mRNA_S-ischiensis_contig9.20789.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20789.1
Unique NamemRNA_S-ischiensis_contig9.20789.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20789.1 vs. uniprot
Match: D8LLP4_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP4_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 2.630e-69
Identity = 157/297 (52.86%), Postives = 181/297 (60.94%), Query Frame = 1 
Query:   28 MGNKGSTGSS---HGQGLASDIRDALPTMPGSQPKIKTGRKVTAQKLKTAGSTGVLALQEHGLKEVPAAIFELVNLRTLHLASNALRILPPGGVAAXXXXXXXXXXXXXXXXXPDLSMLTALQDLSADGNSLTGQGALVGLPGGLSKLSLAGNKLGGFPEAVLAGLPKLEVLNLTGNSIHEIPPLEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIEGSAPPDGRQSLARELFESSKVEVLELEGNPLTKRDLLDMDCVNAFLERREKAKNKNLHGGALLHLSVCGLD 909
            MGNK S+ SS    GQG  SD RDAL ++PGS PK KTGRKVTAQK+KTAG+TGVLALQEHGLKE+P  +F LV LRTL++AS             XXXXXXXXXXXXXXX  PDLS L++L D+SA  N L G GAL  LP  L KL L  N+LG  P AVL GLP L+VL+L+ N I  +PP  A                                    RI    P  G+QS++R LF  S VE LEL GN L K DL+ M+ V+ FL RREK KNKNL GG +L LSVCGLD
Sbjct:    1 MGNKESSHSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQKMKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXI-PDLSALSSLTDVSAGSNQLAGAGALGALPACLKKLVLRDNRLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALEELILDENSLRALGDELVGLSKLKKLSVRSNRIAAVDPFSGQQSISRGLFADSAVESLELAGNALDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 296
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BLAST of mRNA_S-ischiensis_contig9.20789.1 vs. uniprot
Match: A0A5D6XNJ4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNJ4_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.970e-29
Identity = 118/261 (45.21%), Postives = 148/261 (56.70%), Query Frame = 1 
Query:  127 KTGRKVTAQKLKTAGSTGVLALQEHGLKEVPAAIFELVNLRTLHLASNALRILPPGGVAAXXXXXXXXXXXXXXXXXPDLSMLTALQDLSADGNSLTGQGALVGLPGGLSKLSLAGNKLGGFPEAVLAGLPKLEVLNLTGNSIHEIPPLEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIEGSAPPDGRQSLARELFESSKVEVLELEGNPLTKRDLLDMDCVNAFLERREKAKNKNLHGGALLHLSVCGLD 909
            K  R V  QKLK+A +TGVLAL +H LK++P  + EL NLR+L ++SN L  LP    AA                 PDLS LT                    LP  L+KLSL  N+L   P +V   L +L+ L+++GN +  +P    A      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXR+       G   +ARE+   S V ++ LEGNP++K DL  MD    FLERR +AKNK +HGG    +S+CGLD
Sbjct:   20 KQTRSVLQQKLKSAAATGVLALPDHKLKQLPRELLELANLRSLDVSSNRLAELPRDFAAALPQLRTLKLAGNALTALPDLSALTXXXXXXXXXXXXXXXXEA--LPPNLTKLSLKNNRLRELPLSVTR-LAQLQELDVSGNELAALPEHVGALASLVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRL-------GPHGIAREVLTDSGVHIMNLEGNPMSKFDLEAMDGFERFLERRTQAKNKEIHGGLSADVSLCGLD 270
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BLAST of mRNA_S-ischiensis_contig9.20789.1 vs. uniprot
Match: A0A6G0WCG6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCG6_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.870e-28
Identity = 120/263 (45.63%), Postives = 150/263 (57.03%), Query Frame = 1 
Query:  121 KIKTGRKVTAQKLKTAGSTGVLALQEHGLKEVPAAIFELVNLRTLHLASNALRILPPGGVAAXXXXXXXXXXXXXXXXXPDLSMLTALQDLSADGNSLTGQGALVGLPGGLSKLSLAGNKLGGFPEAVLAGLPKLEVLNLTGNSIHEIPPLEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIEGSAPPDGRQSLARELFESSKVEVLELEGNPLTKRDLLDMDCVNAFLERREKAKNKNLHGGALLHLSVCGLD 909
            K  T + V AQK++ A +TG+L+L+   LK++PA +F +  L TL L+ NA+  LPP  +                   PDLS L  L  L+AD N+LT  GAL      L+KL+L GNKL   PE+V   L  LE L++              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +       G QS A E    S V V++LEGNPLTK DL  MD   AF+ERR+  K+K +HGG    +S+CGLD
Sbjct:   13 KAITKKSVQAQKIERARATGILSLKGCKLKQIPADVFAIPTLHTLDLSQNAITELPPQ-ITELTALKTLKVDGNQLVELPDLSALVKLTTLAADNNTLTRIGALAP---NLTKLTLRGNKLTTLPESVCT-LTALETLDVAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFARHNEL-------GPQSFAPEFLHGSAVNVMQLEGNPLTKLDLEAMDGAQAFMERRKILKDKEIHGGLSTDVSLCGLD 263
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BLAST of mRNA_S-ischiensis_contig9.20789.1 vs. uniprot
Match: A0A024UGH6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UGH6_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.960e-28
Identity = 120/263 (45.63%), Postives = 152/263 (57.79%), Query Frame = 1 
Query:  121 KIKTGRKVTAQKLKTAGSTGVLALQEHGLKEVPAAIFELVNLRTLHLASNALRILPPGGVAAXXXXXXXXXXXXXXXXXPDLSMLTALQDLSADGNSLTGQGALVGLPGGLSKLSLAGNKLGGFPEAVLAGLPKLEVLNLTGNSIHEIPPLEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIEGSAPPDGRQSLARELFESSKVEVLELEGNPLTKRDLLDMDCVNAFLERREKAKNKNLHGGALLHLSVCGLD 909
            K  T + V AQK+  A +TG+L+L+   LK+VP  +F +  L TL L+ N +  LPP  +A                  PDLS L  L +L AD N +     + GLP  LSKLS+  NKL  FP  + + L +LEVL+               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     ++    PP   QSLA E  + S V V++LEGNP+TK DL  M+ V AFLERR+  K+K +HGG    +S+CGLD
Sbjct:   14 KAITKKSVQAQKIDRAHATGILSLKGCKLKQVPVDVFNIPTLHTLDLSLNDITELPPR-IAQLTALKTLKVDGNQLTRLPDLSPLVKLNNLVADNNVIA---VIDGLPMSLSKLSVRNNKLTSFPRCI-SSLARLEVLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFARHNQL---GPP---QSLAPEFLQHSSVNVMQLEGNPMTKHDLEAMEGVAAFLERRKILKDKEIHGGLSTDVSLCGLD 265
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BLAST of mRNA_S-ischiensis_contig9.20789.1 vs. uniprot
Match: A0A8K1FJY8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJY8_PYTOL)

HSP 1 Score: 111 bits (278), Expect = 4.700e-25
Identity = 122/263 (46.39%), Postives = 150/263 (57.03%), Query Frame = 1 
Query:  121 KIKTGRKVTAQKLKTAGSTGVLALQEHGLKEVPAAIFELVNLRTLHLASNALRILPPGGVAAXXXXXXXXXXXXXXXXXPDLSMLTALQDLSADGNSLTGQGALVGLPGGLSKLSLAGNKLGGFPEAVLAGLPKLEVLNLTGNSIHEIPPLEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIEGSAPPDGRQSLARELFESSKVEVLELEGNPLTKRDLLDMDCVNAFLERREKAKNKNLHGGALLHLSVCGLD 909
            K K  R V  QK++TA STG+LAL E  LK+VPA + EL  LR+L L S             XXXXXXXXXXXXX    PDLS LTAL  L  DGNS+  +     LP  L+KLSL GNKL   P+ + + L +L+                  XXXXXXXXXXXXXXXXXXXXXXX            ++ G       QS+A  + + S V+++ LEGNP+TK DL  M+   AFL+RR + KNK +HGG     S+CGLD
Sbjct:   18 KPKNNRNVQNQKIQTAKSTGMLALPERKLKKVPAEVLELTQLRSLDL-SXXXXXXXXXXXXXXXXXXXXXXXXXXLTTLPDLSGLTALTTLVLDGNSI--ESLPNALPPNLTKLSLKGNKLSAIPQTITS-LSQLKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCPKLKVISARHNQLRGGKA----QSIAESILKDSIVQIMNLEGNPMTKFDLEAMEGCEAFLQRRTQLKNKEIHGGLSTDTSLCGLD 272
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BLAST of mRNA_S-ischiensis_contig9.20789.1 vs. uniprot
Match: A0A225UJM0_9STRA (Putative LRR protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UJM0_9STRA)

HSP 1 Score: 108 bits (271), Expect = 6.490e-24
Identity = 129/274 (47.08%), Postives = 160/274 (58.39%), Query Frame = 1 
Query:  121 KIKTGRKVTAQKLKTAGSTGVLALQEHGLKEVPAAIFELVNLRTLHLASNALRILPPGGVAAXXXXXXXXXXXXXXXXXPDLSMLTALQDLSADGNSLTGQGALVGLPGGLSKLSLAGNKLGGFPEAVLAGLPKLEVLNL------------TGNSIHEIPPLEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIEGSAPPDGRQSLARELFESSKVEVLELEGNPLTKRDLLDMDCVNAFLERREKAKNKNLHGGALLHLSVCGL 906
            K K  R V  QKLK+A +TGVLAL    LK++P  +++L  LR+L L S             XXXXXXXXXXXXX    PDLS L AL  L  DGN L  +   + LP  L KLSL GNKL   P ++L+ L  L+ L+L            + N++  +P        XXXXXXXXXXXXXXXXXXXXXXXXXXX      + G +     Q +A +L + S V+V+ L+GNP+TK DL  MD  +AFL RR K KNK +HGG    LS+CGL
Sbjct:   18 KPKNSRSVQQQKLKSAKATGVLALPNSKLKKLPDELWQLSTLRSLDL-SXXXXXXXXXXXXXXXXXXXXXXXXXXLAALPDLSPLQALTTLVLDGNVL--EDLPLALPPNLIKLSLKGNKLRAVPRSILS-LVHLQELDLIXXXXXXXXXXXSDNALDLLPANLGEMQEXXXXXXXXXXXXXXXXXXXXXXXXXXXSARRNSLVGKSAGAKTQPIAAQLLQDSAVQVMNLDGNPMTKEDLQAMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGL 287
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BLAST of mRNA_S-ischiensis_contig9.20789.1 vs. uniprot
Match: A0A418AK49_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AK49_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.430e-23
Identity = 116/259 (44.79%), Postives = 149/259 (57.53%), Query Frame = 1 
Query:  121 KIKTGRKVTAQKLKTAGSTGVLALQEHGLKEVPAAIFELVNLRTLHLASNALRILPPGGVAAXXXXXXXXXXXXXXXXXPDLSMLTALQDLSADGNSLTGQGALVGLPGGLSKLSLAGNKLGGFPEAVLAGLPKLEVLNLTGNSIHEIPPLEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIEGSAPPDGRQSLARELFESSKVEVLELEGNPLTKRDLLDMDCVNAFLERREKAKNKNLHGGALLHLSV 897
            K  T + V AQK+  A +TG+L+L+   LK+VP  +F +  L TL L+ N +  LPP  +A                  PDLS L  L +L AD N +     + GLP  LSKLS+  NKL  FP  + + L +LEVL++              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     ++    PP   QSLA E  + S V V++LEGNP+TK DL  M+ V AFLERR+  K+K +HGG    +S+
Sbjct:   14 KAITKKSVQAQKIDRAHATGILSLKGCKLKQVPVDVFNIPTLHTLDLSLNDITELPPR-IAQLTALKTLKVDGNQLTRLPDLSPLVKLNNLVADNNVIA---VIDGLPMSLSKLSVRNNKLTSFPRCI-SSLARLEVLDIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFARHNQL---GPP---QSLAPEFLQHSSVNVMQLEGNPMTKHDLEAMEGVAAFLERRKILKDKEIHGGLSTDVSL 261
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BLAST of mRNA_S-ischiensis_contig9.20789.1 vs. uniprot
Match: A0A836CA00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA00_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.160e-22
Identity = 96/230 (41.74%), Postives = 123/230 (53.48%), Query Frame = 1 
Query:  223 AIFELVNLRTLHLASNALRILPPGGVAAXXXXXXXXXXXXXXXXXPDLSMLTALQDLSADGNSL-TGQGALVGLPGGLSKLSLAGNKLGGFPEAVLAGLPKLEVLNLTGNSIHEIPPLEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIEGSAPPDGRQSLARELFESSKVEVLELEGNPLTKRDLLDMDCVNAFLERREKAKNKNLHGGALLHLSVCGLD 909
            A+  ++ LRTL L+ N+L+ LP   +A    XXXXXXXXXXXXXX          DL+A  N L  G  A+  LP  LSKL L+ NKL   P A+ AGLP L++ NL+ N+I  +  L                                         GS    G Q LA+ELFE + V VL LEGN +TK  LLDM  V+ F+ERRE++K+K+L GGALL+ S+CGLD
Sbjct:   13 AVDSVLTLRTLDLSVNSLKQLP--SLAPLSRXXXXXXXXXXXXXXXXXXXXXXXLDLNAARNELGLGGDAVPCLPTTLSKLDLSSNKLSQVPAALAAGLPALQICNLSSNAITSLAGL--GGLPALEELLADDNQIAVIEPSIRELRRLKTLSLRSNCIGSDLSRG-QPLAQELFECTAVVVLNLEGNVITKTQLLDMQGVSKFMERRERSKDKSLAGGALLNFSLCGLD 237
[Close]
BLAST of mRNA_S-ischiensis_contig9.20789.1 vs. uniprot
Match: H3GRI1_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GRI1_PHYRM)

HSP 1 Score: 105 bits (261), Expect = 1.380e-22
Identity = 125/264 (47.35%), Postives = 146/264 (55.30%), Query Frame = 1 
Query:  121 KIKTGRKVTAQKLKTAGSTGVLALQEHGLKEVPAAIFELVNLRTLHLASNALRILPPGGVAAXXXXXXXXXXXXXXXXXPDLSMLTALQDLSADGNSLTGQGALVGLPGGLSKLSLAGNKLGGFPEAVLAGLPKLEVLNLTGNSIHEIPPLEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIEGSAPPDGRQSLARELF-ESSKVEVLELEGNPLTKRDLLDMDCVNAFLERREKAKNKNLHGGALLHLSVCGLD 909
            K K  R V  QKL++A +TGVLAL    LK++P  + EL  LRTL L               XXXXXXXXXXX      PDLS L AL  L  DGN L  +     LP  L+KLSL GN+L   P +VL  L +L+                  XXXXXXXXXXXXXXXXXXXXXXXXX           + G +     Q +A EL  E S V+V+ LEGNPLTK DL  MD  +AFL RR K KNK +HGG    LS+CGL+
Sbjct:   18 KPKNNRSVQQQKLRSAKATGVLALPNSKLKKLPEELLELSTLRTLDLXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTL-PDLSALEALTTLVLDGNLL--EDIPSALPPNLTKLSLKGNRLRAVPRSVLE-LAQLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLKVLSARRNTLVGRSAGAKVQPIAAELLGEGSAVQVMNLEGNPLTKEDLQGMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGLE 277
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BLAST of mRNA_S-ischiensis_contig9.20789.1 vs. uniprot
Match: A0A2D4BXM0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXM0_PYTIN)

HSP 1 Score: 103 bits (257), Expect = 4.720e-22
Identity = 130/263 (49.43%), Postives = 155/263 (58.94%), Query Frame = 1 
Query:  121 KIKTGRKVTAQKLKTAGSTGVLALQEHGLKEVPAAIFELVNLRTLHLASNALRILPPGGVAAXXXXXXXXXXXXXXXXXPDLSMLTALQDLSADGNSLTGQGALVGLPGGLSKLSLAGNKLGGFPEAVLAGLPKLEVLNLTGNSIHEIPPLEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIEGSAPPDGRQSLARELFESSKVEVLELEGNPLTKRDLLDMDCVNAFLERREKAKNKNLHGGALLHLSVCGLD 909
            K K    V  QK++TA STG+LAL E  L+ VP+ + EL  LRTL L S             XXXXXXXXXXXXXXX  PDLS                       LP  L+KLSL GN+L   P +VLA L +L+ L+               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     R++G A P   QS+A  +  SSKV++L L+GNP+TK DL  M+ V+AFLERR + KNK +HGG     S+CGLD
Sbjct:   18 KPKNNSSVQKQKIQTARSTGMLALPERKLRHVPSDVLELTQLRTLDL-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLPDLSAXXXXXXXXXXXXXXXXXXNA--LPPNLTKLSLKGNRLSALPPSVLA-LTQLQELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARRNRLDGRARP---QSIAVAVLASSKVQILNLDGNPMTKIDLEAMEGVDAFLERRTQLKNKEIHGGLSTDTSLCGLD 273
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLP4_ECTSI2.630e-6952.86Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
A0A5D6XNJ4_9STRA2.970e-2945.21Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6G0WCG6_9STRA1.870e-2845.63Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UGH6_9STRA1.960e-2845.63Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A8K1FJY8_PYTOL4.700e-2546.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A225UJM0_9STRA6.490e-2447.08Putative LRR protein n=1 Tax=Phytophthora megakary... [more]
A0A418AK49_9STRA1.430e-2344.79Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A836CA00_9STRA1.160e-2241.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
H3GRI1_PHYRM1.380e-2247.35Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A2D4BXM0_PYTIN4.720e-2249.43Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3241250..3246952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.6
Seed ortholog evalue7.4e-57
Seed eggNOG ortholog2880.D8LLP4
Preferred nameLRRC57
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLeucine rich repeat protein
Ec32 orthologEc-04_004990.1
Exons7
Model size1013
Cds size885
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817402.1395783-UTR-S-ischiensis_contig9:3241249..32413501622817402.1395783-UTR-S-ischiensis_contig9:3241249..3241350Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3241250..3241350 -
1695741087.5469394-UTR-S-ischiensis_contig9:3241249..32413501695741087.5469394-UTR-S-ischiensis_contig9:3241249..3241350Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3241250..3241350 -
1622817402.2500584-UTR-S-ischiensis_contig9:3246925..32469521622817402.2500584-UTR-S-ischiensis_contig9:3246925..3246952Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3246926..3246952 -
1695741087.6686296-UTR-S-ischiensis_contig9:3246925..32469521695741087.6686296-UTR-S-ischiensis_contig9:3246925..3246952Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3246926..3246952 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817402.1555154-CDS-S-ischiensis_contig9:3241350..32414201622817402.1555154-CDS-S-ischiensis_contig9:3241350..3241420Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3241351..3241420 -
1695741087.5647204-CDS-S-ischiensis_contig9:3241350..32414201695741087.5647204-CDS-S-ischiensis_contig9:3241350..3241420Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3241351..3241420 -
1622817402.1716588-CDS-S-ischiensis_contig9:3242702..32428211622817402.1716588-CDS-S-ischiensis_contig9:3242702..3242821Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3242703..3242821 -
1695741087.5844367-CDS-S-ischiensis_contig9:3242702..32428211695741087.5844367-CDS-S-ischiensis_contig9:3242702..3242821Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3242703..3242821 -
1622817402.1859045-CDS-S-ischiensis_contig9:3243149..32433441622817402.1859045-CDS-S-ischiensis_contig9:3243149..3243344Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3243150..3243344 -
1695741087.5989993-CDS-S-ischiensis_contig9:3243149..32433441695741087.5989993-CDS-S-ischiensis_contig9:3243149..3243344Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3243150..3243344 -
1622817402.1969793-CDS-S-ischiensis_contig9:3243800..32439411622817402.1969793-CDS-S-ischiensis_contig9:3243800..3243941Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3243801..3243941 -
1695741087.6123734-CDS-S-ischiensis_contig9:3243800..32439411695741087.6123734-CDS-S-ischiensis_contig9:3243800..3243941Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3243801..3243941 -
1622817402.2102196-CDS-S-ischiensis_contig9:3245263..32454011622817402.2102196-CDS-S-ischiensis_contig9:3245263..3245401Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3245264..3245401 -
1695741087.6250596-CDS-S-ischiensis_contig9:3245263..32454011695741087.6250596-CDS-S-ischiensis_contig9:3245263..3245401Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3245264..3245401 -
1622817402.2232404-CDS-S-ischiensis_contig9:3246575..32466831622817402.2232404-CDS-S-ischiensis_contig9:3246575..3246683Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3246576..3246683 -
1695741087.6422467-CDS-S-ischiensis_contig9:3246575..32466831695741087.6422467-CDS-S-ischiensis_contig9:3246575..3246683Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3246576..3246683 -
1622817402.2350671-CDS-S-ischiensis_contig9:3246811..32469251622817402.2350671-CDS-S-ischiensis_contig9:3246811..3246925Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3246812..3246925 -
1695741087.6559155-CDS-S-ischiensis_contig9:3246811..32469251695741087.6559155-CDS-S-ischiensis_contig9:3246811..3246925Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3246812..3246925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20789.1prot_S-ischiensis_contig9.20789.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3241351..3246925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20789.1

>prot_S-ischiensis_contig9.20789.1 ID=prot_S-ischiensis_contig9.20789.1|Name=mRNA_S-ischiensis_contig9.20789.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=295bp
MGNKGSTGSSHGQGLASDIRDALPTMPGSQPKIKTGRKVTAQKLKTAGST
GVLALQEHGLKEVPAAIFELVNLRTLHLASNALRILPPGGVAALTRLKTL
RLDSNRLEALPDLSMLTALQDLSADGNSLTGQGALVGLPGGLSKLSLAGN
KLGGFPEAVLAGLPKLEVLNLTGNSIHEIPPLEAALPSLVELTLDSNAIY
VVGPALALLPRLKTLTLRANRIEGSAPPDGRQSLARELFESSKVEVLELE
GNPLTKRDLLDMDCVNAFLERREKAKNKNLHGGALLHLSVCGLD*
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mRNA from alignment at S-ischiensis_contig9:3241250..3246952-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20789.1 ID=mRNA_S-ischiensis_contig9.20789.1|Name=mRNA_S-ischiensis_contig9.20789.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5703bp|location=Sequence derived from alignment at S-ischiensis_contig9:3241250..3246952- (Schizocladia ischiensis KU_0333)
GCTGCCGTGCTGTAACCTGCAGAGGAGATGGGCAACAAGGGTTCGACGGG
CTCGTCCCACGGCCAGGGTCTGGCTTCAGACATTAGGGATGCCCTTCCAA
CGATGCCGGGTTCACAACCGAAGATCAAGACGGGAAGAAAGGTTAGAGCA
AACTGGTGTTCTTTGAGCGCTGAACAAAGTCACGTCTATTCGGCCTGAGA
GCCCCTCCCCGCCTGTCTCCAGCGCCCTGACCTCTGCCCTGCTCGGGAAT
CTGTCGCACACGCACGTAGGTGACTGCCCAGAAGCTGAAGACGGCGGGCT
CAACGGGGGTGCTGGCCCTGCAGGAGCATGGGCTCAAGGAGGTCCCGGCC
GCGATATTCGAGCTCGTGAACCTACGGGTGAGCGCATTTGCACCGTTCAG
GAGTATCATTCACATTTATTTATGCCAGAGTGGGCCCATCCAATGTATGT
GCTTGCGCCGCTCACGAGCAGCACTTGGTCAGCGTGTACCAGTACGCCAG
TCCATGGAATGGGCCCCTACTCGAGTACAGGTGTTGCATTCTTACCTAAT
CCGACCCCTCGTTGAAAGTTGTGTGTCGAAGTTCGGATACTTTTGAGTTA
GAGGAGTAGGACTGTACGAACGCTTGGGGGGGTTGTGCCGTAGCAGTATT
TGAAACACAATTTTATGTATGTATGCGAGAGTCCATGGCCCAATGGCTAC
TCCTGTCGGAGGGCAAACCCGAAGTTTCGACTTAGGGCTGTCGGCATTGC
ACGCACGGTTATGTCGCAAAACAAACCAATGACTACATATATACTTCAAG
GTGCTTGAGTGCATAGTATGACGTATGAGCACCTACTGTACCCTAGGCGC
CTCCGCAAATACTTTGAAGCACATTGTCGAGGTACATTGCACGTATCAGC
AACATTAAAGTGTGCGCAGTGCAGTCAGTGCTTGGGGGTTGTACTGACTG
CGATACTCTACTCTACGGTTTGAGACATCACTCTGAGGCGAGCGAAGGGC
GGGCTTCACTGGGTCAGGGCCCAGAACTCGCGTAGGCAAGTGTAGACGCC
TCCAACTTTCCCCGCTCGCTTAGCCCTTCTACCCCTGGTAAATTGGGCTT
ACACACTAAAACCCTATTATTATATGGCCCCCAGGGGTAAAAGGGTTGAG
TATAGACGCCTCCAACTTCCCCCCCTCGCTTTTCATTGTCTTGCACAACA
CTTTGAGGAACATTGCAAGTAACGATTGGGACAACACAGGGCGGGGTGCC
GACCACATCACCAGTACCTTGCCGGGAGGAGGAGGCGGGGGTGGGGAAGA
GCCAGAGGAGGAGCAGGAGCCGGAGGAGGGGGAGGAGGATATCTGTCCAC
AAGAACACTAATCTTTGTTTTCAATTCTTTGATGTGATAGTCACTAGCAC
GAGTACTCGAGTACGAGAACACTCAATTCTTGAATTGGATAGCCACTAGT
ACTTGTACGGGAACACTACATCTCACACACGTGCGATTGCACCTCGTTAC
AATTTATATGAATCACAACACTAATCTGCGTCCGTATGCAAATCCCGGCA
GACACTACACCTGGCGTCGAACGCCCTTCGGATACTGCCGCCCGGGGGGG
TGGCGGCCCTGACGCGGCTCAAGACCCTCCGGCTGGACTCCAATCGCCTG
GAGGCGTTGCCAGACCTGTCCATGCTGACCGCTCTGCAGGCGAGTGTATA
CATATATATGCACTCATGTTGTGCTTGCCGTAGTCCCGAGACAGTTGGCC
ACGCGCCCGGTCGAGACGGAGCAGAGCATACGAGTACTCGACTGTTTGTG
CCCCCCACGTGCCGCTCTGCCTGGCATTGTCGGACACGAGGGCAACGGCC
GCGTGGCTACCCTGCGGCCGACTGCTTGGCGTTACACGGGCTCAGGGTTG
GCAGTTAGCCGCTGCTGTACGTGGTGCCCTTTTAGGCCCTTAATTAGAGG
TAATTAGGGGCAATTAGACCTAAAATGAAGGATAATTAAGCCCTAGTTAA
CCTCTATAGTAAGTGCCAACCCAGCACGGGCTGGCCGGCGGTCCGGGGGA
GGTAGGCTGTTTCCACGATGCACGCATGCACGGGACGCGCGATTCGTCCG
GATTCGCCCGGCATGAGTGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGCGGCGAGAGAAGCACGCAAGCGCGCGCG
CCTGCCTGCCTGCACGCTTGGACCGATTGTTGGCGCTCTCACACGACTTA
TTGTACTTGATCGCCTCTTCTGTGCTCCTGTACTTGTACGAGTACGTACG
CAGTACTTACACCAGTGCTACGCGAAGCCCGTGTAGCGAGCGCACCGCCA
CCCGCCCTCCAAGTGTTAACAACAACCCTCCGAGGGCTCTGTTGGATGTG
TGATACAACCCTCGGAGGAGTACTGCTATTAGTTCTCGGTACATCAACCC
GTCACCAAACCCCCATAGTTTGTTGCCCGCCGTCCCCTGAGGGCTAACAA
CACCCCTCTGAGGGCCTCTGTTGGCCGCGTCCATCACGTACAGTAGTCCA
TATGGAGGACTACTGCTCTACCCACTCCGTCTCAACGCGAACCCTCAACA
TTTGTGATGTGTGACGTGATTTGATGCTTACTCTAATGCACTGTAGTTTG
ACATCACATCACATCAGATCACATCACATCTCCCATTTCGACTATTATCA
GCTGCTATGAACTGCTACTGCCGTCCGCTTTGGCGAGAAAGGGCGGCGAA
CTGTCGAGGTCGTTAGCGACGTGGTATGATGTGGTGTGGTGTGACGTCAA
ACTACAGTACTCACATGAGCGTACACATCACATACTTCGAAGCACGGCGC
TTGTCAGAGAGATGTGATGTGACGCGATGTGACGTCAAACTGCAGTACGT
TAGCGTGCGCATCGCATCATATCGCGACACCATCAATACTGTACTCGAGT
ATAGGAGGGCCTCACACTATTGAGGCCTTTACTTGGCCGGAAAAATAACG
CTGGCCGGCAGGACCTGTCCGCAGACGGGAACTCGCTCACCGGGCAGGGG
GCGCTGGTGGGCCTGCCCGGGGGGCTGTCTAAGCTGAGCCTGGCCGGGAA
TAAGCTGGGGGGGTTCCCGGAGGCTGTGCTCGCGGGGCTGCCAAAGCTGG
AGGTGATTGGTTTTTGTGATGTTCTGTTCTGTTATTTGATGTTGATTCAT
AGAAATTGTAGCGAGCCTTTTGGCACGGGGCCTGGAACTCGCTGCTTATC
TACCACTCAAATAAATTGTAACGAGGTACAATCACACGTGTGTGAGATTG
AGTGTTCTCGTATTAGTGGTTGACCCATTTAAGGATTGAGTTTTCTCGTG
TTAGTGATTATTTGGTGTGTGATTTGATGTGATGTCAGCTGTCCAGCCAT
TTGAGCCTTGCGGGGAATGAGCTGGGGGGGGGGGATGGGAGCGGCGCTGG
CGGGGCTGCCAAAAGCTTGGAGGCGAATGGCGGGCGCTGTGACGTGGTGT
GGTGACGTCATATCATGTGTACCACTGCCACCACCACCAACACCGCCAAC
ACCACCACCGTCACCACCACCACCACTGTCACCACCGCAAATCACCCCGG
CACCGCAGGTGCTCAACCTGACCGGGAACAGCATCCACGAAATACCCCCC
CTTGAGGCCGCGCTGCCGTCTCTCGTTGAGTTAACGCTGGACTCCAACGC
CATATACGTCGTGGGGCCCGCGCTCGCCCTGCTGCCCCGCCTCAAGACCC
TCACCCTACGTGCCAACCGCATCGAGGGCTCGGCCCCGCCGGACGGCCGT
CAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGGGTGGGTG
GGTGGATACGTGATGTGATGTATATGTGTGTAGAGATCAACAGTTATTGC
AGTGAACTGCTGGAATACGAAGTATAACCCAACGATGAGTGACTCCGAAG
AAGCAGGTGCACTACCAACTACTACTCAGAGTACTAGCACCCAGTTTGGG
CTCGGTTTTCGTTCCTTACGCGATGTTCTTTCTGTCGCACAGTCCCTGCG
CTCCCAACTATTAGTCACAGCACTATCACCCGGTTTGGGCTCGGTTTTTG
TCCCTTACGCGATGCTCTGTCTGTCGTACAGTCCCTGGCACGAGAGCTGT
TTGAGAGCAGCAAGGTGGAGGTGCTCGAGCTGGAGGGCAACCCGCTGACC
AAACGAGATCTCCTCGACATGGATTGCGTCAACGCCTTCCTCGAGCGCAG
GTGTGTCTTTGTTTGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAC
TCATGCCAGACAGGGGACACCCCGTCCTGTGGATGCCACCGGCCGTCGGC
CCGGTATACTACTCGCTGGACCGCCGGCCATCAATACCCCCGCGGGGCAG
CCTTTCGGCCATTGGCCACGTGCCCCTACAATTTCGCCGGGACGGAGCAC
ACCGGGGTCTCACCGGCACTATCGTACGTACCGCATATACTTCTCGAGTA
CGTACTATACTTTAGTAGGTACAGCGCTCCCAAGTGTCGCCAAACCCCAT
ATCCCATGGCGACGCTGTGTGACCTTGGTTGTACTGCAGCACTTGGCTCG
GCGTTGAGAGAGGGCGGTAGGGCCTGTTTATTGAATGAGCCCCAACCCGG
AACATGATGAGATGACATGCAGTGTATGCGACACGTCAGAGTACCTCGGC
CGCGTGGTGGCACGGTCGACCTTGTTGTGCTATGGTAGCGGCGTCTGAGA
GGTCGGCGAGGCCTGTTTGGCTAGCTAAGCTCACTCCGAGAGATAGTTCA
AGCAATGTATACTCGAGTACAGTGCATGCCATATATCAAAAGTACCTCTG
GCTCATTCTCACGGCGACGCCGTTGACTTTGTTGCGTTAGAGTGCAGTAG
CAGCTGTAGAGAGGGCAATGAGGCCTGGTGGCCTGTGCTGTGCCGACTAT
GGCAGGGTTGCAAGATAATGTACTGTAGCTGCAATGGAAGCCCCGGGGCT
ACGGCTGAGAAACCTCCCCAAATATTGTAGACTGAGAGGCTGCATGGAGG
CTGAAGAGCCGTGTGCGTGGAGGACAAGGAGGCCGTGCGTGTCGTCATAT
TTTGCATCGTGGGTACGGATGTTCTGACACGAACTGTAGTCTGCTCATAC
GAGTACTGGTGGGAGTATGGTACTCGAGTACGACTGTCCCGTTACTGCAC
AGTGCTGTACAGTGCCTCCCCCCTCCCCCTTTCCCCCCTCCTCTCGTTCC
TCCTCCTCCTCCTCCTACCCTTTCCCTGGCTAGCCAAGGAAGTGCCAGTG
TTGAGGTCTTTTTTGACGTGGCCTGCACCTCGCCCTGTGTTGTTATGTAC
TTTTCTGTTATTACAGTCCAGTACTCGGGAGGGCTGTAGTGAGGCATCAG
TGCAGGCAACGCCGTCCTCCGAGCGCCACCAACACTTCACCTGCCCCCCC
CCCCCCCGCCCGCCCGCCCGCCCGGGCACCGGTTGCTTTGCTTGCACGCC
TGCCCTCTTTTTCTTTGTGGCGCCGCAAGCAGAGAGAAGGCCAAGAACAA
AAACCTACACGGCGGCGCGCTGCTCCATCTCTCCGTGTGCGGTCTCGATT
AGATGCACCTCGCCCCGTGTTGTTACTTATAGTACTTCATACGAGCAGTA
AATTAGAGCGCGCATCACATCGCATCACATCTGATTCACATCACATGTCA
CCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3241250..3246952-

>mRNA_S-ischiensis_contig9.20789.1 ID=mRNA_S-ischiensis_contig9.20789.1|Name=mRNA_S-ischiensis_contig9.20789.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1770bp|location=Sequence derived from alignment at S-ischiensis_contig9:3241250..3246952- (Schizocladia ischiensis KU_0333)
ATGGGCAACAAGGGTTCGACGGGCTCGTCCCACGGCCAGGGTCTGGCTTC
AGACATTAGGGATGCCCTTCCAACGATGCCGGGTTCACAACCGAAGATCA
AGACGGGAAGAAAGATGGGCAACAAGGGTTCGACGGGCTCGTCCCACGGC
CAGGGTCTGGCTTCAGACATTAGGGATGCCCTTCCAACGATGCCGGGTTC
ACAACCGAAGATCAAGACGGGAAGAAAGGTGACTGCCCAGAAGCTGAAGA
CGGCGGGCTCAACGGGGGTGCTGGCCCTGCAGGAGCATGGGCTCAAGGAG
GTCCCGGCCGCGATATTCGAGCTCGTGAACCTACGGGTGACTGCCCAGAA
GCTGAAGACGGCGGGCTCAACGGGGGTGCTGGCCCTGCAGGAGCATGGGC
TCAAGGAGGTCCCGGCCGCGATATTCGAGCTCGTGAACCTACGGACACTA
CACCTGGCGTCGAACGCCCTTCGGATACTGCCGCCCGGGGGGGTGGCGGC
CCTGACGCGGCTCAAGACCCTCCGGCTGGACTCCAATCGCCTGGAGGCGT
TGCCAGACCTGTCCATGCTGACCGCTCTGCAGACACTACACCTGGCGTCG
AACGCCCTTCGGATACTGCCGCCCGGGGGGGTGGCGGCCCTGACGCGGCT
CAAGACCCTCCGGCTGGACTCCAATCGCCTGGAGGCGTTGCCAGACCTGT
CCATGCTGACCGCTCTGCAGGACCTGTCCGCAGACGGGAACTCGCTCACC
GGGCAGGGGGCGCTGGTGGGCCTGCCCGGGGGGCTGTCTAAGCTGAGCCT
GGCCGGGAATAAGCTGGGGGGGTTCCCGGAGGCTGTGCTCGCGGGGCTGC
CAAAGCTGGAGGACCTGTCCGCAGACGGGAACTCGCTCACCGGGCAGGGG
GCGCTGGTGGGCCTGCCCGGGGGGCTGTCTAAGCTGAGCCTGGCCGGGAA
TAAGCTGGGGGGGTTCCCGGAGGCTGTGCTCGCGGGGCTGCCAAAGCTGG
AGGTGCTCAACCTGACCGGGAACAGCATCCACGAAATACCCCCCCTTGAG
GCCGCGCTGCCGTCTCTCGTTGAGTTAACGCTGGACTCCAACGCCATATA
CGTCGTGGGGCCCGCGCTCGCCCTGCTGCCCCGCCTCAAGACCCTCACCC
TACGTGCCAACCGCATCGAGGGCTCGGCCCCGCCGGACGGCCGTCAGGTG
CTCAACCTGACCGGGAACAGCATCCACGAAATACCCCCCCTTGAGGCCGC
GCTGCCGTCTCTCGTTGAGTTAACGCTGGACTCCAACGCCATATACGTCG
TGGGGCCCGCGCTCGCCCTGCTGCCCCGCCTCAAGACCCTCACCCTACGT
GCCAACCGCATCGAGGGCTCGGCCCCGCCGGACGGCCGTCAGTCCCTGGC
ACGAGAGCTGTTTGAGAGCAGCAAGGTGGAGGTGCTCGAGCTGGAGGGCA
ACCCGCTGACCAAACGAGATCTCCTCGACATGGATTGCGTCAACGCCTTC
CTCGAGCGCAGTCCCTGGCACGAGAGCTGTTTGAGAGCAGCAAGGTGGAG
GTGCTCGAGCTGGAGGGCAACCCGCTGACCAAACGAGATCTCCTCGACAT
GGATTGCGTCAACGCCTTCCTCGAGCGCAGAGAGAAGGCCAAGAACAAAA
ACCTACACGGCGGCGCGCTGCTCCATCTCTCCGTGTGCGGTCTCGATTAG
AGAGAAGGCCAAGAACAAAAACCTACACGGCGGCGCGCTGCTCCATCTCT
CCGTGTGCGGTCTCGATTAG
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