mRNA_S-ischiensis_contig9.20767.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20767.1
Unique NamemRNA_S-ischiensis_contig9.20767.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig9.20767.1 vs. uniprot
Match: A0A834G0Y7_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834G0Y7_RHOSS)

HSP 1 Score: 120 bits (301), Expect = 1.910e-26
Identity = 78/223 (34.98%), Postives = 120/223 (53.81%), Query Frame = 3
Query:   18 LHEVEEGKAYEVLLTTYGGLYRYRMKDVVKVSGFNGHTPRVQFLYRRGALLSVHSERTSEKMLSDALVAALRAVNGELREGEERLPPISLVDYTSEVNM-SGLPAHYSIYCELARGGGEGXXXXXXXXDVAGSGPLVSEEDLGRLATAMDAELGRLNYVYSCDRAQDNIGPLHVVRLEQGTFDKYRLQTISPETGTTDVNQFKMPRCVNNDRMRAIIRAGVVA 683
            L +VE G+ YEV++TTYGGLYRYR+ D+++V+GF+   P+V F+ R+  LLS+ +++T E  L  ++  A R +  E           +++DYTS  +  S +P HY IY EL                   S    S+E LGR   AM+  LG +    SC  A  +IGPL +  +  GTF++     IS       ++Q+K+PRCVN   +R ++ + VV+
Sbjct:  384 LADVEVGQEYEVVVTTYGGLYRYRIGDILRVTGFHNSAPQVLFVSRKNVLLSIDADKTDEADLQKSVETAGRLLRDESNA--------TVLDYTSYADSKSTIPGHYVIYWELV---------------APDSACWPSDELLGRCCLAMEESLGDI--YRSCRAADRSIGPLEIRVVRSGTFEEIMDYAISRGAS---ISQYKVPRCVNVAPIRNLLESRVVS 578          
BLAST of mRNA_S-ischiensis_contig9.20767.1 vs. uniprot
Match: A0A6A6KY97_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6KY97_HEVBR)

HSP 1 Score: 114 bits (286), Expect = 2.290e-26
Identity = 78/223 (34.98%), Postives = 119/223 (53.36%), Query Frame = 3
Query:   18 LHEVEEGKAYEVLLTTYGGLYRYRMKDVVKVSGFNGHTPRVQFLYRRGALLSVHSERTSEKMLSDALVAALRAVNGELREGEERLPPISLVDYTSEVNMSGLPAHYSIYCELARGGGEGXXXXXXXXDVAGSGPLVSEEDLGRLATAMDAELGRLNYVYSCDRAQDN-IGPLHVVRLEQGTFDKYRLQTISPETGTTDVNQFKMPRCVNNDRMRAIIRAGVVA 683
            L EVE GK YE+++TTY GLYRYR+ D+++V+GF+   P+  F+ R+  LLS+ S++T E  L  A+  A +     LRE        S+V+YTS  ++  +P HY IY EL                +  S    SE+ L   + A++  L   N VY   R + N IGPL +  ++ GTF++     IS       +NQ+K+PRCVN   +  ++ + VV+
Sbjct:   30 LAEVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDETELQKAVENASQL----LREFNT-----SVVEYTSYADVKTIPGHYVIYWELL---------------IKDSTNSPSEKVLSECSLAIEESL---NSVYRQGRVRYNSIGPLEIRLVKNGTFEELMDYAISRGAS---INQYKVPRCVNFTPITELLDSRVVS 222          
BLAST of mRNA_S-ischiensis_contig9.20767.1 vs. uniprot
Match: F6H697_VITVI (Uncharacterized protein n=25 Tax=rosids TaxID=71275 RepID=F6H697_VITVI)

HSP 1 Score: 119 bits (299), Expect = 3.560e-26
Identity = 82/226 (36.28%), Postives = 118/226 (52.21%), Query Frame = 3
Query:   18 LHEVEEGKAYEVLLTTYGGLYRYRMKDVVKVSGFNGHTPRVQFLYRRGALLSVHSERTSEKMLSDALVAA---LRAVNGELREGEERLPPISLVDYTSEVNMSGLPAHYSIYCELARGGGEGXXXXXXXXDVAGSGPLVSEEDLGRLATAMDAELGRLNYVYSCDRAQDN-IGPLHVVRLEQGTFDKYRLQTISPETGTTDVNQFKMPRCVNNDRMRAIIRAGVVA 683
            L  VE GK YE+++TTY GLYRYR+ D+++V+GF+   P+  F+ R+  LLS+ S++T E  L  A+  A   LR VN             S+V+YTS  +   +P HY IY EL                V  S    S+E LG+   AM+  L   N VY   R  DN IGPL +  ++ GTF++     IS       +NQ+K+PRCVN   +  ++ + VV+
Sbjct:  390 LAHVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVN------------TSVVEYTSFADTKTIPGHYVIYWELL---------------VKDSANSPSDELLGQCCLAMEESL---NSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGAS---INQYKVPRCVNFTPIMELLDSRVVS 582          
BLAST of mRNA_S-ischiensis_contig9.20767.1 vs. uniprot
Match: A0A2K1Z5B2_POPTR (Uncharacterized protein n=16 Tax=Saliceae TaxID=238069 RepID=A0A2K1Z5B2_POPTR)

HSP 1 Score: 119 bits (297), Expect = 6.520e-26
Identity = 80/224 (35.71%), Postives = 118/224 (52.68%), Query Frame = 3
Query:   18 LHEVEEGKAYEVLLTTYGGLYRYRMKDVVKVSGFNGHTPRVQFLYRRGALLSVHSERTSEKMLSDALVAALRAVNGELREGEERLPPISLVDYTSEVNMSGLPAHYSIYCELARGGGEGXXXXXXXXDVAGSGPLVSEEDLGRLATAMDAELGRLNYVYSCDRAQDN-IGPLHVVRLEQGTFDKYRLQTISPETGTTDVNQFKMPRCVNNDRMRAIIRAGVVAK 686
            L +VE GK YE+++TTY GLYRYR+ D+++V+GF+   P+  F+ R+  LLS+ S++T E  L  A+  A +     LRE        S+V+YTS  +   +P HY IY EL                V  S     +E L +   AM+  L   N VY   R  DN IGPL +  ++ GTF++     IS       +NQ+K+PRCVN   +  ++ + VV+K
Sbjct:  388 LADVELGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQTAVENASQL----LREFNT-----SVVEYTSHADTKTIPGHYVIYWELL---------------VKDSANSPGDEVLNQCCLAMEESL---NSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGAS---INQYKVPRCVNFTPIMELLDSRVVSK 581          
BLAST of mRNA_S-ischiensis_contig9.20767.1 vs. uniprot
Match: A0A068TPG8_COFCA (Uncharacterized protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068TPG8_COFCA)

HSP 1 Score: 113 bits (282), Expect = 7.140e-26
Identity = 80/223 (35.87%), Postives = 119/223 (53.36%), Query Frame = 3
Query:   18 LHEVEEGKAYEVLLTTYGGLYRYRMKDVVKVSGFNGHTPRVQFLYRRGALLSVHSERTSEKMLSDALVAALRAVNGELREGEERLPPISLVDYTSEVNMSGLPAHYSIYCELARGGGEGXXXXXXXXDVAGSGPLVSEEDLGRLATAMDAELGRLNYVYSCDRAQDN-IGPLHVVRLEQGTFDKYRLQTISPETGTTDVNQFKMPRCVNNDRMRAIIRAGVVA 683
            L +VE GK YE+++TTY GLYRYR+ D+++V+GF+   P+ +F+ R+  LLS+ S++T E  L  A+  A +     LRE        S+V+YTS  +   +P HY IY EL               D A S    S+E L     AM+  L   N VY   R  DN IGPL +  ++ GTF++     IS       +NQ+K+PRCV+   +  ++ + VV+
Sbjct:   27 LADVEIGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFRFVRRKNVLLSIDSDKTDEAELQKAVENASQL----LREYNT-----SVVEYTSFADAKTIPGHYVIYWELL------------VKDAAHS---PSDEALNGCCLAMEESL---NSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGAS---INQYKVPRCVSFTPIVELLDSRVVS 219          
BLAST of mRNA_S-ischiensis_contig9.20767.1 vs. uniprot
Match: A0A0U9HLX3_KLENI (Auxin-responsive GH3 family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HLX3_KLENI)

HSP 1 Score: 116 bits (290), Expect = 8.870e-26
Identity = 83/231 (35.93%), Postives = 127/231 (54.98%), Query Frame = 3
Query:   12 KMLHEVEEGKAYEVLLTTYGGLYRYRMKDVVKVSGFNGHTPRVQFLYRRGAL-LSVHSERTSEKMLSDALVAALRAVNGELREGEERLPPIS--LVDYTSEVNMSGLPAHYSIYCELARGGGEGXXXXXXXXDVAGSGPLVSEEDLGRLATAMDAELGRL-NYVYSCDRAQDNIGPLHVVRLEQGTFDKYRLQTISPETGTTDVNQFKMPRCVNNDRMRAIIRAGVVAKAA 692
            K+LHE+EE ++YE++LT   GLYRY ++DVVKV+GF    P+VQ+ YRRG L ++   E+ +EK L+ A+        GE+   E+ LP  S  ++DYT  ++    P  YS++ E                 V G+   V EE LG  A A DA L +  +YV+   RAQ  IG   +  +++G FD++R   +  E GT D  Q+K+PRC+     +A+ R  ++  +A
Sbjct:  177 KLLHELEEARSYELVLTNVSGLYRYGLEDVVKVTGFWHGLPQVQYEYRRGMLTITAKPEKVTEKDLAVAI--------GEM---EKWLPAESGRVLDYTVAIDTEADPERYSVFVE-----------------VNGNEETVMEEILGACADAFDASLQKNPDYVHYRLRAQ--IGTAEICLVKRGAFDEFRAWKV--EKGT-DTAQYKVPRCLKTPEQQAVFRTRLLRSSA 374          
BLAST of mRNA_S-ischiensis_contig9.20767.1 vs. uniprot
Match: A0A438EPK4_VITVI (Putative indole-3-acetic acid-amido synthetase GH3.1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EPK4_VITVI)

HSP 1 Score: 118 bits (296), Expect = 8.930e-26
Identity = 81/226 (35.84%), Postives = 118/226 (52.21%), Query Frame = 3
Query:   18 LHEVEEGKAYEVLLTTYGGLYRYRMKDVVKVSGFNGHTPRVQFLYRRGALLSVHSERTSEKMLSDALVAA---LRAVNGELREGEERLPPISLVDYTSEVNMSGLPAHYSIYCELARGGGEGXXXXXXXXDVAGSGPLVSEEDLGRLATAMDAELGRLNYVYSCDRAQDN-IGPLHVVRLEQGTFDKYRLQTISPETGTTDVNQFKMPRCVNNDRMRAIIRAGVVA 683
            L  VE GK YE+++TTY GLYRYR+ D+++V+GF+   P+  F+ R+  LLS+ S++T E  L  A+  A   LR VN             S+V+YTS  +   +P HY IY EL                V  S    S++ LG+   AM+  L   N VY   R  DN IGPL +  ++ GTF++     IS       +NQ+K+PRCVN   +  ++ + VV+
Sbjct:  390 LAHVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVN------------TSVVEYTSFADTKTIPGHYVIYWELL---------------VKDSANSPSDQLLGQCCLAMEESL---NSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGAS---INQYKVPRCVNFTPIMELLDSRVVS 582          
BLAST of mRNA_S-ischiensis_contig9.20767.1 vs. uniprot
Match: A0A2P6PLP5_ROSCH (Putative GH3 family protein n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6PLP5_ROSCH)

HSP 1 Score: 118 bits (295), Expect = 1.200e-25
Identity = 78/224 (34.82%), Postives = 118/224 (52.68%), Query Frame = 3
Query:   18 LHEVEEGKAYEVLLTTYGGLYRYRMKDVVKVSGFNGHTPRVQFLYRRGALLSVHSERTSEKMLSDALVAALRAVNGELREGEERLPPISLVDYTSEVNMSGLPAHYSIYCELARGGGEGXXXXXXXXDVAGSGPLVSEEDLGRLATAMDAELGRLNYVY-SCDRAQDNIGPLHVVRLEQGTFDKYRLQTISPETGTTDVNQFKMPRCVNNDRMRAIIRAGVVAK 686
            L +V  GK YE+++TTY GLYRYR+ D+++V+GF+   P+  F+ R+  LLS+ S++T E  L  A+  A + V  +L          S+V+YTS  +   +P HY IY EL                V  S    S E L +   AM+  L   N VY  C  A ++IGPL +  ++ GTF++     IS       +NQ+K+PRCVN   +  ++ + VV+K
Sbjct:  387 LVDVVVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQLAVDNATKLVLEKLNA--------SVVEYTSFADTKTIPGHYVIYWELL---------------VKDSAESPSSESLSQCCLAMEESL---NSVYRQCRVADNSIGPLEIRVVKSGTFEELMDYAISRGAS---INQYKVPRCVNFTPIMELLDSRVVSK 581          
BLAST of mRNA_S-ischiensis_contig9.20767.1 vs. uniprot
Match: A0A067L7Q1_JATCU (Uncharacterized protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067L7Q1_JATCU)

HSP 1 Score: 118 bits (295), Expect = 1.220e-25
Identity = 80/223 (35.87%), Postives = 120/223 (53.81%), Query Frame = 3
Query:   18 LHEVEEGKAYEVLLTTYGGLYRYRMKDVVKVSGFNGHTPRVQFLYRRGALLSVHSERTSEKMLSDALVAALRAVNGELREGEERLPPISLVDYTSEVNMSGLPAHYSIYCELARGGGEGXXXXXXXXDVAGSGPLVSEEDLGRLATAMDAELGRLNYVYSCDRAQDN-IGPLHVVRLEQGTFDKYRLQTISPETGTTDVNQFKMPRCVNNDRMRAIIRAGVVA 683
            L +VE GK YE ++TTY GLYRYR+ D+++V+GF+   P+ QF+ R+  LLS+ S++T E  L +A+  A +     L+E +      S+V+YTS  +   +P HY IY EL                V  S    S+E L +   AM+  L   N VY   R  DN IGPL +  ++ GTF++     IS       +NQ+K+PRCVN   +  ++ + VV+
Sbjct:  390 LVDVEVGKEYEFVITTYSGLYRYRVGDILRVTGFHNSAPQFQFVRRKNVLLSIDSDKTDEAELQNAVENASQL----LKEYKT-----SVVEYTSFADTKTIPGHYVIYWELL---------------VKDSANSPSKEVLNQCCLAMEESL---NSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGAS---INQYKVPRCVNFTPIMELLDSRVVS 582          
BLAST of mRNA_S-ischiensis_contig9.20767.1 vs. uniprot
Match: A0A4S4D4M4_CAMSI (Uncharacterized protein n=3 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4D4M4_CAMSI)

HSP 1 Score: 118 bits (295), Expect = 1.340e-25
Identity = 80/223 (35.87%), Postives = 119/223 (53.36%), Query Frame = 3
Query:   18 LHEVEEGKAYEVLLTTYGGLYRYRMKDVVKVSGFNGHTPRVQFLYRRGALLSVHSERTSEKMLSDALVAALRAVNGELREGEERLPPISLVDYTSEVNMSGLPAHYSIYCELARGGGEGXXXXXXXXDVAGSGPLVSEEDLGRLATAMDAELGRLNYVYSCDRAQDN-IGPLHVVRLEQGTFDKYRLQTISPETGTTDVNQFKMPRCVNNDRMRAIIRAGVVA 683
            L  VE GK YE+++TTY GLYRYR+ D++ V+GF+   P+  F+ R+  LLS+ S++T E  L  A+  A + V  E           S+V+YTS  +   +P HY IY EL               D   SG  +S+E + R   AM+  L   N VY   R  DN IGPL +  ++ GTF++  L   S   G + +NQ+K+PRCV+   +  ++ + VV+
Sbjct:  416 LANVEVGKEYELVITTYAGLYRYRVGDILLVTGFHNSAPQFHFVRRKNVLLSIDSDKTDESELQRAVENASQLVLSEFNA--------SVVEYTSYADTRTIPGHYVIYWELL------------LKDY--SGESLSDEVMSRCCLAMEESL---NSVYRQGRVADNSIGPLEIRVVKSGTFEE--LMDYSISRGAS-INQYKVPRCVSFTPIMELLDSRVVS 610          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A834G0Y7_RHOSS1.910e-2634.98Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]
A0A6A6KY97_HEVBR2.290e-2634.98Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]
F6H697_VITVI3.560e-2636.28Uncharacterized protein n=25 Tax=rosids TaxID=7127... [more]
A0A2K1Z5B2_POPTR6.520e-2635.71Uncharacterized protein n=16 Tax=Saliceae TaxID=23... [more]
A0A068TPG8_COFCA7.140e-2635.87Uncharacterized protein n=1 Tax=Coffea canephora T... [more]
A0A0U9HLX3_KLENI8.870e-2635.93Auxin-responsive GH3 family protein n=1 Tax=Klebso... [more]
A0A438EPK4_VITVI8.930e-2635.84Putative indole-3-acetic acid-amido synthetase GH3... [more]
A0A2P6PLP5_ROSCH1.200e-2534.82Putative GH3 family protein n=2 Tax=Rosoideae TaxI... [more]
A0A067L7Q1_JATCU1.220e-2535.87Uncharacterized protein n=1 Tax=Jatropha curcas Ta... [more]
A0A4S4D4M4_CAMSI1.340e-2535.87Uncharacterized protein n=3 Tax=Camellia sinensis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3053534..3057321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score118.2
Seed ortholog evalue5.3e-24
Seed eggNOG ortholog29760.VIT_03s0091g00310.t01
KEGG koko:K14487
KEGG Pathwayko04075,map04075
GOsGO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009719,GO:0009725,GO:0009733,GO:0010033,GO:0042221,GO:0050896
EggNOG free text desc.Indole-3-acetic acid-amido synthetase
EggNOG OGs2CMPM@1,2QR80@2759,37PYK@33090,3G8VB@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons5
Model size1057
Cds size747
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817400.4058814-UTR-S-ischiensis_contig9:3053533..30535471622817400.4058814-UTR-S-ischiensis_contig9:3053533..3053547Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3053534..3053547 +
1695741086.0213327-UTR-S-ischiensis_contig9:3053533..30535471695741086.0213327-UTR-S-ischiensis_contig9:3053533..3053547Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3053534..3053547 +
1622817400.4779267-UTR-S-ischiensis_contig9:3057025..30573211622817400.4779267-UTR-S-ischiensis_contig9:3057025..3057321Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3057026..3057321 +
1695741086.101878-UTR-S-ischiensis_contig9:3057025..30573211695741086.101878-UTR-S-ischiensis_contig9:3057025..3057321Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3057026..3057321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817400.418336-CDS-S-ischiensis_contig9:3053547..30536211622817400.418336-CDS-S-ischiensis_contig9:3053547..3053621Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3053548..3053621 +
1695741086.0337234-CDS-S-ischiensis_contig9:3053547..30536211695741086.0337234-CDS-S-ischiensis_contig9:3053547..3053621Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3053548..3053621 +
1622817400.4290633-CDS-S-ischiensis_contig9:3054946..30551151622817400.4290633-CDS-S-ischiensis_contig9:3054946..3055115Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3054947..3055115 +
1695741086.0465734-CDS-S-ischiensis_contig9:3054946..30551151695741086.0465734-CDS-S-ischiensis_contig9:3054946..3055115Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3054947..3055115 +
1622817400.4394422-CDS-S-ischiensis_contig9:3055521..30556861622817400.4394422-CDS-S-ischiensis_contig9:3055521..3055686Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3055522..3055686 +
1695741086.0608404-CDS-S-ischiensis_contig9:3055521..30556861695741086.0608404-CDS-S-ischiensis_contig9:3055521..3055686Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3055522..3055686 +
1622817400.4521658-CDS-S-ischiensis_contig9:3056200..30563651622817400.4521658-CDS-S-ischiensis_contig9:3056200..3056365Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3056201..3056365 +
1695741086.0734618-CDS-S-ischiensis_contig9:3056200..30563651695741086.0734618-CDS-S-ischiensis_contig9:3056200..3056365Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3056201..3056365 +
1622817400.4664736-CDS-S-ischiensis_contig9:3056851..30570251622817400.4664736-CDS-S-ischiensis_contig9:3056851..3057025Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3056852..3057025 +
1695741086.0873468-CDS-S-ischiensis_contig9:3056851..30570251695741086.0873468-CDS-S-ischiensis_contig9:3056851..3057025Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3056852..3057025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20767.1prot_S-ischiensis_contig9.20767.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3053548..3057025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20767.1

>prot_S-ischiensis_contig9.20767.1 ID=prot_S-ischiensis_contig9.20767.1|Name=mRNA_S-ischiensis_contig9.20767.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=249bp
MLHEVEEGKAYEVLLTTYGGLYRYRMKDVVKVSGFNGHTPRVQFLYRRGA
LLSVHSERTSEKMLSDALVAALRAVNGELREGEERLPPISLVDYTSEVNM
SGLPAHYSIYCELARGGGEGGGGGGSGGDVAGSGPLVSEEDLGRLATAMD
AELGRLNYVYSCDRAQDNIGPLHVVRLEQGTFDKYRLQTISPETGTTDVN
QFKMPRCVNNDRMRAIIRAGVVAKAAASPAAAAAAATTANASQPTPAP*
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mRNA from alignment at S-ischiensis_contig9:3053534..3057321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20767.1 ID=mRNA_S-ischiensis_contig9.20767.1|Name=mRNA_S-ischiensis_contig9.20767.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3788bp|location=Sequence derived from alignment at S-ischiensis_contig9:3053534..3057321+ (Schizocladia ischiensis KU_0333)
AGGGGGCCGTCAAGATGCTGCATGAGGTGGAAGAGGGGAAGGCCTACGAG GTGCTCCTGACCACGTACGGGGGCCTGTACCGATACCGGTGAGGCCCTGC TGTTACTAGTAGCGTTGTGAATGGTGCCGTTTTTTACCGGTCGGTACCAG TTAGCTGGTGTAGCCGGTTAACCGATTGCCGGTGGCCGATCGTGTAGCCG GAGCGGGTGACGTGACAGCTATGTGTTGATTTTGGCAAAATACATGAGCC GTGACACAACTGGTTCAAACCGACCGGTCACAAGACCGGTTAGCAGGTAC AGTGGTAGACCTTGCCAGCTCACAACTCTACCTACTGTATGTACGTATGC AAGCGCATCGTGTCATTCCGGGCTTGGCCAAGTGCGCGGCCTGGACGGTT CAAGCCCCTGGGGCATGCTCCGTCCCGGCCTAGTTGGGATGCGAGCATGG CTCAATAGCTACTCTCTTCCCCTCACCCCCTCCCCCTTCCCCTGGCGAGC TAAGGAAGGGCCACCCTGTTGAGGTTTTTAGTGACGTGGCCTGCACCGCG CCCTGTGTTGTTCCTGTTAACCACGCGATTGCGCATATATATACTGCATG GCCACCGACTGTGCTGGTCTACGAAGCACACTTTAGGTCCATTGCAGGGC TACTGCTCCAGAGGAGTTGTACGGCATGTCACATTACATCATATCACATC ATGTCACGGCTTAGACATCACGTCACGCCACATCACATCACAGCGCATCA CATCACATCACATCACGTCACATCACATCACACCGCATCACATCACATCA CATCACGCCGTGTCACATCACATCACATCACATCACATCACGTCACATCA CACTTCGTCACACCATATCACATCACGTCACGTCACGCCTTGTCACATCA CGTCATGTCACACCTCGTCACACCACACCACGCCACACCACATCACCCCA CACCACGCCACACCACACCGCACCACACCACGCCACACCACACCACGCCA CACCACACCACACCATATCACACCACACCGCATCACACCACACCACACTC CCCACCCCACCCCATCCCATCCCATCATGTCGCGCACACACCAGTGATGG AATGAATATCTAAGCAAATCAACCTATTATCGGGGGCAGTACTGATCTAC ACATCTATCGATAGTCGATATTCGATAGTTTGACCCACACCAAATCCAAG TAGCCACATAGTAACCCCACCCACAAATCAGTCGAGCCCGATAACTATCT ACTGGTGGATATCCCGTCACTGGCCCCTGTCCCATTGGGGTCACCCCTGT GATGTCAATGATGTGATGTGATGTGATGTGATGTCAAACTACAGTAAATT AGAGTGCACATCACATCACATCACATCATTGCTGCATCGATATTCCATCA CTGGCACGCACAGGATGAAGGACGTGGTTAAGGTGTCCGGGTTCAACGGG CATACCCCCCGCGTGCAGTTTCTCTACCGGCGGGGGGCCCTGCTGAGTGT TCACTCGGAAAGGACCAGCGAGAAGATGCTCTCAGACGCACTGGTGGCAG CACTGCGTGCCGTCAACGGGGAACTCCGTGAGGCGAGTAGTTCCAAGTAC TTGCTGTACTCGAGTACTTCGAAGCACTCAGTGCACTTGAGTGCTTCGGA ACGCTTGTCGCACTTAAGCACTTCAAAGCACCAAGTATTTCCGAGCAACT GCGAGATACATGGGATTTTGGTGTACAGCGAAGTACTTGTACTGTAGGTA CACTCGTACAGCACCTACTTTAGAGAGTGCTGCGTAGAGCTCTAGCGGCA CGCTGCTCTGCGTGCTTCTATGCGTGGGAGTGCTGGGGAGTTCTGCTGTC CTGTCCTGTCCCATCCTGTACAGTACAGTACTGTACAGTAGTACACGTAA GCCTGCGTTTATTTATTTTCGTGCAGCAGTCCCCCCCCCCCGTCTCTCGG CTCACTCCAACCCCCTGCGGCGGCCGTCGCCACAGCAGGGCGAGGAGCGA CTGCCGCCCATCTCACTGGTGGACTACACCTCTGAAGTTAACATGTCAGG GCTTCCCGCACACTACAGCATATACTGCGAGCTGGCCAGGGGGGGGGGCG AGGGCGGCGGCGGAGGTGGCAGCGGCGGGGATGTTGCTGGCAGCGGCCCT CTGGTGAGCCGCGCCAAAGCAAGCCGGGGGTTACAAGAGACCCCTCCTCT ACTGTTATTCCCTCCTGCCCTCTTCCTTCCTTGTTTCTCTTTGTTTTCTG CTTTATATGCCCTGCGAGTGAAGGCGAGTGAACGGAAGGGCTTCCGGGGG TGGGGTCCTGAACTCGCGTAAGTAGGGACACCTCTTCTTTCCCACTCGCT TGTTTGTCTTCTCGCAAAAAACTGTAGCTCCCACCAGCCTCGGGCTGGGC CTGCCGCCGCCCTGGCAGGGCCCGCCTCAATACTGTAGGTACAGTGCGTG CAGTACTGTAGTAGCAGCGACATTCCATGTTTTCGTGTCGTGGACCTGTA TTTCCTGTTGCAAAATAGTAGGTGTTGATGTTGGTTGCCTTACGTGCTGC AATGGGATGACCACTAAGTACTATGAGAACACTCAATCTCGCACACGTGC GATTGTACCTCGTTACAATTTACTTCCGGAAGTATAGGAATCACTGCAAT GACGCACGTCTTCCCAGGTTAGCGAGGAGGACCTGGGGCGGCTGGCCACG GCCATGGACGCGGAGCTGGGGCGGCTGAACTACGTCTACTCCTGCGACCG GGCACAGGACAACATCGGTCCCCTGCACGTGGTCCGGTTGGAGCAGGGCA CCTTCGACAAGTACCGCCTTCAGACCATTTCGGTGCGTGCTAACACACAC GTGTCGTGTGTGTGTGTGCGTGCGCGCACGTGTGTGTGTGTGCGTGCATG TGCGTGTCTGTGCGTGCGTGCGTGTGTGTGGGGCAGGGCACGATCGAGAA GTACCGCCTTCGGACCGTTGAGGTGCGTGCCTGCGTGTGTGTGTGTGCGT GTGTGCGTGCGTGTGCGTGTGCGTGCGTGTGCGTGCGCGTGCGTGCGTGT GTGCGTGTATGCGTGTGCGTGCGTGCGTGCGTGTGTGCGTGCGTGTGCGT GTGCGTGCGTGCGTGCGTGCGTGTGTGTGCATGTGTGTGCGTGTAGTGTC CAGCACTTGCAGACAATTCGCAGCATCAACTACTTATCTCATGCTTGTAC TTCAAGCACTTCCAAGCACTCGAGGGAGATCATCCCACGCACAGCACGCC GTAGTACCGCCTTAACGGCCCGTTCTGCCCCCCTCCCCTCCCCCTTCCCT CCCCCTCCCCCGCACCAGCCCGAGACCGGCACCACGGATGTCAACCAGTT CAAGATGCCGCGCTGCGTCAACAATGATCGCATGCGCGCCATCATACGAG CAGGGGTCGTGGCCAAGGCTGCTGCATCCCCCGCCGCCGCCGCCGCCGCC GCCACCACCGCCAACGCCTCCCAGCCGACCCCAGCCCCTTGAGCCCTGCC GGCGCCGCCCCATCTTCCGTCGCCGCAGCCGCCGCCGCCGCCGCCGCCAC TGCCGCTGCCACCGTCGCTGCCACCAAGGCCCCCCGGCCGACCCCCGCCC CTTGAGCCCTTCCGGCGCCGTTCCAGCAAGGGATAGAGAGCTCTAGTCCT CAAATTGCCTAGAAGTGCTTGTCGTCCCCTTGATGGCACACGTACTGTAG GTTTGATTTCTTCGTTCCCCCCCCGCCGGTGGTGGGTGCATGATTGGTAT CGGCGGGCGGGCTTTGGCCCCCGGCCTCGATGATGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3053534..3057321+

>mRNA_S-ischiensis_contig9.20767.1 ID=mRNA_S-ischiensis_contig9.20767.1|Name=mRNA_S-ischiensis_contig9.20767.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1494bp|location=Sequence derived from alignment at S-ischiensis_contig9:3053534..3057321+ (Schizocladia ischiensis KU_0333)
ATGCTGCATGAGGTGGAAGAGGGGAAGGCCTACGAGGTGCTCCTGACCAC
GTACGGGGGCCTGTACCGATACCGATGCTGCATGAGGTGGAAGAGGGGAA
GGCCTACGAGGTGCTCCTGACCACGTACGGGGGCCTGTACCGATACCGGA
TGAAGGACGTGGTTAAGGTGTCCGGGTTCAACGGGCATACCCCCCGCGTG
CAGTTTCTCTACCGGCGGGGGGCCCTGCTGAGTGTTCACTCGGAAAGGAC
CAGCGAGAAGATGCTCTCAGACGCACTGGTGGCAGCACTGCGTGCCGTCA
ACGGGGAACTCCGTGAGGATGAAGGACGTGGTTAAGGTGTCCGGGTTCAA
CGGGCATACCCCCCGCGTGCAGTTTCTCTACCGGCGGGGGGCCCTGCTGA
GTGTTCACTCGGAAAGGACCAGCGAGAAGATGCTCTCAGACGCACTGGTG
GCAGCACTGCGTGCCGTCAACGGGGAACTCCGTGAGGGCGAGGAGCGACT
GCCGCCCATCTCACTGGTGGACTACACCTCTGAAGTTAACATGTCAGGGC
TTCCCGCACACTACAGCATATACTGCGAGCTGGCCAGGGGGGGGGGCGAG
GGCGGCGGCGGAGGTGGCAGCGGCGGGGATGTTGCTGGCAGCGGCCCTCT
GGGCGAGGAGCGACTGCCGCCCATCTCACTGGTGGACTACACCTCTGAAG
TTAACATGTCAGGGCTTCCCGCACACTACAGCATATACTGCGAGCTGGCC
AGGGGGGGGGGCGAGGGCGGCGGCGGAGGTGGCAGCGGCGGGGATGTTGC
TGGCAGCGGCCCTCTGGTTAGCGAGGAGGACCTGGGGCGGCTGGCCACGG
CCATGGACGCGGAGCTGGGGCGGCTGAACTACGTCTACTCCTGCGACCGG
GCACAGGACAACATCGGTCCCCTGCACGTGGTCCGGTTGGAGCAGGGCAC
CTTCGACAAGTACCGCCTTCAGACCATTTCGGTTAGCGAGGAGGACCTGG
GGCGGCTGGCCACGGCCATGGACGCGGAGCTGGGGCGGCTGAACTACGTC
TACTCCTGCGACCGGGCACAGGACAACATCGGTCCCCTGCACGTGGTCCG
GTTGGAGCAGGGCACCTTCGACAAGTACCGCCTTCAGACCATTTCGCCCG
AGACCGGCACCACGGATGTCAACCAGTTCAAGATGCCGCGCTGCGTCAAC
AATGATCGCATGCGCGCCATCATACGAGCAGGGGTCGTGGCCAAGGCTGC
TGCATCCCCCGCCGCCGCCGCCGCCGCCGCCACCACCGCCAACGCCTCCC
AGCCGACCCCAGCCCCTTGACCCGAGACCGGCACCACGGATGTCAACCAG
TTCAAGATGCCGCGCTGCGTCAACAATGATCGCATGCGCGCCATCATACG
AGCAGGGGTCGTGGCCAAGGCTGCTGCATCCCCCGCCGCCGCCGCCGCCG
CCGCCACCACCGCCAACGCCTCCCAGCCGACCCCAGCCCCTTGA
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