mRNA_S-ischiensis_contig9.20768.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20768.1
Unique NamemRNA_S-ischiensis_contig9.20768.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3057350..3058042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size693
Cds size639
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.5791144-UTR-S-ischiensis_contig9:3057349..30574031622817373.5791144-UTR-S-ischiensis_contig9:3057349..3057403Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3057350..3057403 +
1695741064.4199243-UTR-S-ischiensis_contig9:3057349..30574031695741064.4199243-UTR-S-ischiensis_contig9:3057349..3057403Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3057350..3057403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.590037-CDS-S-ischiensis_contig9:3057403..30580421622817373.590037-CDS-S-ischiensis_contig9:3057403..3058042Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3057404..3058042 +
1695741064.430236-CDS-S-ischiensis_contig9:3057403..30580421695741064.430236-CDS-S-ischiensis_contig9:3057403..3058042Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3057404..3058042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20768.1prot_S-ischiensis_contig9.20768.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3057404..3058042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20768.1

>prot_S-ischiensis_contig9.20768.1 ID=prot_S-ischiensis_contig9.20768.1|Name=mRNA_S-ischiensis_contig9.20768.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=213bp
MGLQVCVARALARAPSPCLDARTSRKNALCPSGMESTCIARATLSFVRCT
YTCLEICVMPVWYKSQACFTARRLVLGTCQVLCTMVARPAGPRRRASAVS
ASDPDRDKGRADERKNSNICRPRGGLPRYIRTRRAKATSCMSSTTEPAVW
ARRVRDKVAFRVSELDWGWQFSENSGRVCVVAGWGHVGSFVRLTHQATDF
CRYLNTALWQRLG
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mRNA from alignment at S-ischiensis_contig9:3057350..3058042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20768.1 ID=mRNA_S-ischiensis_contig9.20768.1|Name=mRNA_S-ischiensis_contig9.20768.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=693bp|location=Sequence derived from alignment at S-ischiensis_contig9:3057350..3058042+ (Schizocladia ischiensis KU_0333)
TAGCTGCGCCTGCACACACCGCTCGAGCCAAGTACTTCGAAGTACTTGCA
GTTGATGGGACTGCAGGTATGCGTGGCACGGGCATTAGCACGGGCACCCT
CTCCATGTCTAGATGCACGTACGAGTAGAAAAAATGCGTTGTGCCCCTCT
GGCATGGAAAGCACGTGCATAGCAAGAGCAACCCTCTCCTTTGTCAGATG
TACATACACGTGCTTAGAAATATGCGTTATGCCGGTCTGGTATAAAAGCC
AGGCATGCTTTACAGCCAGGCGCTTGGTCTTGGGTACATGCCAAGTGCTC
TGTACCATGGTGGCCCGCCCCGCCGGCCCCCGGAGACGGGCGAGCGCGGT
GTCCGCATCCGATCCGGACCGGGACAAAGGCCGGGCAGACGAGCGGAAAA
ATTCTAACATCTGCAGGCCCCGGGGCGGCCTACCACGGTATATCCGTACA
CGCCGCGCCAAGGCTACAAGCTGCATGTCTTCAACAACCGAACCTGCTGT
CTGGGCACGCCGGGTCAGAGATAAAGTTGCGTTTCGCGTGTCGGAGTTGG
ATTGGGGGTGGCAGTTCTCTGAGAACTCGGGGCGAGTTTGTGTCGTAGCG
GGGTGGGGGCATGTTGGATCGTTCGTGCGGCTGACCCATCAAGCTACAGA
CTTCTGTAGGTACTTGAATACAGCACTTTGGCAGCGGCTGGGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3057350..3058042+

>mRNA_S-ischiensis_contig9.20768.1 ID=mRNA_S-ischiensis_contig9.20768.1|Name=mRNA_S-ischiensis_contig9.20768.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1278bp|location=Sequence derived from alignment at S-ischiensis_contig9:3057350..3058042+ (Schizocladia ischiensis KU_0333)
ATGGGACTGCAGGTATGCGTGGCACGGGCATTAGCACGGGCACCCTCTCC
ATGTCTAGATGCACGTACGAGTAGAAAAAATGCGTTGTGCCCCTCTGGCA
TGGAAAGCACGTGCATAGCAAGAGCAACCCTCTCCTTTGTCAGATGTACA
TACACGTGCTTAGAAATATGCGTTATGCCGGTCTGGTATAAAAGCCAGGC
ATGCTTTACAGCCAGGCGCTTGGTCTTGGGTACATGCCAAGTGCTCTGTA
CCATGGTGGCCCGCCCCGCCGGCCCCCGGAGACGGGCGAGCGCGGTGTCC
GCATCCGATCCGGACCGGGACAAAGGCCGGGCAGACGAGCGGAAAAATTC
TAACATCTGCAGGCCCCGGGGCGGCCTACCACGGTATATCCGTACACGCC
GCGCCAAGGCTACAAGCTGCATGTCTTCAACAACCGAACCTGCTGTCTGG
GCACGCCGGGTCAGAGATAAAGTTGCGTTTCGCGTGTCGGAGTTGGATTG
GGGGTGGCAGTTCTCTGAGAACTCGGGGCGAGTTTGTGTCGTAGCGGGGT
GGGGGCATGTTGGATCGTTCGTGCGGCTGACCCATCAAGCTACAGACTTC
TGTAGGTACTTGAATACAGCACTTTGGCAGCGGCTGGGAATGGGACTGCA
GGTATGCGTGGCACGGGCATTAGCACGGGCACCCTCTCCATGTCTAGATG
CACGTACGAGTAGAAAAAATGCGTTGTGCCCCTCTGGCATGGAAAGCACG
TGCATAGCAAGAGCAACCCTCTCCTTTGTCAGATGTACATACACGTGCTT
AGAAATATGCGTTATGCCGGTCTGGTATAAAAGCCAGGCATGCTTTACAG
CCAGGCGCTTGGTCTTGGGTACATGCCAAGTGCTCTGTACCATGGTGGCC
CGCCCCGCCGGCCCCCGGAGACGGGCGAGCGCGGTGTCCGCATCCGATCC
GGACCGGGACAAAGGCCGGGCAGACGAGCGGAAAAATTCTAACATCTGCA
GGCCCCGGGGCGGCCTACCACGGTATATCCGTACACGCCGCGCCAAGGCT
ACAAGCTGCATGTCTTCAACAACCGAACCTGCTGTCTGGGCACGCCGGGT
CAGAGATAAAGTTGCGTTTCGCGTGTCGGAGTTGGATTGGGGGTGGCAGT
TCTCTGAGAACTCGGGGCGAGTTTGTGTCGTAGCGGGGTGGGGGCATGTT
GGATCGTTCGTGCGGCTGACCCATCAAGCTACAGACTTCTGTAGGTACTT
GAATACAGCACTTTGGCAGCGGCTGGGA
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