCTCTACATTGCGAGTCCCGCTGCGCGGTGCGATTTTATG
TGATGTGATGTGATGTTGAAGTATGCACTTGCAAGTGTGGTCACAATGCT
GCACTTCCCATAAGATGTGGTGTGATGTGATATGATGCGATGTGACGTGA
TGTCGGGCTATGCTCTGGGAAGTATGAGTACATGTATGGGCATACTGCTT
CCCGAGCAAGTGCGTACCCATACCTCCGGTAGTTCTCGACACCTTTAGAG
CGCATGTTCACACCGCATCACATCGCATCACATCACATCAAGTCACATCA
CATCCGCAAAACATCGCATCTGGGGTGAGCCGCCCCAACAACAGGGCGAA
CCGCACTCCACGCCTTTGAACCAACGCACACACGCACGCACACACACACA
CACACACGGATGCGGGGGTGCCCCTGCGGGACCAATGCACGCACGCACGC
ACACACACACACACACGGATGCGGGTGTACACACCTCAAACGCGGCCTTG
GGCACCCCTGCAGGACCAAAGCACACACACACACACACACGCACACACAC
ACACACACGTCGAACGGCGGCCTCCCTGGCAGATATGCGCCCTCGGGCTT
TTTCCGCGCGACCCACACACGCATACACACACGCACACACGGATGCGGGT
GCACACACCTCGAACTGCGGCCTCCCGGCAGATACGCACGCACGCACGCG
CGCGCGCACACACACACACACCTCGAAACGCAGCCTCCCTGGGACAGGGT
TGGCACTTAACCCCTACAGTAAGTGGTGCCCTTTTAGGCCCGTAGCTAGA
GGTAACTAGGGGTTATTAGGCCTAAAATGAAGGCTGATTAGGCCCGATTA
ACCTCTAAGTGCCAAACCTGCCCTGGCAGATATGCGCCCTCGGGCCTTTG
CGCGTGACCCAGGCGCTGGTCAAGGCGGGCCTGATTAAGGAGGGCGGGAA
GGTGGGCCTCATCACCTCGGAAGGCGGGTCCATCTCGCTGCGGTCAGAGG
CAGAGGGGGGGGGGAACTATGGGTGAGTGAGCTGGGGGCAGTTTTTTTCG
GGAAAGTATGTACTTCCAAGTACTCGAGTGCTCGTACTGTACGTCAATGG
TCCCTGGACTACAGGAAGCACAGCATGAGCACGTACTCGAGTAAATGTAT
ACGAGAATATTCTTTGCAGTATTGTACTATGAGTACAAATGAGTACATGC
ATACTTCGAAGTATAGTATTATGGTACTTCGAAGTGTTTTGGGCAGACCA
CCACGTGATGTGTGCGGTCAACGCCCGTGCACAACCATGGCCTGAACTGA
AAAGGCGGGCCGGGCTGCCCATTCTCCTGACGAGGAGCACGTGTGCTAAC
CCTTTCACCCCTGGGGTCTGTAAGTTCATAGGGTTTTAGTGTGCTATGTC
CAATTTAGCAGGGGCAAAAGGGTCATTGCCCGCTTCTTCGGACGTGTGGT
ACTTTCTATAGTGCAGTACAGTAGCATGAGTGCTGAGGGCATGGGCAATG
AACGAACTCTGTGCACACCGTAGTTATTTTTACCTGCCCATGGCAAGGGG
GTGGCCCCTCCCTCCCACCGTGGCTTGCCAGGGGCGGGAGGGGCTTTGCT
CCACCCGCGACGGCGCGTGGCCAATGGTCTCTGAACCACAGCAAGGGCTA
TATATGTACTCACTGGCCACTGCGGCAAGCACAACGTGAGTACATATATA
CGTATACGCGCCGCAGTGTCGAGACCATTGACCACGCGCCTCAGTCGAGA
CGGAGCGGTGAGTAGACATGTATATGTATACGAGCACACAGCAGTCCGTT
GTTGGTTTACAGCGGCAGAGCTTCATCCACGTTGTAAGGTTAGCCACACC
CGGAAGCCCCATTCTTCTTCCTCTTCGGGTCAACCCTAGACTTAAACCCT
AAACCCCAGCCCTGTCCGATATCAGTACTTCGAAGTACATATATAGGTAC
CCAAACTGCCAGTTCACCGCCCCCGCCCTCCCTTCGGCCCACCACAATGC
CGGGGCTCGGCCTTTTTGTGGCAGGCACCACATGAGCAAGTGCACGCAGA
ACACCCTGTCCGGCATGAGTAGATATATGCGCAAACCGCCTGTTCACTCC
CCCCCCCCTCCCTTCCGCCCGCCACAACGCCTGGGCTCGGCCTTTTTTGC
GGCAGGCACCACATGAGCAAGTGCGCACAGAACATGATGGGCAAGCTGTT
GGCCTGGGACCTCAAGCCCCTGGGCATCGGGGTCGTCATGCTGCACCCAG
GTACTTTTTGAATTATTGTGATGGCATGCGAGTTCCGGTCCCCGTCCCAA
CAACCGAACGTGGGGACCTCACCAGAAGCCCTTCTTGTGCTTTGCTGCGA
CGCGTCGTTTGGGATGCGATGCGATGTAATGTGATGCGGTATTATGCGTA
GTCTAGAGTAGACCGCTGTACTCGTATTTTAAGGAGCAACAAGGGGCGAG
GTGCGGGCAACGTCACTAGAGACCTCAACAATGGCCCTTCCTTAGCTCGC
CCGGGGACAGTTGTGTGGGGAAGGGGAGGTGGACGGGGAGGAAGAGGGGG
AGGAGGAGGAGGTGGAGGGGGAGGGGTGGCGGGAAGACTCGGGAGAGGGA
TGGGACAGGGCGCGTAGTTTGACATCGCACCGCATCGCATCACGTCGATT
TCTCAGTGAGGCTCAACTCGCAAACCACAGCAGAGGATTTACCCATACAC
GGAACCCTCCCTCCTTTTTTAATCGTTGTGATGGCATGCGAGTTCCGGGC
CCCGTCCCAACAACCTAATGTGGGGACCTCGCCAGAGGCCTCTCTTTTCG
CCCACAAGGCACAAAAATCAAGCAAAAGAAGGTACACCTTGGGTTGACGG
GGCCCGGAACTCGCATTCATCAGAATAATTAAAAAGGGGCGATGCAGGGG
CAATGCAGGGGCAATACAGGGGGGTCTTTCTTGGTGTGCGCAGATCCTCA
TGGCGGTCCACTATTTACGTCCACCTCTACTGAGCTCTCTCTGTTGATTC
TTTCGGCTGATTATTTCGTCAACGTCTCCTGCACGCGAGCAACGGGTCCC
TCTTTCCTTTGGCACGCAGGCCCCCCCAAGGCTTTCATGACGGGGCACCA
CCTACTTATGCCAGCCTCTGCCGAGCTCTGTTGATATTTCGGCCGATTAT
ATATGTTCAACGTCTCCTGCACGCAAATGGGACCCCTCCTTCCTTTGGCC
TGCAGGGGCCCTCAAGGCCTTCACGACGGGGCACTGCCTACGCCAGGCTC
TGCCGAGCTCTGTTGATGTCAGTGATTCATATTTTGCCCGCGAGGGGAAG
AAGGACTTCGTTGAGTCCCGTTTCGGGACGAGCCTTTTGGCACGGGGCCT
GGAACTCGCTACTTATCTACCACTCAAATATATTGTAACGAGGTCCAATT
GCACGTGTGTGAGATTGAGTGTTCTCGTATTAGTGGTTTCCATTTATGAA
TTGATGGGGGACCTGAACTCGCGTAAGTAGGAACACCTCTTCTTTCCCAC
TCGCTTGTTTATCTTCATGCCAAAATTTATTGTTCGTGTATTAGTGATTG
TCACAACAACACTTTGTGCTGCTTCGAAGTAGTTCTTTGATGTCTTTCGG
CCGATTATTTTGTTGACATCTCCTGCACGCAAATGGGATCCCTCCTTCCT
TTGGCTGGCAGGGTTCCTCAAGACCTCCATGACGGGGCACTATGCCCACC
TCTACGAGGAGCTCGGGGCAGTCACTCCGGAGGAGGCCGTGCCACACATC
CTCAAGGCGAGGTTACATGTACTACGTAGTAGTGGATAGTATGTACTCAC
GTTGTGCTTGCCGTAGTCCCGTTACCATTGACCACGCGCCTCGGTCGAGA
CAGAGCAGGACCCCTCCCTCCCCTGGCAGAGGCAGGGTGGGAGGGGGTGG
CCACCCCCACACCACATCAAGGCGAGGTTACACCAAATATTCTGTTCAGA
AGAGTTGAACTGTGTCATGCCCTCAAGTCGTGCAGGTCGTTGTCCGCGAG
ACCGCCGGCAAGGTCATGAAATCATGACGCAGAGCACAAATCTTTGTGGG
TACAGTGGAAGAGACCGATGATGCTTGCAGCGCCTGAATATACTTGTACG
AGTACAGCACTTCAGAAGTGTACTGTACAGTATACTGTAGGTGAGCGTAT
CATGTACTTCGAAGTGCATGCTATGTGTGTGTGTGTGTGTGCTCTCACGC
TGTGCTTGCCGTAGTCCCGAGACCATCGACCCTATAGCGCCTCGACCGAG
ACGGAGCAGGCCCCCTCCCTCCCCTGGCAGAGCCTGCGCTCGGTTGATGA
GCTACAAGAAAGTGCTTCGAAGGAGGGTTTTCGTTTAGTCTCAGGTAGGT
GCTGCACCTCTGCGGTAAAGCACAGTGTGCAAGCACTGCAGCAACCGTAC
TGTATGTACAGTAGCGTGGCCAATGGCTTCGGCTACAGCTGGCCAGCGAT
CCACGAGAAGGAGCAAAGACGAGGGTCGTTCGGGTCCAGGGCATGCACGG
AGACATGAGCACACACAGTAGCACAGTGCGAGTGTAGGGCAAATGGCTCG
AGCGCTTGTGCAGCGTACACCTGACCGGGCGGATGGATTCTTCTTTCGTG
TGGTCTTGCTGTGACTATCAAGTACAGTCCACGCCGGGCGAGTATTCCGG
CGGTTTCCCCCCCCCCCCCAACAAGAGCGGTTGGCTGTAGCCAGCCTCCC
CGACAACAGAGGAAACAGTGCTCGGTCCCGTGGGGTCCACCCCCGTGATG
TGATGTGATGTGATGCTATGTCAAACTACAGCACTTTAGAGTGCGCATCA
CATCACAACATTTCACATCAAATCCCGTAGGGTCACCCCGGTGGGACGCG
TGGTCAATGGCCACATGGCTACGGCAGGCAACTCATGAGTACCCCCCTCC
CATGGATGCCGATTTTGACACACGCCTTCTGCCGCGGCACCGCTGGCCTG
CCACCGCAGGCCGTGGAAGACGTGAAGCTCGAGACAACGGGGAAGTTCAT
CGCACCTATGGGGAGCTCAGGCCTTGGGCTGGGCGTGTGGGCGCTGCCTG
ACCCGGACAGCTTTGGGCCTTTCAGCGAGCTGCCTTGGTGATGGTGCCCC
CCCCCCCGGGGGGGGTCGATGGCTATTTTTTGCAAGAAGGTAAAGAAGCG
AGTGGGCAAGTGGAGGTGTTCCTACTTGCGCGAGTTCAGGGCCCCATCCC
CGGAAGCCCGTCCTTTCTCTCGCCTTCACTCGCAGGGCATACAGATGGCT
GTTGTTCTTGCCGTGGGCAATGTGCTCTTGTGTGCCCCGGAAAGTATCTT
CTGTAAGTAGCTGTTGTTCCAGGCACTTGCAGGGGTACAGCGTGCTCTGA
CGTCCTTGGAAGCACTTGAGAAGTGCTCGGCCAAGTACCCCCGCAAGTGC
AAACGCGGCGCTCGGCCGTACTTTGGAGCATATCATCTACAGTACAGTAG
TGTACGAGCACTACATATTTTATCAGTTCTCAAGTGCTTAGAGTGCTTGG
GACTACCCTGTCTGCGTCGTCCCCTGCCACACCGCCACCCCCCCTCCCCC
CCCGACACACACACACACACACCCTCTCCCCCCTCCTCCAGTGGCTTCTC
CTCCTCCCCCTCCCCTTCCACACACCTTCCCTGGCAAAAGCTAGGGATGG
GCCACTGTTGAGGTATTTGGTGGCGTGGCCCGCACCTTATATAGCCCTAC
GTTGTTCCCGTTAGTGCTGTAGTACTGAGGCATGGAAGGCGTTTGCCACT
GTTGAGGTATGGTGGCGTGGCCCGCGCCTGTGTCGCCTGTGTTGTTCCCG
TTTATGCTTGGAATACTTGGCACTTGGCGGTGTCGCATCTAGGAAGTACA
GTGCGGTATGTACAGTAGTGTGCTCTTGCTTGTTTACCAGTGCCTACTTC
TACAAAGTACTTCCAAGTACGTAGTGTGGTGTGATGCGCTCTGCGTGGCG
CGCTCGCAATCGTAGGATCGATCGGATTGGTGGGGGGCACCGCGCTGTGG
CCATGCGGTTGCGTGTTTGCCGCACCTGCCCTCCGGGGGCAGAGATGACG
TACCGTACTGTACCGTACAGTAGTCCGTCCACTGTACAGTACAGTAGTCC
GCGCCGTAGTCCGCACACTGTACAGTCAGGGGCAGTGAGGACTATAGCGC
ACTGTGCATTACAGTAGTCCGCCCACTGTACAATGGTAGTCCGCCCACTG
TACAAGACGGTGGTCCGTCCACTGTACAGTACCATAGTCCGAATACAAAG
GAAGGTATGAGTATACCGTGACGCGGTGTACTGGACGAGTCGTACGTACG
AGTGAGTCTGTAGAAGCTATTTAACTTACCTCGCCCTGTGTTGTTCCTGT
TAGTGCTGCCCTCTGCTACAACCGTGTTTGACCGGCCATGCCCCCCGCGG
GGGGGGGTGTCCCGGAACTGCCCTTGCTCCAACCATTTGATGCGATGTGC
AGTATGGACTTCGGCGGAGTGCTTCCAGGCACTCACTCGAGGCTGGCACA
GATCATTTGCAAGCGCCCTGCGCACAGATATTTGCGAGCGCCCTTTGTTG
TGTCGCGGGAGCAGCCGGCCGAATCGGCCGTTTCTACCGCCAGCCTGTGG
CGCTCCCTGCAATGCAAGCACTCTCTCTTATTTGAGTGGTAGATAAGCGG
CGAGTTCCAGGCCCCGTGCCGAAAGGCTCGTCCCAAAACAGGGCTCAACG
GAAGCCCTTCCTTCCCTCACAGGGCAAGAGTATCTCTTGTATGCGTGTAC
TCAGTGCAGTATAGCTCCAGGGTAGTTGTTCACATAGATGCAAACGAGGT
ACAGTCGCACTGTGTGTGGAATTGAGTGTTCTCATAGAGATTGGTGTGAC
GTGATGTGATGTGATGTGATGTCAAACTACAGTACAGTACAATCGTACTG
GTGTCAACAGCTACAAGCACATAGCTACTCCTGTCGGAGGACAAACCCCA
AGCTCCGCTTTAACTCTTTGGGCTGTCGGCTGCTGCAGGTAAGCACGCAA
GGATACTCGATGTCGCAAGACATGCCAGCGAGTACACGCTTGGAAGTACT
CAGAAGTATGCGAATGTATATATACATATATATTGGCTGATAAGCACGCC
TGGTAAGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:3247055..3257712+

>mRNA_S-ischiensis_contig9.20790.1 ID=mRNA_S-ischiensis_contig9.20790.1|Name=mRNA_S-ischiensis_contig9.20790.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1860bp|location=Sequence derived from alignment at S-ischiensis_contig9:3247055..3257712+ (Schizocladia ischiensis KU_0333)
ATGCATTCCCCCTGGGGATTCCGGCTGATCTTTGCCCTGGCTCTGGCCAC
AACGGTGCACAGTTTCGTGATTTCCTCCGGGGCCGTGGCTCGAGCGACCA
TCTCCCGTCCGAGGCACGCTGCAGCGCACGCACCCATCACATGCATTCCC
CCTGGGGATTCCGGCTGATCTTTGCCCTGGCTCTGGCCACAACGGTGCAC
AGTTTCGTGATTTCCTCCGGGGCCGTGGCTCGAGCGACCATCTCCCGTCC
GAGGCACGCTGCAGCGCACGCACCCATCACCATGGACGCCGCCCTCTCCG
GCAAGGCACTGGTGGTAGGGGGCAACCGCGGCCTGGGGTTGGCTGTTGTC
CAGAACTTGGTCGGGCAGGGCGTTGAGGTCATTGCCACCGCCAGGAAGTC
TAACCCGGAGATGGAGCATGGACGCCGCCCTCTCCGGCAAGGCACTGGTG
GTAGGGGGCAACCGCGGCCTGGGGTTGGCTGTTGTCCAGAACTTGGTCGG
GCAGGGCGTTGAGGTCATTGCCACCGCCAGGAAGTCTAACCCGGAGATGG
AGGCTGCCGGGTGCAAGATCGTAGCAGGGATTGACGTTGCGGAGGAGGAC
TCAGGCCAGAAGCTGGTGGAGGGGGTGACTGGGCACCTGGGCGAGGGCTG
TACCCTCGACTACCTGATTGTCATTGCCGGGCTGCCGGGTGCAAGATCGT
AGCAGGGATTGACGTTGCGGAGGAGGACTCAGGCCAGAAGCTGGTGGAGG
GGGTGACTGGGCACCTGGGCGAGGGCTGTACCCTCGACTACCTGATTGTC
ATTGCCGGGTACTTCACCACGGAGACGTTCGACGAGCTCAACTGGGCGGA
GAACAGAAAGATGTACGAGGTACTTCACCACGGAGACGTTCGACGAGCTC
AACTGGGCGGAGAACAGAAAGATGTACGAGATATGCGCCCTCGGGCCTTT
GCGCGTGACCCAGGCGCTGGTCAAGGCGGGCCTGATTAAGGAGGGCGGGA
AGGTGGGCCTCATCACCTCGGAAGGCGGGTCCATCTCGCTGCGGTCAGAG
GCAGAGGGGGGGGGGAACTATGGATATGCGCCCTCGGGCCTTTGCGCGTG
ACCCAGGCGCTGGTCAAGGCGGGCCTGATTAAGGAGGGCGGGAAGGTGGG
CCTCATCACCTCGGAAGGCGGGTCCATCTCGCTGCGGTCAGAGGCAGAGG
GGGGGGGGAACTATGGGCACCACATGAGCAAGTGCGCACAGAACATGATG
GGCAAGCTGTTGGCCTGGGACCTCAAGCCCCTGGGCATCGGGGTCGTCAT
GCTGCACCCAGGCACCACATGAGCAAGTGCGCACAGAACATGATGGGCAA
GCTGTTGGCCTGGGACCTCAAGCCCCTGGGCATCGGGGTCGTCATGCTGC
ACCCAGGGTTCCTCAAGACCTCCATGACGGGGCACTATGCCCACCTCTAC
GAGGAGCTCGGGGCAGTCACTCCGGAGGAGGCCGTGCCACACATCCTCAA
GGGTTCCTCAAGACCTCCATGACGGGGCACTATGCCCACCTCTACGAGGA
GCTCGGGGCAGTCACTCCGGAGGAGGCCGTGCCACACATCCTCAAGGCCG
TGGAAGACGTGAAGCTCGAGACAACGGGGAAGTTCATCGCACCTATGGGG
AGCTCAGGCCTTGGGCTGGGCGTGTGGGCGCTGCCTGACCCGGACAGCTT
TGGGCCTTTCAGCGAGCTGCCTTGGTGAGCCGTGGAAGACGTGAAGCTCG
AGACAACGGGGAAGTTCATCGCACCTATGGGGAGCTCAGGCCTTGGGCTG
GGCGTGTGGGCGCTGCCTGACCCGGACAGCTTTGGGCCTTTCAGCGAGCT
GCCTTGGTGA
back to top