mRNA_S-ischiensis_contig9.20780.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20780.1
Unique NamemRNA_S-ischiensis_contig9.20780.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3158897..3161213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size595
Cds size594
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20780.1prot_S-ischiensis_contig9.20780.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3158897..3161212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817369.1928449-CDS-S-ischiensis_contig9:3158896..31589591622817369.1928449-CDS-S-ischiensis_contig9:3158896..3158959Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3158897..3158959 +
1695741062.1126065-CDS-S-ischiensis_contig9:3158896..31589591695741062.1126065-CDS-S-ischiensis_contig9:3158896..3158959Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3158897..3158959 +
1622817369.2045324-CDS-S-ischiensis_contig9:3159802..31601521622817369.2045324-CDS-S-ischiensis_contig9:3159802..3160152Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3159803..3160152 +
1695741062.1247704-CDS-S-ischiensis_contig9:3159802..31601521695741062.1247704-CDS-S-ischiensis_contig9:3159802..3160152Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3159803..3160152 +
1622817369.2155771-CDS-S-ischiensis_contig9:3161031..31612121622817369.2155771-CDS-S-ischiensis_contig9:3161031..3161212Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3161032..3161212 +
1695741062.1349924-CDS-S-ischiensis_contig9:3161031..31612121695741062.1349924-CDS-S-ischiensis_contig9:3161031..3161212Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3161032..3161212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20780.1

>prot_S-ischiensis_contig9.20780.1 ID=prot_S-ischiensis_contig9.20780.1|Name=mRNA_S-ischiensis_contig9.20780.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=198bp
GAAVGVGALIVFNGHDGVADEVCELFQAVTSSATPGAPPAAAGRGSPRGG
GVRCTVAGSNAACTTPSNSLSPPGGGGGGGGGGGDPAAAGVFPESPAEAL
ALVVGLGDALCAAHGEWPRGRFVDAFRSCTKPLARLSRNAISAEGPATAS
SSSSCSPPLPPLAATATAASDLSLRICNWMDQLLWATAAALQSAAAGG
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mRNA from alignment at S-ischiensis_contig9:3158897..3161213+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20780.1 ID=mRNA_S-ischiensis_contig9.20780.1|Name=mRNA_S-ischiensis_contig9.20780.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2317bp|location=Sequence derived from alignment at S-ischiensis_contig9:3158897..3161213+ (Schizocladia ischiensis KU_0333)
GGGGCAGCGGTTGGGGTTGGGGCGCTTATAGTATTCAACGGTCATGATGG
GGTGGCTGACGAGGTGAGAGAGCGGGCGGTGGTGGTTGGGGTGGGAGGCG
TGTTGTGTTTGTGTCGGTAGCGGATGAATGGGCGGTGCGCGAGGCAAGGC
CCGGTTCTTGTGGTTGAGTGAGTGAGTGAGTGCATGCGCATGGTACTACT
ATACTACTTCGACTTACTAGTACATACCTAGTACTGGAGCTCTGCTCGTA
CCGAGAGTACGTATGTACTCGTACTGTGCGTGGAAGACTTTACTCCAAGC
AGAGTACGAGTGTAGCAATTCTGCCAAGTGCTTACAGTAGTATGAATACT
GTACTTGGCAGTACATGGAGAGGGTTCTGAGAGCGGTGGCAGCGCTGCCA
TGGCTTGAGGAGCAGCAGCAGCGGCAGCAACAGCAGCAGCAGCAGCAGAG
CAGCAGCTCCAGCAGCAGTAGCAGTAGCCGCAGCCGAAGCACAGGCAGAG
GGAGAGGCATGGCAGAGGCAATGGTAGTGGCTACAGCAAACAGCAGCCAC
CACACCACCGCTACCACTACCACCGCCATCGCCGCCGCCGCCACCGCCAC
CGCCACCACCACCACCACGGCCACCACCACCACCGCCACCACCGCCACCG
CCGCCGCCGCCGCTACACACAACCATGACAATTTCTAGGCGCCAAGGCCC
GACCCCGCCTCGCTCACGCTCCCTCCCTCACTCACGCAGACACACACACA
CATACAAGCAAGACCACACACACACACACACACGCGCGCGCGTGCGCGGC
TTGCCTTCTGCCCACGACTGTCTTCTGACGCCCGCCCGCCCGCCTGCCCG
CCCGCCACCCCAATGTGTGACGGACGAACGGACCCCCCTCTCCCTCCCCT
TCCAAGGTGTGCGAACTCTTCCAGGCGGTGACCTCCTCGGCCACCCCTGG
AGCCCCTCCCGCCGCAGCCGGCCGGGGGAGCCCCCGCGGCGGCGGCGTCA
GATGCACAGTTGCCGGCAGCAACGCCGCCTGCACGACCCCGTCAAACTCC
CTGTCGCCTCCTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACCC
TGCAGCGGCGGGTGTTTTTCCCGAGTCGCCTGCGGAGGCGTTGGCGCTGG
TGGTGGGGCTCGGGGACGCGCTGTGCGCAGCTCACGGGGAGTGGCCCAGG
GGGAGGTTCGTGGACGCCTTCAGGAGCTGCACCAAACCCCTGGCACGCCT
CAGCAGGTGGGGCGCAGAGAGGGGGCGGGGAGCGTTAATTTAACCCTTTT
TCCCGGAGTAAATTGGACTGGCACACTAAAACCCTATGATTATATGGACC
CCAGGGGTAAAAGGGTTAAGTGCAGGGGTAGGTAGGGTAGGTGTGGACGC
CTTCCGGAGCTGCACCAAACCCCTGGCACGCCTCAGCAGGTGGGGCGCGA
CGGAGGGGGCAGGGAGGGTTAACCCCTTTACCCCTGGTAATTGGACTTAT
AACCCGAAGTTTCGAGTTAGGGCTGTCGGCATTGCATGCAAGGTTATGTC
GCAAGACAAACCAATGAGTACATATATATATATGTACTCATATTGTGCTT
GCCGTAGTCCCGGGACCATTGACCACGCGCCTCGGCCGAGACTTACGCGC
TAAAACCCTATGACTATACGGGCCCCAGGGGTAAAAGGGTTAAGTGCGCG
GCCGGGGCGGGCGAGTGCTGTGTGCTTGGCAGTATGTTTTGATTTGAAGC
TGCTGCCTGCTTGCTGCACGTGCTCCTTCTTGTGACCAGCGTGGCTTTCG
GGCTGGGGGGGGGGGCGGGGGAGATATAGCGGTGGCACACGCTGCGGTTC
TTTCAGTTTGTTTGGTGGCGTGGGGTGTTCGAGTGCAATAGTGAAGGACA
CGCTTTATTCGCCACGGAGGATACTGGCTGCGGCTGGCCGCGCGGGGTGA
GCGAAACCGAGCGACAGCGACAGGCAGCACTGTACTACTACAGTAGTAGA
CGCACAGGACAGCTACAGTTGCCTGTAGCGTTACCCACGCGCCAAGTGTC
TCTCATGTGGGACATACTGCCCACAACCGCACTGGTTGGGCAAGCAGCTC
ACGAGAACCCCCCACCTCCCCCAAAACCAACGCAGAAACGCCATCTCAGC
AGAGGGCCCCGCAACCGCCTCCTCCTCCTCATCCTGCTCCCCACCACTCC
CACCACTCGCGGCCACCGCCACCGCGGCGTCCGACTTGTCACTACGGATT
TGCAACTGGATGGACCAATTACTGTGGGCGACGGCGGCCGCGCTGCAGTC
AGCGGCGGCCGGCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3158897..3161213+

>mRNA_S-ischiensis_contig9.20780.1 ID=mRNA_S-ischiensis_contig9.20780.1|Name=mRNA_S-ischiensis_contig9.20780.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1188bp|location=Sequence derived from alignment at S-ischiensis_contig9:3158897..3161213+ (Schizocladia ischiensis KU_0333)
GGGGCAGCGGTTGGGGTTGGGGCGCTTATAGTATTCAACGGTCATGATGG
GGTGGCTGACGAGGGGGCAGCGGTTGGGGTTGGGGCGCTTATAGTATTCA
ACGGTCATGATGGGGTGGCTGACGAGGTGTGCGAACTCTTCCAGGCGGTG
ACCTCCTCGGCCACCCCTGGAGCCCCTCCCGCCGCAGCCGGCCGGGGGAG
CCCCCGCGGCGGCGGCGTCAGATGCACAGTTGCCGGCAGCAACGCCGCCT
GCACGACCCCGTCAAACTCCCTGTCGCCTCCTGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGACCCTGCAGCGGCGGGTGTTTTTCCCGAGTCGCC
TGCGGAGGCGTTGGCGCTGGTGGTGGGGCTCGGGGACGCGCTGTGCGCAG
CTCACGGGGAGTGGCCCAGGGGGAGGTTCGTGGACGCCTTCAGGAGCTGC
ACCAAACCCCTGGCACGCCTCAGCAGGTGTGCGAACTCTTCCAGGCGGTG
ACCTCCTCGGCCACCCCTGGAGCCCCTCCCGCCGCAGCCGGCCGGGGGAG
CCCCCGCGGCGGCGGCGTCAGATGCACAGTTGCCGGCAGCAACGCCGCCT
GCACGACCCCGTCAAACTCCCTGTCGCCTCCTGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGACCCTGCAGCGGCGGGTGTTTTTCCCGAGTCGCC
TGCGGAGGCGTTGGCGCTGGTGGTGGGGCTCGGGGACGCGCTGTGCGCAG
CTCACGGGGAGTGGCCCAGGGGGAGGTTCGTGGACGCCTTCAGGAGCTGC
ACCAAACCCCTGGCACGCCTCAGCAGAAACGCCATCTCAGCAGAGGGCCC
CGCAACCGCCTCCTCCTCCTCATCCTGCTCCCCACCACTCCCACCACTCG
CGGCCACCGCCACCGCGGCGTCCGACTTGTCACTACGGATTTGCAACTGG
ATGGACCAATTACTGTGGGCGACGGCGGCCGCGCTGCAGTCAGCGGCGGC
CGGCGGGAAACGCCATCTCAGCAGAGGGCCCCGCAACCGCCTCCTCCTCC
TCATCCTGCTCCCCACCACTCCCACCACTCGCGGCCACCGCCACCGCGGC
GTCCGACTTGTCACTACGGATTTGCAACTGGATGGACCAATTACTGTGGG
CGACGGCGGCCGCGCTGCAGTCAGCGGCGGCCGGCGGG
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