mRNA_S-ischiensis_contig9.20786.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20786.1
Unique NamemRNA_S-ischiensis_contig9.20786.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20786.1 vs. uniprot
Match: D8LN51_ECTSI (Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN51_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 5.340e-89
Identity = 142/225 (63.11%), Postives = 167/225 (74.22%), Query Frame = 2 
Query:    2 RSLYMECAPGRCPSLRPGERHCLNTVIQTGSFPETEVFRTLEGRGWGLRLTEGSGGARAGMLLHEYMGEVIDMEECRERL---GLLGQDGRGNNFYFASLDVGLVLDAGPMGSEARFANHSCRPNCQLQKWSVMGETRVVLAALVDMPAGTELTYNYQADTLGGLVRRQRCLCGEKECSGWIGAQVAYLKTDEWAEKAARAVSQPRPHLSAVEALVREGRELGFE 667
            R L MECAPGRCP+LR   ++C N  IQT +FP TEVFRT EGRGWGLRL E   GA AG LLHEY+GEVI M+ECR RL   G  G +G   +FYFASLD  LVLD GPMG EARFANHSC PNC +QKWSV+GETRVVL A  D+  G ELTYNYQADTLGG V RQ+CLCGE +CSG+IG ++  +K +EW  +A++ ++Q +P L  V  L  EGRELG+E
Sbjct:  301 RLLLMECAPGRCPTLRGASKYCNNNAIQTKTFPATEVFRTFEGRGWGLRLAE-ERGAEAGTLLHEYLGEVIMMDECRRRLRKVGRKGVEGSSGDFYFASLDGNLVLDGGPMGGEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQADTLGGFVERQKCLCGEPQCSGFIGGELVAVKAEEWQRRASKVMNQAKPQLEVVRELFHEGRELGYE 524
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BLAST of mRNA_S-ischiensis_contig9.20786.1 vs. uniprot
Match: A0A835Z6U8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U8_9STRA)

HSP 1 Score: 243 bits (621), Expect = 1.740e-70
Identity = 127/238 (53.36%), Postives = 150/238 (63.03%), Query Frame = 2 
Query:    2 RSLYMECAPGRCPSLR---PGERHCLNTVIQTGSFPETEVFRTLEGRGWGLRLTEGSGGARAGMLLHEYMGEVIDMEECRERLGLLGQDGRGNNFYFASLDVGLVLDAGPMGSEARFANHSCRPNCQLQKWSVMGETRVVLAALVDMPAGTELTYNYQADTLGGLVRRQRCLCGEKECSGWIGAQVA---------------YLKTDEWAEKAARAVSQPRPHLSAVEALVREGRELG 661
            R L  EC PGRCP+LR    G R+C N+ IQ   +P TE FRT +GRGWGLRL   +    AG LL EY+GEVI ++EC+ RL  LG+ G+  +FYFASLD  L+LDAGPMG+EARFANHSC PNC+LQKWSVMGETRVV+AA   +  G ELTYNY+ADTL G V RQRCLCG   C G IG  +                        E+A R + Q  P  S   AL+ EGR LG
Sbjct:  180 RRLMQECLPGRCPTLRGLTDGRRYCENSAIQERRYPPTEAFRTSDGRGWGLRLCTTAEPVTAGTLLKEYVGEVISVDECKRRLKQLGKRGKRGDFYFASLDGQLILDAGPMGNEARFANHSCAPNCELQKWSVMGETRVVMAAKRTLQPGEELTYNYRADTLDGCVTRQRCLCGAPRCPGLIGGTLRSAXXXXXXXXXXXXXXXXXXXXRERAVRVLRQRLPRFSEAAALLEEGRALG 417
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BLAST of mRNA_S-ischiensis_contig9.20786.1 vs. uniprot
Match: A0A4D9DD50_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD50_9STRA)

HSP 1 Score: 227 bits (579), Expect = 7.310e-65
Identity = 125/227 (55.07%), Postives = 146/227 (64.32%), Query Frame = 2 
Query:    2 RSLYMECAPGRCPSLRPGERHCLNTVIQTGSFPETEVFRTLEGRGWGLRLTEGSGGARAGMLLHEYMGEVIDMEECRERLGLLGQDGRGNNFYFASLDVGLVLDAGPMGSEARFANHSCRPNCQLQKWSVMGETRVVLAALVDMPAGTELTYNYQADTLGGLVRRQRCLCGEKECSGWIGAQVAYLKTD--EWAEKAARAVSQPRPHLSAVEALVREGRELGFEQEV 676
            R L+MEC  GRCPSLR GE +C N VIQ G FP TEVFRT +GRGW LR  E       G LL EY GEV+ MEE + R+  +     G ++YFA+L+  LVLDAGPMGSEARFANHSC PNC LQKW   GE  ++L A   M AG E+TYNYQ DTL G+  +Q C CG K CSG IG +      D   W E+AA  ++   P L AVEALV+EG E G E EV
Sbjct:  201 RQLFMECPVGRCPSLRDGELYCENMVIQQGQFPATEVFRT-QGRGWALRTREE---VEKGTLLIEYRGEVVTMEEAQTRMRSMSA---GQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRMGAGEEVTYNYQVDTLAGMFGQQACRCGAKNCSGLIGKRPEGKGEDWEGWKERAAACLAMRAPSLEAVEALVQEGEE-GVELEV 419
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BLAST of mRNA_S-ischiensis_contig9.20786.1 vs. uniprot
Match: A0A7R9U2M8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2M8_9STRA)

HSP 1 Score: 182 bits (462), Expect = 6.600e-54
Identity = 101/234 (43.16%), Postives = 131/234 (55.98%), Query Frame = 2 
Query:    2 RSLYMECAPGRCPSLRPG-----------ERHCLNTVIQTGSFPETEVFRTLEGRGWGLRLTEGSGGARAGMLLHEYMGEVIDMEECRERLGLLGQDGRGNNFYFASLDVGLVLDAGPMGSEARFANHSCRPNCQLQKWSVMGETRVVLAALVDMPAGTELTYNYQADTLGGLVRRQRCLCGEKECSGWIGAQVAYLKTDEWAEKAARAVSQPRPHLSAVEALVREGRELGFEQ 670
            R L+MEC  G C SL P              +C N  +Q   FP T+V+ T    G+GLR  E      AG ++ EY+GEVI  EECR RLG   ++    ++YFASL    VLDAGPMGS+ARFANHSC PNC LQ W+V+GE RV L A+ D+ A   L YNY++D L G V  Q C CG   C G IG +V      +W   A R +   R  L +++AL+    +LG ++
Sbjct:   16 RRLFMECPSGACCSLGPALSSGNSQPDTRRANCGNVALQVRQFPATDVYWTKT-CGFGLRALEAF---PAGTIVEEYLGEVITTEECRTRLGTYTEN---QDYYFASLTGPYVLDAGPMGSKARFANHSCSPNCALQVWNVLGEPRVALVAIRDIRANEHLCYNYRSDDLNGEVSLQSCRCGSLNCCGVIGGRVEESDLQKWETDATRCLGLQRAKLESLQALIAHAEQLGVDE 242
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BLAST of mRNA_S-ischiensis_contig9.20786.1 vs. uniprot
Match: W7TZX2_9STRA (Histone-lysine n-h3 lysine-36 and h4 lysine-20 specific n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZX2_9STRA)

HSP 1 Score: 164 bits (415), Expect = 3.980e-48
Identity = 84/150 (56.00%), Postives = 99/150 (66.00%), Query Frame = 2 
Query:   77 VIQTGSFPETEVFRTLEGRGWGLRLTEGSGGARAGMLLHEYMGEVIDMEECRERLGLLGQDGRGNNFYFASLDVGLVLDAGPMGSEARFANHSCRPNCQLQKWSVMGETRVVLAALVDMPAGTELTYNYQADTLGGLVRRQRCLCGEKEC 526
            VIQ G FP TEVFRT +GRGW LR  E       G LL EY GEV+ MEE + R+  +     G ++YFA+L+  LVLDAGPMGSEARFANHSC PNC LQKW   GE  ++L A   + AG E+TYNYQ DTL G+  +Q C CG K C
Sbjct:    2 VIQQGKFPATEVFRT-QGRGWALRTREE---VEKGTLLIEYRGEVVTMEEAQTRMRSMSA---GQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRLGAGEEVTYNYQVDTLAGMFGKQACRCGAKNC 144
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BLAST of mRNA_S-ischiensis_contig9.20786.1 vs. uniprot
Match: A0A3B4AEI0_9GOBI (Uncharacterized protein n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4AEI0_9GOBI)

HSP 1 Score: 169 bits (429), Expect = 9.570e-46
Identity = 89/182 (48.90%), Postives = 114/182 (62.64%), Query Frame = 2 
Query:    2 RSLYMECAPGRCPSLRPGERHCLNTVIQTGSFPETEVFRTLEGRGWGLRLTEGSGGARAGMLLHEYMGEVIDMEECRERLGLLGQDGRGNNFYFASLDVGLVLDAGPMGSEARFANHSCRPNCQLQKWSVMGETRVVLAALVDMPAGTELTYNYQADTLGGLVRRQRCLCGEKECSGWIGAQ 547
            R L  EC P  CP+   GE+ CLN       +   E+FRTL  RGWGLR +      + G  + EY+GEVID EECR R+    ++  GN FY  +LD   ++DAGP G+EARF NHSCRPNC+ QKW+V G+TRV L AL D+PAGTELT+NY  + LG    +  C CG   CSG++G +
Sbjct:  266 RMLLYECHPQVCPA---GEK-CLNQAFTKREYSSVEIFRTLS-RGWGLRCSHD---IKKGQFVSEYVGEVIDEEECRSRIRDAQENDIGN-FYMLTLDKDRIIDAGPKGNEARFMNHSCRPNCETQKWTVSGDTRVGLFALEDIPAGTELTFNYNLECLGN--GKTVCKCGAPNCSGFLGVR 436
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BLAST of mRNA_S-ischiensis_contig9.20786.1 vs. uniprot
Match: A0A8B9JRW4_ASTMX (Uncharacterized protein n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9JRW4_ASTMX)

HSP 1 Score: 166 bits (421), Expect = 1.850e-45
Identity = 90/182 (49.45%), Postives = 115/182 (63.19%), Query Frame = 2 
Query:    2 RSLYMECAPGRCPSLRPGERHCLNTVIQTGSFPETEVFRTLEGRGWGLRLTEGSGGARAGMLLHEYMGEVIDMEECRERLGLLGQDGRGNNFYFASLDVGLVLDAGPMGSEARFANHSCRPNCQLQKWSVMGETRVVLAALVDMPAGTELTYNYQADTLGGLVRRQRCLCGEKECSGWIGAQ 547
            R L  EC P  CP+   GE+ C N       + E E+FRTL  RGWGLR   G    R G  ++EY+GEVID EECR R+    ++  GN FY  +LD   ++DAGP G+EARF NHSC+PNC+ QKW+V G+TRV L ALVD+ AGTELT+NY  + LG    +  C CG   CSG++G +
Sbjct:  130 RMLLYECNPQVCPA---GEK-CQNQRFLKREYSEVEIFRTLS-RGWGLR---GCHDIRKGDFVNEYVGEVIDEEECRARIRQAQENDIGN-FYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVNGDTRVGLFALVDISAGTELTFNYNLECLGN--GKTVCKCGAPNCSGFLGVR 300
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BLAST of mRNA_S-ischiensis_contig9.20786.1 vs. uniprot
Match: A0A671MQQ9_9TELE (Nuclear receptor binding SET domain protein 1b n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671MQQ9_9TELE)

HSP 1 Score: 167 bits (422), Expect = 2.620e-45
Identity = 88/182 (48.35%), Postives = 114/182 (62.64%), Query Frame = 2 
Query:    2 RSLYMECAPGRCPSLRPGERHCLNTVIQTGSFPETEVFRTLEGRGWGLRLTEGSGGARAGMLLHEYMGEVIDMEECRERLGLLGQDGRGNNFYFASLDVGLVLDAGPMGSEARFANHSCRPNCQLQKWSVMGETRVVLAALVDMPAGTELTYNYQADTLGGLVRRQRCLCGEKECSGWIGAQ 547
            R L  EC P  CP+   GER C N       + + E+FRTL  RGWGLR        + G  ++EY+GEVID EECR R+    ++  GN FY  +LD   ++DAGP G+EARF NHSC+PNC+ QKW+V G+TRV L AL D+PAGTELT+NY  + LG    +  C CG   CSG++G +
Sbjct:  268 RMLLYECHPQVCPA---GER-CQNQCFTKRQYCQVEIFRTLS-RGWGLRCVHD---IKKGGFVNEYVGEVIDEEECRARIKHAQENNIGN-FYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVNGDTRVGLFALTDIPAGTELTFNYNLECLGN--GKTVCKCGASNCSGFLGVR 438
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BLAST of mRNA_S-ischiensis_contig9.20786.1 vs. uniprot
Match: A0A671RRU7_9TELE (Nuclear receptor binding SET domain protein 1b n=12 Tax=Cyprininae TaxID=2743694 RepID=A0A671RRU7_9TELE)

HSP 1 Score: 168 bits (425), Expect = 3.400e-45
Identity = 89/182 (48.90%), Postives = 114/182 (62.64%), Query Frame = 2 
Query:    2 RSLYMECAPGRCPSLRPGERHCLNTVIQTGSFPETEVFRTLEGRGWGLRLTEGSGGARAGMLLHEYMGEVIDMEECRERLGLLGQDGRGNNFYFASLDVGLVLDAGPMGSEARFANHSCRPNCQLQKWSVMGETRVVLAALVDMPAGTELTYNYQADTLGGLVRRQRCLCGEKECSGWIGAQ 547
            R L  EC P  CP+   GER C N       F + E+FRTL  RGWGLR        + G  ++EY+GEVID EECR R+    ++  GN FY  +LD   ++DAGP G+EARF NHSC+PNC+ QKW+V G+TRV L AL D+PAGTELT+NY  + LG    +  C CG   CSG++G +
Sbjct:  268 RMLLYECHPQVCPA---GER-CQNQCFTKRQFCQVEIFRTLS-RGWGLRCVHD---IKKGGFVNEYVGEVIDEEECRARIKHAQENNIGN-FYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVNGDTRVGLFALTDIPAGTELTFNYNLECLGN--GKTVCKCGASNCSGFLGVR 438
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BLAST of mRNA_S-ischiensis_contig9.20786.1 vs. uniprot
Match: A0A665XAJ2_ECHNA (Nuclear receptor binding SET domain protein 1b n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A665XAJ2_ECHNA)

HSP 1 Score: 167 bits (424), Expect = 3.890e-45
Identity = 89/182 (48.90%), Postives = 113/182 (62.09%), Query Frame = 2 
Query:    2 RSLYMECAPGRCPSLRPGERHCLNTVIQTGSFPETEVFRTLEGRGWGLRLTEGSGGARAGMLLHEYMGEVIDMEECRERLGLLGQDGRGNNFYFASLDVGLVLDAGPMGSEARFANHSCRPNCQLQKWSVMGETRVVLAALVDMPAGTELTYNYQADTLGGLVRRQRCLCGEKECSGWIGAQ 547
            R L  EC P  CP+   GER CLN       + + E+FRTL  RGWGLR        + G  + EY+GEVID EECR R+    Q+    NFY  +LD   ++DAGP G+EARF NHSC+PNC+ QKW+V G+TRV L ALVD+ AGTELT+NY  + LG    +  C CG   CSG++G +
Sbjct:  270 RMLLYECHPQVCPA---GER-CLNQAFTKRQYSQVEIFRTLS-RGWGLRCVHD---IKKGQFVSEYVGEVIDEEECRSRIRH-AQENDICNFYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVSGDTRVGLFALVDVAAGTELTFNYNLECLGN--GKTVCKCGAPNCSGFLGVR 440
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN51_ECTSI5.340e-8963.11Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A835Z6U8_9STRA1.740e-7053.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DD50_9STRA7.310e-6555.07Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7R9U2M8_9STRA6.600e-5443.16Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
W7TZX2_9STRA3.980e-4856.00Histone-lysine n-h3 lysine-36 and h4 lysine-20 spe... [more]
A0A3B4AEI0_9GOBI9.570e-4648.90Uncharacterized protein n=1 Tax=Periophthalmus mag... [more]
A0A8B9JRW4_ASTMX1.850e-4549.45Uncharacterized protein n=2 Tax=Astyanax mexicanus... [more]
A0A671MQQ9_9TELE2.620e-4548.35Nuclear receptor binding SET domain protein 1b n=1... [more]
A0A671RRU7_9TELE3.400e-4548.90Nuclear receptor binding SET domain protein 1b n=1... [more]
A0A665XAJ2_ECHNA3.890e-4548.90Nuclear receptor binding SET domain protein 1b n=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3206868..3211807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.5
Seed ortholog evalue8.3e-77
Seed eggNOG ortholog2880.D8LN51
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101,ko:K07117,ko:K11423,ko:K11424,ko:K11728
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko05202,map00310,map05202
GOsGO:0000003,GO:0000228,GO:0000803,GO:0000805,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007530,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009892,GO:0009987,GO:0010452,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018992,GO:0019222,GO:0019538,GO:0022414,GO:0030849,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0036211,GO:0040029,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046975,GO:0048519,GO:0048856,GO:0050789,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1081@2759,KOG1632@1,KOG1632@2759
Ec32 ortholog descriptionZinc finger and SET domain protein
Ec32 orthologEc-05_003500.1
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons5
Model size683
Cds size669
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20786.1prot_S-ischiensis_contig9.20786.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3206868..3211794 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817401.9425828-CDS-S-ischiensis_contig9:3206867..32070021622817401.9425828-CDS-S-ischiensis_contig9:3206867..3207002Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3206868..3207002 -
1695741087.3701293-CDS-S-ischiensis_contig9:3206867..32070021695741087.3701293-CDS-S-ischiensis_contig9:3206867..3207002Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3206868..3207002 -
1622817401.9534557-CDS-S-ischiensis_contig9:3207416..32074971622817401.9534557-CDS-S-ischiensis_contig9:3207416..3207497Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3207417..3207497 -
1695741087.393902-CDS-S-ischiensis_contig9:3207416..32074971695741087.393902-CDS-S-ischiensis_contig9:3207416..3207497Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3207417..3207497 -
1622817401.9660232-CDS-S-ischiensis_contig9:3207884..32079711622817401.9660232-CDS-S-ischiensis_contig9:3207884..3207971Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3207885..3207971 -
1695741087.4080799-CDS-S-ischiensis_contig9:3207884..32079711695741087.4080799-CDS-S-ischiensis_contig9:3207884..3207971Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3207885..3207971 -
1622817401.9767442-CDS-S-ischiensis_contig9:3209306..32094771622817401.9767442-CDS-S-ischiensis_contig9:3209306..3209477Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3209307..3209477 -
1695741087.4215028-CDS-S-ischiensis_contig9:3209306..32094771695741087.4215028-CDS-S-ischiensis_contig9:3209306..3209477Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3209307..3209477 -
1622817401.9897077-CDS-S-ischiensis_contig9:3211599..32117941622817401.9897077-CDS-S-ischiensis_contig9:3211599..3211794Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3211600..3211794 -
1695741087.4334087-CDS-S-ischiensis_contig9:3211599..32117941695741087.4334087-CDS-S-ischiensis_contig9:3211599..3211794Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3211600..3211794 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817402.0008967-UTR-S-ischiensis_contig9:3211794..32118071622817402.0008967-UTR-S-ischiensis_contig9:3211794..3211807Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3211795..3211807 -
1695741087.4524682-UTR-S-ischiensis_contig9:3211794..32118071695741087.4524682-UTR-S-ischiensis_contig9:3211794..3211807Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3211795..3211807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20786.1

>prot_S-ischiensis_contig9.20786.1 ID=prot_S-ischiensis_contig9.20786.1|Name=mRNA_S-ischiensis_contig9.20786.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=223bp
MECAPGRCPSLRPGERHCLNTVIQTGSFPETEVFRTLEGRGWGLRLTEGS
GGARAGMLLHEYMGEVIDMEECRERLGLLGQDGRGNNFYFASLDVGLVLD
AGPMGSEARFANHSCRPNCQLQKWSVMGETRVVLAALVDMPAGTELTYNY
QADTLGGLVRRQRCLCGEKECSGWIGAQVAYLKTDEWAEKAARAVSQPRP
HLSAVEALVREGRELGFEQEVEE
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mRNA from alignment at S-ischiensis_contig9:3206868..3211807-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20786.1 ID=mRNA_S-ischiensis_contig9.20786.1|Name=mRNA_S-ischiensis_contig9.20786.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4940bp|location=Sequence derived from alignment at S-ischiensis_contig9:3206868..3211807- (Schizocladia ischiensis KU_0333)
CAGGAGCCTCTACATGGAGTGCGCGCCGGGGCGGTGCCCGAGCCTCCGCC
CCGGGGAGCGCCACTGCCTCAACACTGTCATCCAGACCGGCTCTTTCCCG
GAGACGGAGGTCTTCCGCACCTTGGAAGGGCGGGGCTGGGGCCTCCGCCT
CACTGAGGGCTCGGGCGGGGCCCGGGCAGGGATGCTGCTTCACGAGTACA
TGGGAGAGGTGTGTGCGTGTGTGCGTGCGTGTGTGCGTGTGTGTGTGTGT
GTGCATGTGTGTGTGCGAGCGCACGTGTGTCCTGTGCGTGTGTGTGCGCG
CACGTGTGTCATGCGCACGTGTGTGCGTGTGCGCGTGCACGTGCCCGTGT
GCATCCGAGTGTGTGTTTGTTTGGGGGGCGGAGGGGCGGGGGCTAGGGGC
AGTGGCGCTGCTACTCGGAAAGCTGTTGCATCGGCGTATGGGACTCCGCA
GCCGATTTTTCGGGGAAGAATTTCTCACGGACCACCTGTCGGATGCACAT
TAACCCTTTTACCCCTGGGGTCCGTATAGTCATAGGGTTTTAGTGTGTAG
GTCCCATTTAGCCGGGACAAAAGGGTTAAAACTCCTCAGACTGATCGGTC
CTCCAGGGGTGGGCCACAGGGGATATTCCGGGCGAATGGGACCACAGGGG
CCTCGGCTATGTAGGAATACCTGTACCAGTACATACTTCGAAGTGTATAT
ATATGTACTCACGTGGTGCTTGCCGTAGTCCCGAGACCATTGACCCCGCG
GCTCGTTGGAGGCATATGTACTCTACTCACGTGGTGCTTGCCGTAGTCCC
GAGACCATTGACCCCGCGCCTCGTTGGAGGCATGTGTACTCTACTCATGT
GCTTGCCGTAGTCCCCAGACCATTGACCACGCGCCTCATTGGAGGCTTGT
GTACTCTACTCACGTTGTGCTTGCCGTAGTCCCGAGACCATTGACCACGC
GCCTCGTTGGAGGCATATGTACTCTACTCACGTTGTGCTTGCCGTAGTCC
CGAGACCATTGACCGCGCGCCTCGATCAAGACGGAGCAGAAGGATATCAT
TCTCTCCGGCCGAAAGTCGGGCTTGGGTGCTGGTCCAGGGCGTCGATGTT
AATGGGCGATCTTGGTGCTTTCATTGCTCGGAGGTATGTAAAATTCTACT
AAATGTCTTTCTCCCCCCCGTGCTCTCTCTCTCTGTATGTCTCCGTCGGG
TGATCTTGTTCTTTGAAGCGCCTGGAGGTACGCAAAAGTACATAAAGTCC
CTCTCCCCCCGTCCTCTCTTTGCACTTTCAAGCACTCGGAGGCAGGGAGA
GTCTCTCTTTGTCTGTCCCCCCCCCTCTCCTCCCTCCCTCCTCCCTCTCT
CTCCCCCCCCCTCCCTACCTCCCTCTCTCTCCCTCCCTCTCCCCCTGTCC
CTCTTCCTCTCTGACTCAATCTCTCCTCTCTCACTCACTTACTCACACAC
CTCCCTCTCCCCCTGTCCCTCTTCCTCTCTGACTCAATCTCTCCTCTCTC
ACTCACTTACTCACACACGCCCGTCTCCCTCTCTCCCTCTCTCTCCCCCC
CCTCCCTACCTCCATCCCTCTCTCTCCCTCCCTCCCCCCCTCCCTCTCTG
TCTCAATCTATCCCCCCTCTCTCACTCACTTACTCACACACGCCCGTCTC
CCTCTCTCCCCCTCTCTCCCCCCCCTCCCTACCTCCATCCCTCTCTCTCC
CTCCCTCCCTCCCTCCGTCTCTGTCTCACTCTATCTCTCCTCTCTCGCTC
ACTTACTCACGCACGCCTCCCTCTCCCCCTCCCTCTCTGTCTCACTATCT
CTTCTCACTTACTCACATACGCCCGCACGCCGGGTGATTGACATGGAGGA
CTCTCTCCCTCCCTCTCCCCCTCTCCCGCTCCCTCCCTGTCTCACTCTAT
CTCTCCTCTCTCCCTCGCTTACTGACAGACACCCGCTCTCTGTCTCAAAT
CTCTCCTCTCCCTCCCTCACTCGCACACACCTCCCCATCTCGGTCTCACT
CTATCTCTCCTCACTCACTCACACACGCCCGCGCCAGGTATTTGACATGG
ATGACTCTCTCCCTCCCTCTTCCTCTCCCTCTCTGTCTCACTCTATCTCT
CCTCTCTCACGCGCTTCTCGCACACGCCTGCACCAGGTGATTGATATGGA
GGACTCTCTCTCTGTCCCTCCCTCTCCCCCTCTCCCCATCCCTCTCTGTC
TCACTCTATCTCTCCTCTCTCACTCACGTACACACTCTCCCTCCCTCCCT
CCCTCTCCCCCTCTCCCCCTCCCTCTCCTCCTCCCTCGACATCTCCTCTC
TCCCTCACTACTCACACACACCCGCGCCAGGTGATTGACATGGAGGAGTG
CCGCGAGCGCCTGGGCCTGCTGGGCCAGGACGGCCGCGGGAACAACTTCT
ACTTTGCCTCCCTGGACGTGGGCCTGGTGCTCGACGCCGGCCCCATGGGC
AGCGAGGCGCGCTTTGCCAACCACAGCTGCCGCCCAAACTGCCAGCTGCA
GGCAAGAACTTGTAGGTACTTACCGTACGGCAGTACTGTACTGTAGGTGG
TAGAGCTCTAGTTTGCCTCCCTGGACGTGGGCCTGGTGCTGGATGCCGGC
CCCATGGACAGCGAGGCGCGCTTTGCCAACCACAGCTGCCGCCCAAACTG
CGAGCTGCAGGCAAGAACGTGCACTTACAGTATTTGTACGGCTGTGCTGT
GCTGTGGGTGATAGAGCTGTGGACGGGCACGGCGGGTCGGTCAGAATGGC
AGGTAGCCGGCAGTGATTCACATAAATTGTGACGAGGTAGAGCTACGATC
GCACGTGTGTGAGATTGAGTGTTCTCGTATTACGGTAGTGGTTTGTATCC
CATTTCAGAATTGAGTGTTCTCGTATTAGTGATTATCACATCAAAGAGTT
GAAAACATAGAGGGCAAAGAAAAAAAAAGTACGCTGTACTGTAGGTGGTA
GAGCTGTGAACGGCCACGGCCGGTCGGTCAAAATGGTACTTCGGTAACCG
GCATCGTCGCAACCGGTTCGGTTCGGCCGGTTGTTTTAGTTAGCGGCTGT
TTTTTTCGCGAATACTGCTCTATTTCGGCCGAAACCGGCGATATTTAATG
GCAATGTCACAGTCCAACGGCTATTATCGAACGTCGAAATATGCATTTTT
CAGAGAAGAAAAGAACGGCGGACCGGGCAAGGCTCCGGCCAGTTAAACCG
GTAAGGCCGGTTGACCGGAACCGACCGGCAAGACAAAACGGCTCCGGTTC
ACAGCTCTAGCTTAGTGGTCGGTCACCTTGTGGTCACTGTAGGCCAGCGT
CCCATTGACAGCTACACGCACCCTCTTCCAAGTTGGGGGCATTGTGTTGT
CTACTCCTTCCGAAGTACTTATAGGTGGCATTGCGTGCGACACATCGGTT
GTGAGTGTGCTCGTACTTGAGCGCATTTCGTGTGGGGTGCGCGTGTCTGT
GTTGTGTTAATAACATGGCACCGGCGGCATGTGTGCGGCGGCGGCTTTTG
CTGGCAAAGCGTGGAGCCACGTGTGTGTGCTTGCGTGCGCGTGTATGTGT
GTGTGTGGTACTGATTGCCTATATGTGGGGACACCGCTTTCATACCGGAA
GTGTGCCCATGCTGATGATGACATTGCGCGGCACCGCGTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCGCGCTCTCTCTCCCTCTCGCTCTC
TCTCCCCCCCCCCCCCTCTCTCTCTCTTCTCCCCCCCCCCCGCCCTCCTT
CCTGCCTGTCTCTCCCTCTCCCCCTCCCTTGTCCAGAAATGGAGCGTGAT
GGGGGAGACACGCGTGGTGCTCGCGGCTCTGGTGGACATGCCGGCCGGCA
CGGAACTCACCTACAACTACCAGGTGGGCTTTTTTTCTCCCCCATCCTTG
TTCTTAGTTCCTGGATGTGATGATCACTAATATAAGAACCCTCAATTCTT
AAATGGGACAACTACTAATACGAGAACAGTCAATCTCACACACGTGCGTT
GTGCCTCGTTACAATTTACTGGGAAGTATATGAATCACCAGGTGGGCCTG
GCCGCAGGGAGGCGTTCGTGCGGTGGAGATTAGATGCAGAGCACATGCAT
ATTTCGAAGGGTCAGTGGCTCAACAGCAATTTGTGTGCTTCATTCGCTAA
CTGCATGGGAAACGCCTGACCCCCGGCCCTGATCGCCCCCCGGGCGACAC
GTTTGGTGCCGCGTGCCGCGTTTTTTTGTTATTCTTGTTTTTGTTGTTGT
TTTTGTCCAGGCGGACACCTTGGGAGGGCTGGTGCGGCGCCAGCGCTGCC
TGTGCGGCGAGAAGGAGTGCTCGGGGTGGATTGGCGCGCAGGTGTGTCCC
TTCCTTCTTGTCTCCCTCCGTCCCTTCCCTCCTTCCTCCCTCCCTCCCTC
CCTTCCTTGCTTCCTTCCTTCCTTCCTCCCTCCCTTCCTTCCTTCCTTCC
TTCCCTCCCTCCCTCCTCCCAGCCTTCCCTCCCTCCCTCCCGCCCGCCGT
TCGTTCCCCTTGCCCCCCCCCCCTGTGCCCCAACCCCCCCCCCCCCCCCT
CCTCCACGCCGTATCTTCCCCACCATGTTTTTTGCATCCCAACTCCCTAT
TCACCTCCTCCGTTTTCTTATCCAAACTCCCTACATATTTACCTCCTCCG
TTTTTTCATCCCAATTCCCTATTTACCTCCTCCGTTCCCCTTATTTACCC
AACCCAAACTGTCCCCAAAACCTCCCTTCCCTCCCGCCCCCCCCGCCTTC
CCCAGGTGGCGTATCTGAAGACGGATGAGTGGGCGGAGAAGGCCGCGCGT
GCGGTGTCCCAGCCCCGCCCGCACCTCTCGGCCGTGGAAGCCCTGGTGCG
GGAGGGGAGGGAGCTGGGCTTTGAGCAGGAGGTGGAGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3206868..3211807-

>mRNA_S-ischiensis_contig9.20786.1 ID=mRNA_S-ischiensis_contig9.20786.1|Name=mRNA_S-ischiensis_contig9.20786.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1338bp|location=Sequence derived from alignment at S-ischiensis_contig9:3206868..3211807- (Schizocladia ischiensis KU_0333)
ATGGAGTGCGCGCCGGGGCGGTGCCCGAGCCTCCGCCCCGGGGAGCGCCA
CTGCCTCAACACTGTCATCCAGACCGGCTCTTTCCCGGAGACGGAGGTCT
TCCGCACCTTGGAAGGGCGGGGCTGGGGCCTCCGCCTCACTGAGGGCTCG
GGCGGGGCCCGGGCAGGGATGCTGCTTCACGAGTACATGGGAGAGATGGA
GTGCGCGCCGGGGCGGTGCCCGAGCCTCCGCCCCGGGGAGCGCCACTGCC
TCAACACTGTCATCCAGACCGGCTCTTTCCCGGAGACGGAGGTCTTCCGC
ACCTTGGAAGGGCGGGGCTGGGGCCTCCGCCTCACTGAGGGCTCGGGCGG
GGCCCGGGCAGGGATGCTGCTTCACGAGTACATGGGAGAGGTGATTGACA
TGGAGGAGTGCCGCGAGCGCCTGGGCCTGCTGGGCCAGGACGGCCGCGGG
AACAACTTCTACTTTGCCTCCCTGGACGTGGGCCTGGTGCTCGACGCCGG
CCCCATGGGCAGCGAGGCGCGCTTTGCCAACCACAGCTGCCGCCCAAACT
GCCAGCTGCAGGTGATTGACATGGAGGAGTGCCGCGAGCGCCTGGGCCTG
CTGGGCCAGGACGGCCGCGGGAACAACTTCTACTTTGCCTCCCTGGACGT
GGGCCTGGTGCTCGACGCCGGCCCCATGGGCAGCGAGGCGCGCTTTGCCA
ACCACAGCTGCCGCCCAAACTGCCAGCTGCAGAAATGGAGCGTGATGGGG
GAGACACGCGTGGTGCTCGCGGCTCTGGTGGACATGCCGGCCGGCACGGA
ACTCACCTACAACTACCAGAAATGGAGCGTGATGGGGGAGACACGCGTGG
TGCTCGCGGCTCTGGTGGACATGCCGGCCGGCACGGAACTCACCTACAAC
TACCAGGCGGACACCTTGGGAGGGCTGGTGCGGCGCCAGCGCTGCCTGTG
CGGCGAGAAGGAGTGCTCGGGGTGGATTGGCGCGCAGGCGGACACCTTGG
GAGGGCTGGTGCGGCGCCAGCGCTGCCTGTGCGGCGAGAAGGAGTGCTCG
GGGTGGATTGGCGCGCAGGTGGCGTATCTGAAGACGGATGAGTGGGCGGA
GAAGGCCGCGCGTGCGGTGTCCCAGCCCCGCCCGCACCTCTCGGCCGTGG
AAGCCCTGGTGCGGGAGGGGAGGGAGCTGGGCTTTGAGCAGGAGGTGGAG
GAGGTGGCGTATCTGAAGACGGATGAGTGGGCGGAGAAGGCCGCGCGTGC
GGTGTCCCAGCCCCGCCCGCACCTCTCGGCCGTGGAAGCCCTGGTGCGGG
AGGGGAGGGAGCTGGGCTTTGAGCAGGAGGTGGAGGAG
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