mRNA_S-ischiensis_contig9.20783.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20783.1
Unique NamemRNA_S-ischiensis_contig9.20783.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20783.1 vs. uniprot
Match: D7FS98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS98_ECTSI)

HSP 1 Score: 299 bits (765), Expect = 7.490e-86
Identity = 189/431 (43.85%), Postives = 235/431 (54.52%), Query Frame = 2 
Query:  155 TCFARAMDAGGIMLSPQELRLVCDRYRVPGPKSELVDYQKFCDQVNKVFTIKGLERVPSKTVRRSLQDMAPLRLGLDNPTLTPEERACMADMLDEMRRNVRDKALVVKMLFKGFDHDMDGCVSGEQLLRVVSCHGLLGPDKASDFSIYRRGGEKYGHVLVKAYAARVHGPGLEAMGCSYQALHQQISEPGPLGLPVKEARPAFMTDSLTEAERVAGGGANPDPGKRLEDLLVQEAVACRIEVQEYLVAQAGAAATRSQPGGGGRRSLVSREDFQRALRGLWSTHFTEAQANALAARRALVLPPGEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLTAEEEAEVERFVSSVRSRVKRERALLQPSFTEFDRRNEEAFVNYREFLRHADVSARTGTKAFIDDFVMGR 1447
            T F RAM+A GI L+ +EL L+ +RYR+P   S L+DYQKFCDQ NKVFT K LER P KT+ RSLQ   P  LG  NPTLTP E+   ADML+EMRR VRD +L+VK LF  FD    GCV+GEQ LR +SCHGLL  DK  D        E+YGHVLVKA+  RV GPGLEA+  +Y+ LH Q+         VKE +PA + D   E    + G  N   G+RLE LLV+EAVA RIEV +YL +  G     ++  G G   L SRE FQ+ LRGLW  HFT+ +A ALA R     PP +                                                      RL+A+E  +VE  +  +R R+ RER  L+PSF        + FV Y+EFL+  D    T T+A+ID+FV GR
Sbjct:   88 TTFVRAMNASGIGLTQEELGLLINRYRLPAG-SGLIDYQKFCDQSNKVFTSKHLERTPGKTLIRSLQSTQPAILGAGNPTLTPTEKLRTADMLEEMRRKVRDGSLIVKNLFNQFDLHTRGCVTGEQFLRAISCHGLLSADKVLDM-------ERYGHVLVKAFTERVDGPGLEAVVVNYKTLHDQLMVQDCWENHVKEPKPALLIDGHPEEYNNSNGDENE--GERLERLLVEEAVARRIEVMDYLSSAVGGEVAGTKHPGMGSGGLCSRERFQQLLRGLWRAHFTDEEAEALADRYR---PPVDYASARMNTFVDLASFAKQLCTRVLAARKTAAKATGAGTRPGGGGVVVPP-----RLSAKEAKDVENVILDIRGRISRERITLKPSF--------KGFVAYKEFLQDVDAPLETETQAYIDNFVFGR 492
[Close]
BLAST of mRNA_S-ischiensis_contig9.20783.1 vs. uniprot
Match: A0A6H5KVF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF2_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 2.520e-78
Identity = 157/305 (51.48%), Postives = 199/305 (65.25%), Query Frame = 3 
Query: 1503 VVGSARPLQAASLSGVRPQLLGLESDRSCDQVVRELRQHVLRDRIRLSEPFRDFDRLGHGTCTQAQLARSMKTMGHPLTDGELAAVGRRYRSLHPSDVSASDGTPLLRYKAFVEDVDAVFTVHGLEKRPQTTEVRREVRAARDTEAELRGDLQAGVEPLTGEEERVLAKFLRELAMQV------------------------------NKESLNLPSIFVDFDRFNRGHIPEASMERALGGARLLPPAPVFQTLARKFRETALGGGASEVNYRAFLGAVALAQDPLNTPRDVPNATKFRAIRREG 2327
            ++ SA  L + +L G     +G    R CD ++R++R+   R+R+R+ + F+DFDRL HGTCTQAQLAR MKT+ HPL+D ELAAV  RY+S  P + S  DGTPL+ YK  V D++AVFTV  LEK+   T V + VR AR  +  LRG+  + +E LT EE+R+LAKFLRELAM+V                              NK+SL LPS+F D+DRFN G I EA MERALGGA LLPP P+F+T+ +KFRE +      EVNY+AFL AV LAQDPL TPRD+PNATKFRA+R EG
Sbjct:  421 ILRSAASLTSEALMGRGG--VGFNPARDCDAIIRDVRRTTARERVRMMDLFKDFDRLQHGTCTQAQLARVMKTLDHPLSDRELAAVCERYKSNAPRECSPGDGTPLIFYKNLVSDIEAVFTVEELEKKSAVTNVEQAVREARGVDRRLRGE-SSRLEELTEEEQRMLAKFLRELAMKVALLAAIGASLCALCLFFAFAWLAGASRPRVNKDSLCLPSLFTDYDRFNVGDITEAGMERALGGACLLPPEPIFRTIVKKFREHSRRSSGGEVNYKAFLAAVELAQDPLATPRDLPNATKFRAMRAEG 722
[Close]
BLAST of mRNA_S-ischiensis_contig9.20783.1 vs. uniprot
Match: A0A1V9Z1F7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1F7_9STRA)

HSP 1 Score: 120 bits (300), Expect = 3.820e-24
Identity = 85/251 (33.86%), Postives = 131/251 (52.19%), Query Frame = 3 
Query: 1575 SDRSCDQVVRELRQHVLRDRIRLSEPFRDFDRLGHGTCTQAQLARSMKTMGHPLTDGELAAVGRRYRSLHPSDVSASDGTPLLRYKAFVEDVDAVFTVHGLEKRPQTTEVRREVRAARDTEAELRGDLQAGVEPLTGEEERVLAKFLRELAMQVNKESLNLPSIFVDFDRFNRGHIPEASMERALGGARLLPPA-PVFQTLARKFRE--TALGGGAS---EVNYRAFLGAVALAQDPLNTPRDVPNATKFR 2309
            + R+   ++R ++Q   RDR+R+ E FRDFDRL  G  T+ Q    +   G  L+  +L  +   +      DV   +G P++ +  FV++++AVFTV GLE+ P T ++++ + AA+  +A +          L+ E+E  +   LR +  ++  + L L   F DFD  N+G I     ER L   +LLPPA P+ + L  KF E   A   G S   +VNYRAFL A+AL       P  VP A ++R
Sbjct:  486 TQRTLPMLLRYIKQKAKRDRLRVEEYFRDFDRLRKGKITRMQFGGGLNAAGFVLSSVDLDLIASEFPFAEERDV---EGAPMVAWTRFVDEIEAVFTVKGLEREP-TRDIQQSIEAAQQVDAIVDT-------ALSPEDEAAIMALLRSMQARIANKRLELKPSFEDFDPSNQGFISHTKFERVLSVFQLLPPAAPIARLLCIKFSERGNAPKPGVSSTCDVNYRAFLHALALLARA--DPSHVPGAREYR 723
[Close]
BLAST of mRNA_S-ischiensis_contig9.20783.1 vs. uniprot
Match: A0A6G0W6E8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6E8_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.570e-23
Identity = 85/253 (33.60%), Postives = 134/253 (52.96%), Query Frame = 3 
Query: 1572 ESDRSCDQVVRELRQHVLRDRIRLSEPFRDFDRLGHGTCTQAQLARSMKTMGHPLTDGELAAVGRRYRSLHPSDVSASDGTPLLRYKAFVEDVDAVFTVHGLEKRPQTTEVRREVRAARDTEAELRGDLQAGVEPLTGEEERVLAKFLRELAMQVNKESLNLPSIFVDFDRFNRGHIPEASMERALGGARLLPP-APVFQTLARKFRE--TALGGGAS---EVNYRAFLGAVALAQDPLNTPRDVPNATKFRA 2312
            E+ R+   V+R L+Q   RDRIR+ E FRDFDRL  G  T++Q A  + T G+ L+  +L  +   ++     DV   +G  ++ +  F +++D+VFTV GLE+ P        +R      + +  D       L+  +E V+   LRE+A+++ ++ L++   F DFD  N+G +  +  ER L    L PP A   + L  KF E   A   GA+   +VNYRAFL A++  Q+  +T   +P A +FRA
Sbjct:  490 ETQRTLPMVLRYLKQKAKRDRIRIDEYFRDFDRLRKGKITRSQFASGLNTAGYVLSKSDLDLLADEFQF---DDVDI-EGHSMVAWCRFADEIDSVFTVKGLERDPT------HLRMDNSESSNVTSD-----STLSAADEAVVLTTLREMAVKIQQQRLDIKPPFEDFDPANQGFVSASKFERVLSVVNLYPPQASTVRLLMIKFSERGNAPNVGATSACDVNYRAFLSALSAIQNSQDTT-SLPGAREFRA 726
[Close]
BLAST of mRNA_S-ischiensis_contig9.20783.1 vs. uniprot
Match: A0A8K1CS62_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS62_PYTOL)

HSP 1 Score: 115 bits (289), Expect = 8.190e-23
Identity = 88/257 (34.24%), Postives = 130/257 (50.58%), Query Frame = 3 
Query: 1581 RSCDQVVRELRQHVLRDRIRLSEPFRDFDRLGHGTCTQAQLARSMKTMGHPLTDGELAAVGRRYRSLHPSDVSASDGTPLLRYKAFVEDVDAVFTVHGLEKRPQTTEVRREVRAARDTEAELRGDLQAGVEP---LTGEEERVLAKFLRELAMQVNKESLNLPSIFVDFDRFNRGHIPEASMERALGGARLLPPAPVFQTLARKFRE-TALGGGAS-----EVNYRAFLGAVALAQDPLNTPRD-----VPNATKFR 2309
            RS   ++R ++Q V RDRIRL E +RDFD+L HG  T AQ A  +   G  LT  E+  +G  Y +L   D   S G  L+ +K FVEDV++VFTV GLE+ P              T+ + +G+   G +    LT  EE  + + +  +   ++++ L   + F DFDR  +G I     +R L   +LLP A   + +  KFRE T++G   +     +VNYRAFL A+ L    L    D     +P +  +R
Sbjct:  489 RSVPMLMRYIKQTVKRDRIRLEEYYRDFDKLRHGKITAAQFAAGLGAGGLLLTKEEVGLLGEDY-ALEDVD---SIGNHLVAWKKFVEDVESVFTVKGLERMPNHDL----------TDLQTKGEQFGGAKQDKDLTSMEEHKVTQAIVTMKKAIDRQRLEFKAAFEDFDRSKQGFISATKFDRVLSMFQLLPEAVTARLIVIKFREQTSMGNSMTLSSICDVNYRAFLNALDLVGKVLANGDDTTSLILPGSVAYR 731
[Close]
BLAST of mRNA_S-ischiensis_contig9.20783.1 vs. uniprot
Match: A0A485LN62_9STRA (Aste57867_23471 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LN62_9STRA)

HSP 1 Score: 115 bits (289), Expect = 8.350e-23
Identity = 91/280 (32.50%), Postives = 138/280 (49.29%), Query Frame = 3 
Query: 1515 ARPLQAASLSG--VRPQLLGLESD--RSCDQVVRELRQHVLRDRIRLSEPFRDFDRLGHGTCTQAQLARSMKTMGHPLTDGELAAVGRRYRSLHPSDVSASDGTPLLRYKAFVEDVDAVFTVHGLEKRP-----QTTEVRREVRAARDTEAELRGDLQAGVEPLTGEEERVLAKFLRELAMQVNKESLNLPSIFVDFDRFNRGHIPEASMERALGGARLLPP-APVFQTLARKFRE--TALGGGAS---EVNYRAFLGAVALAQDPLNTPRDVPNATKFR 2309
            A P  A   +G   + +++  ES+  R+   ++R L+    RDRIR+ E FRD DRL HG  T+AQ A  +   G  L+  ++  +   Y+     DV   +G P++ +    +DVDAVFT+ GLEK P     Q+ E   +  A  DT  + R             +E  +   LR++A ++  + L++   F DFD  N+G +  +  +R L    LLPP A   + +  KF E   A   G S   +VNYRAFL A+   +D   T  +VP A +FR
Sbjct:  477 ASPAGATPFAGHVAKTEVVVSESNAQRTFPMLLRYLKHKAKRDRIRMDEYFRDCDRLRHGKITRAQFAAGLNAAGFVLSALDIRLLADEYKYEQDKDV---EGKPMVAWPRLADDVDAVFTIKGLEKEPTRNIPQSIEANEQTTAVVDTTLDPR-------------DEATVVAVLRDMAEKIQHQRLDIKPPFEDFDLANQGFVSASKFDRVLSVFHLLPPDAATARLVVLKFSERGNAPHRGVSSTCDVNYRAFLSALDAIKD--ETANNVPGAREFR 738
[Close]
BLAST of mRNA_S-ischiensis_contig9.20783.1 vs. uniprot
Match: A0A5D6XFG6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFG6_9STRA)

HSP 1 Score: 116 bits (290), Expect = 8.650e-23
Identity = 95/289 (32.87%), Postives = 145/289 (50.17%), Query Frame = 3 
Query: 1485 RPQQRGVVGSARPLQAAS-LSGVRPQLLGLES----DRSCDQVVRELRQHVLRDRIRLSEPFRDFDRLGHGTCTQAQLARSMKTMGHPLTDGELAAVGRRYRSLHPSDVSASDGTPLLRYKAFVEDVDAVFTVHGLEKRPQTTEVRREVRAARDTEAELRGDLQAGVEPLTGEEERVLAKFLRELAMQVNKESLNLPSIFVDFDRFNRGHIPEASMERALGGARLLPP-APVFQTLARKFRETALG--------GGASEVNYRAFLGAVALAQDPLNTPRDVPNATKFR 2309
            RP  RG  GSA   +++S +  + P    L++     RS   ++R ++Q V RDR+RL E +RDFD+L HG  T AQ A  +   G  L   E+  +   Y S     V  S G  ++ +K FV+DV++VFTV GLE+ P        VRA     ++  G +Q   + L+ ++ER + + +R +   V+++ L++   F DFD   +G +  A  ER L    LLPP A   + L RKFRE +          G   +VNYRAFL A+ +          +P +  +R
Sbjct: 1059 RPLSRG--GSAVVAESSSTVVPIPPTPSALDAAPLPTRSVPMLLRYVKQVVKRDRVRLEEFYRDFDKLRHGCVTAAQFAAGLSATGLVLATDEVRLLADEYASR--GGVVDSAGQRVVAWKRFVDDVESVFTVKGLERAPYHN-----VRAL-GARSDQFGGVQLERDALSADDERAVTQTVRAMRRAVDRQRLSVKPAFEDFDCAKQGVVSAAKFERVLSTLGLLPPDAAHARLLLRKFREQSADDRAPSSTLGALGDVNYRAFLQALDIVGATDEPALVLPGSMAYR 1337
[Close]
BLAST of mRNA_S-ischiensis_contig9.20783.1 vs. uniprot
Match: A0A0N7L7W6_PLAHL (Ef hand family protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L7W6_PLAHL)

HSP 1 Score: 115 bits (288), Expect = 1.080e-22
Identity = 87/288 (30.21%), Postives = 138/288 (47.92%), Query Frame = 3 
Query: 1485 RPQQRGVVGSARPLQAASLSGVRPQLLGLESDRSCDQVVRELRQHVLRDRIRLSEPFRDFDRLGHGTCTQAQLARSMKTMGHPLTDGELAAVGRRYRSLHPSDVSASDGTPLLRYKAFVEDVDAVFTVHGLEKRPQTTEVRREVRAARDTEAELRGDLQAGVEPLTGEEERVLAKFLRELAMQVNKESLNLPSIFVDFDRFNRGHIPEASMERALGGARLLPP-APVFQTLARKFRETALGGGAS------EVNYRAFLGAVALAQDPLNTPRD------VPNATKFR 2309
            RP  RG + S     +   +       G+   RS   ++R ++Q V RDRIR+ E FRDFD+L HG  T AQ    + + G  L+  E+  +   Y +   +D +   G+  + ++ FV D+++VFTV+GLEK P       ++      E +L G     V  LT ++E  + + L  +   ++++ +++   F DFDR  +G I  A  ER L   +LLP  A   + L  KFRE    G  S      +VNYRAF  A+ +    +N   +      +P +  FR
Sbjct:  458 RPSSRGGIVSEIIAPSKLCTDTSADTTGITRVRSIAMLMRFIKQTVKRDRIRMDEFFRDFDKLRHGKITLAQFCAGLNSAGLHLSGEEMTMLSNEY-AWKEADRA---GSHWIAWRTFVNDIESVFTVNGLEKTPNY-----DLTTLESREGQLNG-----VVDLTVDDEEEVKRILMTMKRAIDRQRMDIKPTFEDFDRSKQGFISAAKFERVLSMLKLLPARASELRLLVVKFREQVPNGSTSMLSSICDVNYRAFFQALDIVGGSMNATSEAIRKVKLPGSVAFR 731
[Close]
BLAST of mRNA_S-ischiensis_contig9.20783.1 vs. uniprot
Match: A0A2D4C0R4_PYTIN (EF-hand domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0R4_PYTIN)

HSP 1 Score: 114 bits (286), Expect = 2.560e-22
Identity = 85/258 (32.95%), Postives = 132/258 (51.16%), Query Frame = 3 
Query: 1581 RSCDQVVRELRQHVLRDRIRLSEPFRDFDRLGHGTCTQAQLARSMKTMGHPLTDGELAAVGRRYRSLHPSDVSASDGTPLLRYKAFVEDVDAVFTVHGLEKRPQTTEVRREVRAARD-TEAELRGDLQAGVE---PLTGEEERVLAKFLRELAMQVNKESLNLPSIFVDFDRFNRGHIPEASMERALGGARLLPPAPVFQTLARKFRE-TALG-----GGASEVNYRAFLGAVALAQDPLNTPRD-----VPNATKFR 2309
            RS   ++R ++Q + RDRIRL E +RDFD+L HG  T  Q A  +   G  ++  E+  +   Y      DV +S G  L+ +K FV+DV++VFT  GLE+ P            RD ++ + RG+   G +    LT +EER + + + ++   ++++ L + + F DFDR   G I     +R L   +LLP A   + LA KFRE T++G         +VNYRAFL A+    + L    D     +P +  +R
Sbjct: 1036 RSVPMLMRYIKQMIKRDRIRLEEYYRDFDKLRHGKITNPQFAAGLNASGLVMSKDEMGLLADEYAL---PDVDSS-GKHLVAWKQFVDDVESVFTAKGLERVPN-----------RDLSDLQTRGEQFGGTKIEKDLTADEERRVTQAVVQIRKAMDRQRLEIKAAFEDFDRAKHGAISSTKFDRVLSMFQLLPEASTARLLAIKFREQTSVGTTLTLSSLCDVNYRAFLQALEYVGNVLAAGNDPTTLILPGSVSYR 1278
[Close]
BLAST of mRNA_S-ischiensis_contig9.20783.1 vs. uniprot
Match: A0A662YA76_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YA76_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.740e-21
Identity = 82/232 (35.34%), Postives = 117/232 (50.43%), Query Frame = 3 
Query: 1581 RSCDQVVRELRQHVLRDRIRLSEPFRDFDRLGHGTCTQAQLARSMKTMGHPLTDGELAAVGRRYRSLHPSDVSASDGTPLLRYKAFVEDVDAVFTVHGLEKRPQTTEVRREVRAARDTEAELRGDLQAGVEPLTGEEERVLAKFLRELAMQVNKESLNLPSIFVDFDRFNRGHIPEASMERALGGARLLPP-APVFQTLARKFRET-ALGGGAS-----EVNYRAFLGAVAL 2255
            RS   ++R ++Q V RDR+RL E +RDFD+L HG  T AQ    +   G  L+  E+A +G  YR      +    G   + +KAFV+DV++VFTV GLE+ P    V  + R  +     +  DL       T  EER +   +  +   ++++ + +   F DFDR  +G I     ER L    LLP  A   + L  KFRE  ALG   +     +VNYRAFL A+ L
Sbjct:  495 RSAPMLIRYIKQTVKRDRVRLEEYYRDFDKLRHGKITAAQFCAGLDAAGLLLSREEMALLGDEYRCQEVDSM----GHNWIAWKAFVDDVESVFTVKGLERTPHHDLVELQTRKGQFGGVVIDKDL-------TSPEERQVTAIMITMKRAIDRQRMEIKPAFEDFDRSKQGFISATKFERVLSMFSLLPAQASEARLLVIKFREQGALGTNTTLSSICDVNYRAFLEALLL 715
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS98_ECTSI7.490e-8643.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVF2_9PHAE2.520e-7851.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V9Z1F7_9STRA3.820e-2433.86Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0W6E8_9STRA3.570e-2333.60Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8K1CS62_PYTOL8.190e-2334.24Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485LN62_9STRA8.350e-2332.50Aste57867_23471 protein n=1 Tax=Aphanomyces stella... [more]
A0A5D6XFG6_9STRA8.650e-2332.87Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A0N7L7W6_PLAHL1.080e-2230.21Ef hand family protein n=1 Tax=Plasmopara halstedi... [more]
A0A2D4C0R4_PYTIN2.560e-2232.95EF-hand domain-containing protein n=2 Tax=Pythium ... [more]
A0A662YA76_9STRA1.740e-2135.34Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3177722..3187819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score295.4
Seed ortholog evalue4.6e-77
Seed eggNOG ortholog2880.D7FS98
EggNOG OGs28JGH@1,2QRVM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-05_004820.1
Exons14
Model size2327
Cds size1410
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20783.1prot_S-ischiensis_contig9.20783.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3178028..3183981 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817401.6579676-UTR-S-ischiensis_contig9:3177721..31778751622817401.6579676-UTR-S-ischiensis_contig9:3177721..3177875Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3177722..3177875 +
1695741087.066553-UTR-S-ischiensis_contig9:3177721..31778751695741087.066553-UTR-S-ischiensis_contig9:3177721..3177875Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3177722..3177875 +
1622817401.6709669-UTR-S-ischiensis_contig9:3178009..31780271622817401.6709669-UTR-S-ischiensis_contig9:3178009..3178027Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3178010..3178027 +
1695741087.0785022-UTR-S-ischiensis_contig9:3178009..31780271695741087.0785022-UTR-S-ischiensis_contig9:3178009..3178027Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3178010..3178027 +
1622817401.793156-UTR-S-ischiensis_contig9:3183981..31841671622817401.793156-UTR-S-ischiensis_contig9:3183981..3184167Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3183982..3184167 +
1695741087.2403326-UTR-S-ischiensis_contig9:3183981..31841671695741087.2403326-UTR-S-ischiensis_contig9:3183981..3184167Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3183982..3184167 +
1622817401.8052332-UTR-S-ischiensis_contig9:3185257..31853211622817401.8052332-UTR-S-ischiensis_contig9:3185257..3185321Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3185258..3185321 +
1695741087.2520323-UTR-S-ischiensis_contig9:3185257..31853211695741087.2520323-UTR-S-ischiensis_contig9:3185257..3185321Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3185258..3185321 +
1622817401.8163433-UTR-S-ischiensis_contig9:3185587..31857881622817401.8163433-UTR-S-ischiensis_contig9:3185587..3185788Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3185588..3185788 +
1695741087.2663217-UTR-S-ischiensis_contig9:3185587..31857881695741087.2663217-UTR-S-ischiensis_contig9:3185587..3185788Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3185588..3185788 +
1622817401.8286946-UTR-S-ischiensis_contig9:3187001..31872141622817401.8286946-UTR-S-ischiensis_contig9:3187001..3187214Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3187002..3187214 +
1695741087.279626-UTR-S-ischiensis_contig9:3187001..31872141695741087.279626-UTR-S-ischiensis_contig9:3187001..3187214Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3187002..3187214 +
1622817401.8406203-UTR-S-ischiensis_contig9:3187738..31878191622817401.8406203-UTR-S-ischiensis_contig9:3187738..3187819Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3187739..3187819 +
1695741087.291671-UTR-S-ischiensis_contig9:3187738..31878191695741087.291671-UTR-S-ischiensis_contig9:3187738..3187819Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3187739..3187819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817401.6813626-CDS-S-ischiensis_contig9:3178027..31781501622817401.6813626-CDS-S-ischiensis_contig9:3178027..3178150Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3178028..3178150 +
1695741087.0922916-CDS-S-ischiensis_contig9:3178027..31781501695741087.0922916-CDS-S-ischiensis_contig9:3178027..3178150Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3178028..3178150 +
1622817401.6918743-CDS-S-ischiensis_contig9:3178829..31789551622817401.6918743-CDS-S-ischiensis_contig9:3178829..3178955Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3178830..3178955 +
1695741087.1052017-CDS-S-ischiensis_contig9:3178829..31789551695741087.1052017-CDS-S-ischiensis_contig9:3178829..3178955Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3178830..3178955 +
1622817401.702618-CDS-S-ischiensis_contig9:3179404..31795931622817401.702618-CDS-S-ischiensis_contig9:3179404..3179593Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3179405..3179593 +
1695741087.1218874-CDS-S-ischiensis_contig9:3179404..31795931695741087.1218874-CDS-S-ischiensis_contig9:3179404..3179593Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3179405..3179593 +
1622817401.7154484-CDS-S-ischiensis_contig9:3180742..31808411622817401.7154484-CDS-S-ischiensis_contig9:3180742..3180841Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3180743..3180841 +
1695741087.137316-CDS-S-ischiensis_contig9:3180742..31808411695741087.137316-CDS-S-ischiensis_contig9:3180742..3180841Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3180743..3180841 +
1622817401.7306619-CDS-S-ischiensis_contig9:3181464..31816321622817401.7306619-CDS-S-ischiensis_contig9:3181464..3181632Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3181465..3181632 +
1695741087.1729271-CDS-S-ischiensis_contig9:3181464..31816321695741087.1729271-CDS-S-ischiensis_contig9:3181464..3181632Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3181465..3181632 +
1622817401.7453673-CDS-S-ischiensis_contig9:3182136..31823041622817401.7453673-CDS-S-ischiensis_contig9:3182136..3182304Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3182137..3182304 +
1695741087.1852143-CDS-S-ischiensis_contig9:3182136..31823041695741087.1852143-CDS-S-ischiensis_contig9:3182136..3182304Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3182137..3182304 +
1622817401.7571883-CDS-S-ischiensis_contig9:3183253..31834211622817401.7571883-CDS-S-ischiensis_contig9:3183253..3183421Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3183254..3183421 +
1695741087.1980066-CDS-S-ischiensis_contig9:3183253..31834211695741087.1980066-CDS-S-ischiensis_contig9:3183253..3183421Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3183254..3183421 +
1622817401.768324-CDS-S-ischiensis_contig9:3183480..31836211622817401.768324-CDS-S-ischiensis_contig9:3183480..3183621Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3183481..3183621 +
1695741087.2114425-CDS-S-ischiensis_contig9:3183480..31836211695741087.2114425-CDS-S-ischiensis_contig9:3183480..3183621Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3183481..3183621 +
1622817401.7806954-CDS-S-ischiensis_contig9:3183753..31839811622817401.7806954-CDS-S-ischiensis_contig9:3183753..3183981Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3183754..3183981 +
1695741087.227066-CDS-S-ischiensis_contig9:3183753..31839811695741087.227066-CDS-S-ischiensis_contig9:3183753..3183981Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3183754..3183981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20783.1

>prot_S-ischiensis_contig9.20783.1 ID=prot_S-ischiensis_contig9.20783.1|Name=mRNA_S-ischiensis_contig9.20783.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=470bp
MDAGGIMLSPQELRLVCDRYRVPGPKSELVDYQKFCDQVNKVFTIKGLER
VPSKTVRRSLQDMAPLRLGLDNPTLTPEERACMADMLDEMRRNVRDKALV
VKMLFKGFDHDMDGCVSGEQLLRVVSCHGLLGPDKASDFSIYRRGGEKYG
HVLVKAYAARVHGPGLEAMGCSYQALHQQISEPGPLGLPVKEARPAFMTD
SLTEAERVAGGGANPDPGKRLEDLLVQEAVACRIEVQEYLVAQAGAAATR
SQPGGGGRRSLVSREDFQRALRGLWSTHFTEAQANALAARRALVLPPGEV
AAAAEDTSPGGGEAAAAAAAAAATAAAAAATAAAAAGRGGGGRGGGSGGA
AAARLTAEEEAEVERFVSSVRSRVKRERALLQPSFTEFDRRNEEAFVNYR
EFLRHADVSARTGTKAFIDDFVMGRTHGTPPAGGGGGEAATAGGGGFGEA
AAGGVSVGGSPAAVGAGVG*
back to top

mRNA from alignment at S-ischiensis_contig9:3177722..3187819+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20783.1 ID=mRNA_S-ischiensis_contig9.20783.1|Name=mRNA_S-ischiensis_contig9.20783.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=10098bp|location=Sequence derived from alignment at S-ischiensis_contig9:3177722..3187819+ (Schizocladia ischiensis KU_0333)
CGGCCTCTGTACAGGATCAAGGGTGACGACAGCCTTCTTCGCCCCATCAA
GGACCGAGTGAGGCTGGCCGTGAAGCAGCGCAGGCTCAGACTCGAGAACT
TCTTCCAACCCTTTGACAGCCGGAAGACGAAAAAGGCGAGAGACTTGCCC
CCCAGTCGTGGCTGCCTCGAGCACGACATAAGGCACTGAATGTACACGTG
GGCGAACCGGGCGTGGCCCAGGCGGCGCTTTTCGGATTGCGCAATGCGCC
AACTCCTAACGGGCTCCCCTCCTCTTCAGGTCACGGAGACCTGCTTTGCG
AGGGCAATGGACGCCGGCGGCATCATGCTCAGCCCACAGGAGCTGCGGCT
CGTGTGCGACCGGTACCGCGTGCCTGGGCCGAAGAGCGAGCTCGTCGACT
ACCAGAAGTTCTGTGACCAGGTCAATAAGGTGCGGGGGAGGCGTTTAGCG
AGACGGTTGATTCCGCGTGACTTGGGGACCCAGCCTCCCGCGAGGTTGAA
CAGCACAACTCCCCCAATTCGCTCGAAGCAATAGCTGAAAAGTCTCGGCA
TCCTGGCTTGGCTGCTCCCCCCGGCCGATGGGAAGATATTCCAGTTGCCG
TTCGCTGCACCTCAAAGTGCACAAAAGCACTAGATTACTACGTAGTAGCA
CGGCGGTGTGTCGTAGTTTCAGATCTTGGGCACTGCAACCGGTCTCCCGC
CTCTAAGTACAGGCATTGTTATTGTGAGGGCACGGCGGAGGAAGAAGTTG
CACTACTACTCGTATACTACTACATATATATATATGTGCTCACATTTTGC
TTGCCGTAGTCCCGAGACCATTGACTACTACATACCTATACTTCATACTT
CTATTATACTACTCGTAGTACTGTGCCAGTTTAGGCCATTGGTGAGGAAC
GTCTGCGCCGTCGTCCTCTATGGGTTAGGAAATCATTCTCCTACAGTAAT
ACTCGTACGTCCTACGGTGCCTCGGGAGCAATACGTACATGCTTTGAAGC
GCCTGGCTACTTAGTATTCAAAAGGGACGTTTCACAAACCTGGTGAGCGT
TGAAGCGCCTGGCTACTCAGCAGCAAACGCCCGCTTTCGCAAAACCTGGC
GCCTGCAGGTGTTCACCATCAAGGGCCTGGAGAGGGTGCCCAGCAAGACG
GTCCGGCGTAGCCTGCAAGACATGGCCCCCCTGCGGCTCGGGCTGGACAA
CCCCACGCTCACACCCGAGGAAAGGGCCTGCATGGTGCGTGGTGATTCAT
ATAAATTGTAACGAGGTACAATCGCATGTGTGTGCGATTGACTGTTCTCG
TATTAGTAGTTGCATGGTGCATGCTCGCCTTGTGTGTGTGTGTCGTGTGC
GTCCATGTGAAGTATGTCTATGCGTCTGTGGGTGTGTGTGTGTGTGGGTG
GGTGTGCGTGTGTGTGTGTGGGTGGGTGTGCATGTACATGTCTTTGTGTG
TGTGTGTCGTGTGCGTCCATGTGAAATGTGTCTATGCATCTCTGGGTGTG
GGTGTACGTGTGTGTATGTGTGTGTGTGCACGCACATGTCTTTGTGTGTG
CGTGTGTGTTTCTGTGTGTGTTGGTGCGTGTGTGTGTTTCTGTGTGTGTT
GGTGTGTGTGTGTCGTCGCCGTTGGGTTGCTGCTGTTGCCATTGCCGACG
AAAAATGAAACGTGCGCCCGCCCCGCCACGCAGGCCGACATGCTGGACGA
GATGCGGAGGAACGTCCGGGACAAGGCCCTGGTGGTGAAGATGCTCTTTA
AGGGCTTCGACCACGACATGGATGGATGCGTGTCCGGGGAGCAGCTGCTG
CGCGTGGTCAGCTGCCACGGGCTCCTCGGCCCGGACAAGGCGAGCGACTT
TTCTATTTATCGCCGAGGAGGCGTTTTTGGTGTTGATTTTTGTGTGGAAA
GAAAAGAAGCGAGTGGAAAACAGAGGTGATCCTACTTTTGCGAGTGCCAG
GCCCCGACACGGAAGCTCGTCATTTATTTTTCCGACGACCGCCCAACTGC
ACGCGGGTCGATTTTTTTTATGAAGCACGTTCGAGTACAAGCAAGCAAGT
GTGTACTATGTACATTTTTGTGTGGAAAGAAAAGAAGCGAGTGGAAAATG
GAGGTGACTCCATTTTTGCCGGTTCCGGGCCTCAATGCACATGCTTGAGG
AGTATATATATATGTACTCATTGGTTTGTCTTGCGACATAACCGTGCGTG
CAATTCCGACAGCCCTAAGTCGAAACTTTGGGTTTGCCCCCCGACAGGAG
TAGCTATTAAGCCATGGACTCTCGCATCCCAACTAGGCCTACATACGAAA
ACTGTTGCTAGGCTGCTGGACCGTCATCCCACGACGTTTTTTTTTTTCAC
CCAGCCCCACCCTCACAGGACGGACCTCTGCTAGCCGTGGTGCGCGTACT
GTGCTGTAGAGGGGTTTGGTGACACGGTGGTGTGCCATTGTCCTCCCAAG
GGGGCACTCACGAGTTGCCTGCCACAGTGATGGAATATCGATCAGTAGTT
AGCTATTGGGCTCGACTGATTTTGTGGGTGGCGTTACTAACTACTGGGAT
GTAGTGTGGGTAAAACTATCGAATATTGACTATCGATAGATGTACACAAC
AGTACTGTCAATTAATAGGTCCGTTTGCTTAGATATTCCATCACTGGCCT
GCCGTTGCCGTATGGCCAAGGGGTTTGGTGAGGCGCTAGAGGGGCGAGTA
GAGGACACCGCCGGCAATACTCTGCTCCGAGGGGTGGACCCCGCCGCCTT
AACCCTTTTACCCCTAGTAAATTGGACGTACACACTAGACCCCTATGATT
GTAAGGACCCCAGGGGTAAAGGGTTAGCCCTACTAGAATGACAAACCCTT
TTGCCCCTGGTAAATTGGGCTTACACACCAGACCCCCACGAATATGATTC
TACGGACCCCAGGGGGTAAAAGGGTTAACCCTACTACTACGTAGTATAAC
AAAGGAACACCTCCTCTTTCCCACTCGCTTTGTTATCTTCTTGCAAAAAC
ACCGAGCAGGTGCTCCACGAGGAGAAATACGGGCACGTCCTTGTGAAGGC
GTATGCGGCGCGCGTGCACGGACCGGGGCTGGAGGCGATGGGGTGCAGCT
ACCAGGCCTTGCACCAACAGGTACTTCGAAGTACTTAACCCTGGCACCCC
TAGTAAATTGGACTTACACACTACCAGTGGGGTGCAGCTACCAGGCCTTG
CACCAACAGGTACTTCCTTTAGACCGTGCAGCGTCGGGATAGGGGAACTT
TGTGTGAAAACAGTAGTACTTGCTACCCTGGCGAGCTATAAGGAAAGGCC
ACCGCTGAGGTCCTTAGCGACGTGGCCTGCACCTCGTCCTGTGTTGTTCC
TGATAGTACTTAATTCTGTTTGGCCGACACTTACTAGTAGCTCATTTCTC
TCTCTCCCATCTACCATCTTTTTCCTCCTCCCCCCACAGATCAGCGAGCC
CGGGCCCCTGGGCCTGCCGGTGAAGGAGGTGTACTCAGTTCTTTAGGCTG
ACACTTACTACTGCTGGAACTCATTTCTTCCGTCCATCCATCATCTTTCC
TCCCTCTGCAGATCAGCGAGCCCGGGCCCCTGGGCCTGCTGGTGAAGGAG
GTGTACCTAGTGCTTTTGGCTGACACTACTACAGTAGCACTGTACCTCAT
TTCCTTTTGGCGGACACTCACTGCAGCAGTACTGTACCTAATTTCTTCCG
TCCATCCACCATCTTCCTGCTCATCTTCCTCCTCCCTCAACAGATCAGTG
AGCCCGGGCCCCTGGGCCTCCCGGTGAAGGAGGCCCGCCCCGCCTTTATG
ACCGACTCCCTCACGGAGGCCGAGCGGGTGGCCGGGGGGGGCGCCAACCC
GGACCCGGGCAAGCGCCTGGAGGACCTGCTGGTGCAGGAGGCGGTGGCTT
GCCGCATCGAGGTAAAAAATCATTAACACTTTTACCCCTGCTTGACCGGA
CTTACACCTAAAACCCTACTCGAGTATATTTATACGGACTTCAGGGGTAA
AGGGTGAAGTACTGCAGCTGTTGCTTGGCGTGGAGGACCTGCTGGTGCAG
GAGGCGGCGGCTTGCCGCATCGAGGTGAAAGTTCATTATTACTTGAAATT
AGCTCTTGCTTCGACGTAGGAGGGCGACGGGGGACGCTCGGCCCCTCGCC
AAATGCTGCACTTGTACTTCCAAGTACTTTGAAGTACTTTGTACTTGTCT
CGTTGGAGGACCTGCTGGTGCAGGAGATGGTAGCTTGCCGCATCGAGGTG
AAAAATCATTATTTGTAAGCTCTTGCCTCGACGCAAAGCTCCCATCCCTG
CGCGCGTACATCCGGGCCCAGCAAAAGGGGCCACGGACATCGAACACAAT
GTGCGCGCACCCCCCCAACCCCATACCTACTCGTGCATGCAAATATAAAC
ATTCATGTTTGGCAGGTCCAAGAGTACCTGGTGGCTCAGGCGGGGGCGGC
CGCCACGCGGTCGCAGCCCGGGGGGGGGGGGCGTCGCTCCCTGGTGTCGC
GCGAGGACTTCCAGCGGGCGTTGAGGGGGCTGTGGTCCACGCACTTTACG
GAGGCGCAGGCCAATGCCCTCGCGGCCAGGCGAGTGGACGGGGCTTGAGC
AGTGAATACTTCGAAGTGCTTACAGTAGGAGGGTTGATGAGAGATGGTGG
TGGTTCAAATAAATTGTACTTCCGAAGTAACGAGGCACTAGTGTAGTATA
TTGTACTCCCGTCTGTGTGAAATCGAGGGTTCTCGCAGAGATTTATGTGA
TGTGGTGTGATGCGATGTGATGTCGAACAACAGCGCATTAGAGTGAACAT
CACATCACATCACAGATTGTGGTGAGGTCCAATCTCGCCTGCGTGTGTTC
TCGTAGAGATTGAGTGGATAAAACAGTACATCGAAGGACAATATCTGCCA
CGCCTCGGACTTGGCACCACTTGGCAATCAAGCCATCATCAAGCCAAGCC
AGACCCCAGATCAACATAAGACGCCGTACTCAATCCTTGCAATCTCATCC
CCTCATCCTCCAACCCCCCCCACCCACAAAAACAACAACTTAGCATAAGC
TACTGTACCTTGCCATCTGCTCCCCTCATCCTCCCCCCCGTCCCCTGCCC
CCACCAAAACAAAAACCACCACAAGCGCGCCGCCCAGGACAACCCCCGAC
TGGTGGACCTCTCGACATAAGGCGCTGTACATTGCCCATCTCATCCCCTC
GTCCCCCCCTCCCCCAACAAAAACAAAAAACACCACAAGCGCGCCGCCCA
GGACAACCCCCGACTGGTGGACCTCTCGACATAAGGCGCTGTACGGTGCC
ATCTCATCCCCTCATCCTACACACACACCCACCCCCCACACAAGAACAAC
AACTTGAACATACGGCGCTGTACCTTGCCATCTCATCCCCTCAACCCCCC
CACAACAACCACAACCACAGGCATGCCGCCCAGGACAACCCCCGACTCGT
AGACCTCTCCCTCTTCGCCCGCAAGCTCAGCCAGCGCGTCCGCGCCGCCA
AGGCCGCTGCCATCGCCACCGCCGCCGCCCAGGCCCTAGTCCTGCCCCCC
GGCGAGGTGGCGGCGGCCGCGGAGGACACCTCCCCCGGGGGGGGCGAGGC
CGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGCGGCGGCGGCGGCGGCGA
CGGCGGCGGCAGCGGCGGGGAGGGGGGGAGGAGGGCGTGGGGGCGGCTCC
GTGGCGGCGGCGGCGGGGGGGGGGGGGAGGGGCGGGGGGGAGGGGGAGGC
GGACCTGAGGGCGGGGCGGCGGCCGCCCGCCTGACGGCGGAGGAGGAGGC
GGAGGTGGAGCGGTTTGTGAGCAGCGTGCGGAGCCGTGTGAAGCGGGAGC
GGGCGCTGCTGCAGCCCTCCTTCACGGAGTTTGACCGGCGGAACGAGGAG
GTGATCGCCAACGACCAGTTCCTGCGGGTGCTCTCCAGCCTGGGTTTCTT
GCCCCCCGACCCCCGCCTTCAGGCCCTCATCCTGCGCCGCTACGGCGTCG
CTGACTACCGCCGCCAGCCCACCGTCCACCAGGCGTTTGTGAACTACCGC
GAGTTCCTCCGGCACGCCGACGTCTCCGCCCGCACCGGCACCAAGGCCTT
CATCGACGATTTCGTCATGGGACGCACGCACGGCACCCCCCCCGCCGGCG
GCGGCGGCGGCGAGGCCGCAACAGCGGGGGGTGGTGGGTTCGGCGAGGCC
GCTGCAGGCGGCGTCTCTGTCGGGGGTTCGCCCGCAGCTGTTGGGGCTGG
AGTCGGATAGGTCGTGCGACCAGGTGGTTCGGGAGCTGCGGCAGCACGTG
CTAAGGGACCGCATCCGCCTGTCAGAGCCCTTCCGGGACTTTGACCGCCT
GGGGCACGGCACCTGCACGCAGGCGCAGCTGGCAAGGTCCATGAAGACCA
TGGGGCACCCGCTCACCGACGGGGAGCTGGCGGCAGTCGGAAGGAGGTGG
GTGGGGGGGAGAGGGGGGAGAGGGGGAGAGGGAGGGGGGGGGGGAGGGGG
GGAGGGAGGGAGGGAGGGAGGGGGAGGGGAGGGAGGGAGGGGGGGAGGGA
GGGGGGGGGGGAGGGAGGGGGGGAGGGAGGGGGGGGGGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGGGGGAGGGAGGGA
GGGAGGGAGGGAGCGGGAGAGAGAGGGGGAAAGGGAGAGGGAGACTGAGG
GGGGGGGGGAAGGAGGGACGGAGGCAGGGAGACGGGGAGAGAGGGAGAGA
GAGAGAGAGAAGGAGGGAGGGAGGCAGAGAGAGGGACAGAGAGAGAGAGG
TGGGGAGGGACAGAGGGAAACTCTAGGCGTGTTTCGGTAGGTAGAGTGGA
GCAGCAAGTCCTCTGGTTTCTCTCTCTCCTTTGCACTGATTGTATCCTAG
GGCGGTTGCTTTTGGAAGTGCTTGGATGTATGGCAAGAAGGAGAAGAGAC
GTGAACCAGCCACGATATTTTACTGTCTTCCGTCCTCCACGGCCTATTGC
GGGTACAGAAACGGCGCTGTGCACGCTGTGCACGCGGAAACTGGAGCGGG
AAAGAGTTTTTTTTTAGGCTACTTGGTCAGCAACGCGGTGGCCTATGCCG
TGGGCTTTATTTAGGGTTAGGGATAGGGTTAGGTTTAGGGTTTAGGGTTA
GGGTAGGTCCGTCCGTCCCATAGGGTCACCCGTGTGGGACGCCGGGGTGG
TCAACGGCCATGTTGGCTGCGGCAGGCAACTCATGAGTACGCCCCACCCC
CCCAACCCCCCCCGGCGCCGGCGCGCAGGAGATGGGCTACCGCAGCCTAA
GAAGCAGTCAAAGTGTTTCATCTTGGCTTTCGAGCCAGGCAGCCTGCCCA
CCCGCCCTTTTCCCTTCCTCCCTTGTGCCCAGGGTTGGCACTTGGCAGCT
ACTTGGGGCCTAAACAGCCTCCATTTTAGGTCGAATTGCCCCTAACTACC
TCTAATACCGGGCCTAAAAGGGCATCACTTAGTAGGGGTGAAGCGCCAAC
CCTGCTCGCTTGTTGCCCCCCGCGGGCGGGAGACAGGTACCGCAGCCTCC
ACCCCTCGGATGTGAGCGCCTCGGACGGCACGCCCCTGCTGCGCTACAAG
GTATGCATGGTACTACAAAAGAGCGATTTTTTTGCCCAAATATTGTTTTT
TGCGATATATATCGAGCATTTTCGCCCAAATTGCGATTTTTTAAATTGCC
GTCGCAATTGCCGTCGCGCTTTCGCACCGTGGTTACCTTCCAAGGCGTTT
GTGGAGGACGTGGATGCCGTCTTTTTGCCCGAATAGTTTGTTGCGTTGTC
GAAAAATTTCACCCAAATGCGATCTTTTTGACATCGCACTTTTGTATATA
CCATGGTTACCACAAGGCGTTTGTGGAGGATGTGGACGCCGTCTTCACCG
TGCACGGCCTGGAGAAGCGCCCACAGACAACAGAGGTGCGGAGGGAGGTG
AGGGCAGCGCGGGACACCGAGGCGGAGTTGCGGGGGGACCTGCAGGCCGG
GGTGGAGCCGCTTACCGGGGAGGAGGAGCGGGTGCTGGCTAAGTTCCTGC
GGGAGCTTGCCATGCAGGTGTGATGGGGTGGGGGGTGGGGTGGGATGGGG
TGGGATGTGACGTGCTGTGATGTGATGTGATGTGATGCAATGTCATGCGA
TGTGATGTACATACCCATACGCTGACGGGGGAGGAGGAGAGGGTGCTGGC
CAAGTTCCTGCGGGAGCTGGCCATGCAGGTGATGGGATGTGATGTGATGT
GATGTGGTGTGATGTGATGTGATGTGATGTGATGTGATGTGATGTCTGAC
GGGGGAGGAGGAGCGGGTGCTGGCTAAGTGCCTGCGAGAGCTGGCCATGC
AGGTGATGGGATGGGATGGGGTGGGATGGGGTGGGATGGGATGTGATGGG
TTGGGATGGGATGTGGTGTGGTGTCATGTGATGTGATGTGATGTCTGACA
GGGGAGGAGGAGCGGGTGCTGGCTAAGTGTCTGAGGGAGCTGGCCATGCA
GGTGATGTGATGTGATGTGATGTGATATGGTGTGATGTGACGCGATGTGA
TGTGATGTGATGTGATGTGATGCGATGTGATGTGGTGTGGTGTGATGTGG
TGTGATGTCTGACCGCGGAGGAGGAGCGGCTGCTGGCTAAGTTCCTGCAA
GAGCTGGCCATGCAGGTGGCGGGGTGATTCATATATATTGTAGCGAGGCA
CAATCACACGTGTGTGAGATTTGAGTGTTCTTGTATTAGTGGTTATCCCA
TTTAATGATCGAGTATTTGTATACTTCGAAGTATTAGTGATTGTCACGTC
AAAGAATTTAAAGCAAAGAAGAGAAAATGAGAAGGAGCGGGTGCTGGCCA
GGTTCCTGCGGGAGCTGGCCATGCAGGTGATGGGATGGGATGGGACGGGA
TGGGATGGGGTGGGATGGGATGTGATGTGATAGGGTGTAGAGTAATGTGA
TGTACTTCGAACTACTTCCGGAAGCAATAAAGTAGAGACACCCAGGGGTT
CTTTCCCACTCGCTTCTTTGTCTTCTTGCAAAAAAATGCACTCTGCCGTG
TTGTGTATTGCCGGCACGTGACCCGCCGTGGCCAGTGGCGGAATATCTAA
GCGAAAAATCAACCTATTTGTCGACAGTACTGAGCTATGCATCTATTGAT
AGCCGATATTTGATAACTCTCCCGACACTAAATCCAAGTACTCTGTAGTT
TGTAGCGCCTCCCACACAATCAGTCGAGCCTGATAACTACCTACTGATCA
TCGATATCCCATCACTGCCCGCTTCTGCAGGTCAACAAGGAGAGCCTCAA
CCTGCCCAGCATCTTTGTCGACTTCGACCGCTTTAACCGGGGGCACATCC
CCGAGGCCAGCATGGAGCGTGCCCTGGGTGGCGCACGCCTCCTGCCGCCG
GCCCCAGTGTTCCAGACCCTGGCGCGCAAGTTCCGCGAGACCGCCCTGGG
CGGGGGGGCGTCCGAGGTCAACTACCGGGCATTCCTCGGCGCGGTGGGTG
GGGTGTTGGTTGATGTGATGTGATGTGGTGTGGTGTAGTGTGGTGTGGTG
TGATGTGATGTAGTGTGATGTGACGTGATGTGATGTGATGTGAGGCTTCC
GAGGTCAACTACCGGGCGTTCCTGGGCTGGGTGGGTGTGATGTGATGTGA
TGTGATGTGGTGTGGTGTGATGTGGTGTGGTGTGGTGCGGTGTGATGTGG
TGTGGTGTGGAGTGGTGTGGCGCGGTGTGATGTGGTGTAATGTGGTGTGG
TGTGGTGTGATGTGATGTGATGTGACGAGAAAAATCAGTCGACCCCAATA
GCTATCTACTGATCGATATTCCATCACTGCCCCGGGGGGCTGCACGCGAG
TGGCCCTCGCCCAGGACCCCCTCAACACCCCCCAGGACGTCCCCAACGCC
ACAAAATTCGGTGCCTTAGGTCTAATTACCCCTAATTACCTCTAATTAAG
GGCCCAAAAGGGCACCACTTAGGGGCTAAGTGCCAACCCTGCTGCCCCCC
CGCCCGACTGCACGCAGGTTGCCCTCGCGCAGGACCCCCTCAACACCCCC
CGGGACGTCCCCAACGCCACCAAGTTCCGCGCCATCCGCCGCGAGGGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:3177722..3187819+

>mRNA_S-ischiensis_contig9.20783.1 ID=mRNA_S-ischiensis_contig9.20783.1|Name=mRNA_S-ischiensis_contig9.20783.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2820bp|location=Sequence derived from alignment at S-ischiensis_contig9:3177722..3187819+ (Schizocladia ischiensis KU_0333)
ATGGACGCCGGCGGCATCATGCTCAGCCCACAGGAGCTGCGGCTCGTGTG
CGACCGGTACCGCGTGCCTGGGCCGAAGAGCGAGCTCGTCGACTACCAGA
AGTTCTGTGACCAGGTCAATAAGATGGACGCCGGCGGCATCATGCTCAGC
CCACAGGAGCTGCGGCTCGTGTGCGACCGGTACCGCGTGCCTGGGCCGAA
GAGCGAGCTCGTCGACTACCAGAAGTTCTGTGACCAGGTCAATAAGGTGT
TCACCATCAAGGGCCTGGAGAGGGTGCCCAGCAAGACGGTCCGGCGTAGC
CTGCAAGACATGGCCCCCCTGCGGCTCGGGCTGGACAACCCCACGCTCAC
ACCCGAGGAAAGGGCCTGCATGGTGTTCACCATCAAGGGCCTGGAGAGGG
TGCCCAGCAAGACGGTCCGGCGTAGCCTGCAAGACATGGCCCCCCTGCGG
CTCGGGCTGGACAACCCCACGCTCACACCCGAGGAAAGGGCCTGCATGGC
CGACATGCTGGACGAGATGCGGAGGAACGTCCGGGACAAGGCCCTGGTGG
TGAAGATGCTCTTTAAGGGCTTCGACCACGACATGGATGGATGCGTGTCC
GGGGAGCAGCTGCTGCGCGTGGTCAGCTGCCACGGGCTCCTCGGCCCGGA
CAAGGCGAGCGACTTTTCTATTTATCGCCGAGGAGGCGCCGACATGCTGG
ACGAGATGCGGAGGAACGTCCGGGACAAGGCCCTGGTGGTGAAGATGCTC
TTTAAGGGCTTCGACCACGACATGGATGGATGCGTGTCCGGGGAGCAGCT
GCTGCGCGTGGTCAGCTGCCACGGGCTCCTCGGCCCGGACAAGGCGAGCG
ACTTTTCTATTTATCGCCGAGGAGGCGAGAAATACGGGCACGTCCTTGTG
AAGGCGTATGCGGCGCGCGTGCACGGACCGGGGCTGGAGGCGATGGGGTG
CAGCTACCAGGCCTTGCACCAACAGGAGAAATACGGGCACGTCCTTGTGA
AGGCGTATGCGGCGCGCGTGCACGGACCGGGGCTGGAGGCGATGGGGTGC
AGCTACCAGGCCTTGCACCAACAGATCAGTGAGCCCGGGCCCCTGGGCCT
CCCGGTGAAGGAGGCCCGCCCCGCCTTTATGACCGACTCCCTCACGGAGG
CCGAGCGGGTGGCCGGGGGGGGCGCCAACCCGGACCCGGGCAAGCGCCTG
GAGGACCTGCTGGTGCAGGAGGCGGTGGCTTGCCGCATCGAGATCAGTGA
GCCCGGGCCCCTGGGCCTCCCGGTGAAGGAGGCCCGCCCCGCCTTTATGA
CCGACTCCCTCACGGAGGCCGAGCGGGTGGCCGGGGGGGGCGCCAACCCG
GACCCGGGCAAGCGCCTGGAGGACCTGCTGGTGCAGGAGGCGGTGGCTTG
CCGCATCGAGGTCCAAGAGTACCTGGTGGCTCAGGCGGGGGCGGCCGCCA
CGCGGTCGCAGCCCGGGGGGGGGGGGCGTCGCTCCCTGGTGTCGCGCGAG
GACTTCCAGCGGGCGTTGAGGGGGCTGTGGTCCACGCACTTTACGGAGGC
GCAGGCCAATGCCCTCGCGGCCAGGCGAGTCCAAGAGTACCTGGTGGCTC
AGGCGGGGGCGGCCGCCACGCGGTCGCAGCCCGGGGGGGGGGGGCGTCGC
TCCCTGGTGTCGCGCGAGGACTTCCAGCGGGCGTTGAGGGGGCTGTGGTC
CACGCACTTTACGGAGGCGCAGGCCAATGCCCTCGCGGCCAGGCGAGCCC
TAGTCCTGCCCCCCGGCGAGGTGGCGGCGGCCGCGGAGGACACCTCCCCC
GGGGGGGGCGAGGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGCGGC
GGCGGCGGCGGCGACGGCGGCGGCAGCGGCGGGGAGGGGGGGAGGAGGGC
GTGGGGGCGGCTCCGCCCTAGTCCTGCCCCCCGGCGAGGTGGCGGCGGCC
GCGGAGGACACCTCCCCCGGGGGGGGCGAGGCCGCGGCGGCGGCGGCGGC
GGCGGCGGCGACGGCGGCGGCGGCGGCGGCGACGGCGGCGGCAGCGGCGG
GGAGGGGGGGAGGAGGGCGTGGGGGCGGCTCCGGCGGGGCGGCGGCCGCC
CGCCTGACGGCGGAGGAGGAGGCGGAGGTGGAGCGGTTTGTGAGCAGCGT
GCGGAGCCGTGTGAAGCGGGAGCGGGCGCTGCTGCAGCCCTCCTTCACGG
AGTTTGACCGGCGGAACGAGGAGGGCGGGGCGGCGGCCGCCCGCCTGACG
GCGGAGGAGGAGGCGGAGGTGGAGCGGTTTGTGAGCAGCGTGCGGAGCCG
TGTGAAGCGGGAGCGGGCGCTGCTGCAGCCCTCCTTCACGGAGTTTGACC
GGCGGAACGAGGAGGCGTTTGTGAACTACCGCGAGTTCCTCCGGCACGCC
GACGTCTCCGCCCGCACCGGCACCAAGGCCTTCATCGACGATTTCGTCAT
GGGACGCACGCACGGCACCCCCCCCGCCGGCGGCGGCGGCGGCGAGGCCG
CAACAGCGGGGGGTGGTGGGTTCGGCGAGGCCGCTGCAGGCGGCGTCTCT
GTCGGGGGTTCGCCCGCAGCTGTTGGGGCTGGAGTCGGATAGGCGTTTGT
GAACTACCGCGAGTTCCTCCGGCACGCCGACGTCTCCGCCCGCACCGGCA
CCAAGGCCTTCATCGACGATTTCGTCATGGGACGCACGCACGGCACCCCC
CCCGCCGGCGGCGGCGGCGGCGAGGCCGCAACAGCGGGGGGTGGTGGGTT
CGGCGAGGCCGCTGCAGGCGGCGTCTCTGTCGGGGGTTCGCCCGCAGCTG
TTGGGGCTGGAGTCGGATAG
back to top