mRNA_S-ischiensis_contig9.20761.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20761.1
Unique NamemRNA_S-ischiensis_contig9.20761.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20761.1 vs. uniprot
Match: A0A835YNK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNK7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.650e-8
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:  691 ATRVGAARASGLLRSSTGNTAGAACMVGAQRGMTTFDDREKGEETVFMRQKEKALLSKLLKKMKAQEDGGRAELMEILGDNKLPDAVIERLLDWK 975
            A R+ A R  G + S+   T   A    A  G  +F++REKGEE V +RQ+EK LL KL +  K        EL E+LG ++LPD V+E+L++WK
Sbjct:    2 ALRLAALRV-GQVSSAALRTPAIAISTRAMNGYISFNEREKGEELVHIRQQEKELLLKLRQNKKI----ANVELKELLGPHQLPDDVLEKLIEWK 91
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YNK7_9STRA1.650e-842.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3005009..3009717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_002080.1
Exons3
Model size1302
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20761.1prot_S-ischiensis_contig9.20761.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3005324..3009276 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817400.0609407-UTR-S-ischiensis_contig9:3005008..30053231622817400.0609407-UTR-S-ischiensis_contig9:3005008..3005323Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3005009..3005323 -
1695741085.730784-UTR-S-ischiensis_contig9:3005008..30053231695741085.730784-UTR-S-ischiensis_contig9:3005008..3005323Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3005009..3005323 -
1622817400.1126988-UTR-S-ischiensis_contig9:3009276..30097171622817400.1126988-UTR-S-ischiensis_contig9:3009276..3009717Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3009277..3009717 -
1695741085.7824-UTR-S-ischiensis_contig9:3009276..30097171695741085.7824-UTR-S-ischiensis_contig9:3009276..3009717Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3009277..3009717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817400.0750284-CDS-S-ischiensis_contig9:3005323..30054141622817400.0750284-CDS-S-ischiensis_contig9:3005323..3005414Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3005324..3005414 -
1695741085.7514458-CDS-S-ischiensis_contig9:3005323..30054141695741085.7514458-CDS-S-ischiensis_contig9:3005323..3005414Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3005324..3005414 -
1622817400.0881002-CDS-S-ischiensis_contig9:3006379..30064691622817400.0881002-CDS-S-ischiensis_contig9:3006379..3006469Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3006380..3006469 -
1695741085.762124-CDS-S-ischiensis_contig9:3006379..30064691695741085.762124-CDS-S-ischiensis_contig9:3006379..3006469Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3006380..3006469 -
1622817400.0992508-CDS-S-ischiensis_contig9:3008911..30092761622817400.0992508-CDS-S-ischiensis_contig9:3008911..3009276Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3008912..3009276 -
1695741085.7718914-CDS-S-ischiensis_contig9:3008911..30092761695741085.7718914-CDS-S-ischiensis_contig9:3008911..3009276Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3008912..3009276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20761.1

>prot_S-ischiensis_contig9.20761.1 ID=prot_S-ischiensis_contig9.20761.1|Name=mRNA_S-ischiensis_contig9.20761.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=182bp
MVATVQQPASRRFRFELFFFSTVPSGVLSKQLASAAMALSAAVVLSRFVP
LFLFFYSSIRRAELSKQLASAAMALSAAAILSRATRVGAARASGLLRSST
GNTAGAACMVGAQRGMTTFDDREKGEETVFMRQKEKALLSKLLKKMKAQE
DGGRAELMEILGDNKLPDAVIERLLDWKHHE*
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mRNA from alignment at S-ischiensis_contig9:3005009..3009717-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20761.1 ID=mRNA_S-ischiensis_contig9.20761.1|Name=mRNA_S-ischiensis_contig9.20761.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4709bp|location=Sequence derived from alignment at S-ischiensis_contig9:3005009..3009717- (Schizocladia ischiensis KU_0333)
CACGTGGTGCTTGCCGTAGTCCCGAGACCACTGAAAGTAAAAAGCCAATA
TATGTACTTCAATTACTATATATGTGCTCATGTGGTGCTTGCCGTAGTCC
CGAGACCATGGACCACAATGAGGTTCTTATTTCTTCTTCGTCAGGGTGCT
GCTTTCCACAGGCGCGTTGCGAGCACAAGCGTGCCCTCCCTTGCTACAGT
ACTCGTACAACAACCCAGCTTCCCGACGTTTCGTTTCACTGGTTCTTTTT
TTTTCTACTAGTTCCATTCGGCGTGCTGAGCGAACAACTCGCGAGTACTG
CCATGGCCCTCTCCGCGGCTGCCGTTTTCTCATGGGCCACCCGCCGTTTC
GTTCCGCAGTTTCTTTTTTTTTCTACAGTTTCATTCGGCTTGCTGAGCTG
AGCGAACAACTCGCAAGTGCTGCCAGCGTGTTCCTGCTGCCATGGTTGCT
ACAGTACAACAACCAGCTTCCCGCCGTTTTCGTTTTGAACTGTTCTTTTT
TTCTACAGTTCCATCCGGCGTGCTGAGCAAACAACTCGCGAGTGCTGCCA
TGGCGCTCTCCGCGGCTGTCGTTCTCTCACGTTTCGTTCCGTTGTTTCTT
TTTTTCTACAGTTCCATTCGGCGTGCTGAGCTGAGCAAACAACTCGCGAG
CGCTGCCATGGCCCTCTCCGCGGCTGCCATTCTCTCACGGGCCACCCGCG
TCGGCGCGGCGCGGGCCTCCGGGCTGCTGCGCTCTTCCACCGGCAACACG
GCCGGCGCGGCGTGCATGGTGGGGGCCCAGCGGGGGATGACCACGTTCGA
CGATAGGTGAGAGGGTCACGGTGGAGGTGGAGGGAGGGAGGGGGAGAGGA
GGGATGGAGGGGGGTAGTGAGGCAGGGAGGGAGGGAGGGGAGAGGAGGGG
CGAGGGAAGAAGGGGAGGAGGGGGGGCTGCACACACACGCAGGCGCACAC
CCCCACACATACTACAGTAATACTTACAAGCGATACCGTGGGCGCGTTTT
TCATGCTGGGCCGTGCCGCTCCCCCTCGGTTCTCTCCGCTCTCACGTGTA
CTGGAGATGTTGGAAGAAAATGTGTCAAAAGGTTATGAGGGGAAATCACC
GCACGCAAGCACATAAATGCGCGCACATGTGGCGTGCATCCAGCGCCCAT
AAGTTTAGTTGCAGGCTTGTCAGCAGGCCATGTGCACGGCGGCCTACCCT
ACGCGTCGATAGACGCCTCCCAGGTCCTTGGCTAGTCCCGAGACCATTGA
ACAACTGCCCCGACCCACTGACTATAGACGGAGCCGCGTGTGATGTGATT
GATGGTGGTGGGATGGTATGTGATGTGATGTGTACTCTTAAAGTTGAGTA
TTATAAGGAACAACACGGGTTGAGTAGTTTGACATCACATGGCATCAACA
TCGCATTGCATTGCATTGCGCCTTACCGAGGCGGAACAGCAAGGTACCCA
AAAGGTACTTGACATATAATTGCTACAGCGGTAGAAGTATACATACAGCA
CGGCATGTGCTCCCTGGCCTAAGTAGCTGCCTTGCGGCATTGCCTTTCCG
TGCTTCGTGGACAGCCCGAAGCGAAACTTTGGGTTTGCCCTCCGACAGAA
GTAGTACTTTGGCCACGGACTCTGAACGATACCGTGCATGGATAAAGTCA
AACCATTGGAGGACTTACTAACTATAGTATATAGTTACATGAAAACTTCA
GGTTTGTCAGTAGTTACCCACTCCCAAAGTATGTAGCCGTTGACACCTCA
ACTATACTACGGTATGCATGGATATAGTCAAACCATTCAAGGGCTGCTAG
CTATACTACTTCCGAGAGTATATACTTCGAAGTAGTGAAGTGCAAACTTT
GGGTCTGCCCTCCGACAGCGTGTCAGTAGTTACGTACTGTACTCCCGAAG
TGTGTAGCCGTTGACTCTCAACTATACTATGCTGCTTGGATACAGCTGAG
CCATGTGAGGACTACGAACTGTACCCTATAGTTGAGTTGGCACTTCGGGG
TTGCCCTCCGACTGTAGAGTACCGTGAAAAGGGCGGTGTATAAGGAACCC
CCTTTGCATAGGTACCCTATACTTGAGTTAAAACTTCCTTTTTGGGGGGT
TGCCCTACGACTGTGCCGTAAAAATAGGGCAGTGTATAAGGAGCCCCCTT
TGTAAAGGGAACCCCCCCCGTACACGGAACCCCCTCGGTAAACCTCAGGG
CAAAAGACACTGTCACAGGGGGGGCTTTGTATACGGATCCCCCTTGGGCC
TCGGGGGTCCAAGTGGCAGCACTGACCCTCAGCTTGAACACGGCCACCGT
TGTGCCAGCACCGCTGATGTGAGATTTAGGTACTGTAGTGTTTCGAAGTG
GGCTGCCCTTGTGCCTACCCAACCAAGCTCAGGGAGTGCAGTTTTCTGTT
TCTTCTTGTGGGGGCCTGGTGTGTGCCATTGACCACGTGCCGTTGTCGAG
TACTGTGCTGTACTGTACTGTGCTCCCAAGCACACACGGTACTGCTGTAC
TCTGTGCTCTGTACAGCGCAGTATGTACTTCGAAGCAGTACTGTACCGTG
CTGCACCGCGCTGCCAAGTACTGCAATCGTCGGAGAGATGTTGCCCCCCC
ATGCCCTTTTTCGGGAGAACTTTTCTTCTGAATACTGGCCGGATTCGTGT
GGGAAAACTCGGGAAATCGCCCTCGGGCCCCGGACAATTTGGGACCCACT
CGGCGAGAAATATTCGCCCGAAAATTGTCCCGTGGGGGCACCATCTCTCC
GACGATTACGATATACTTGCCAGCCGGTGCACAGCTGTACTTTACGGCCG
ATTTGCTCCGACGTCCGTACTTCCGCGCCTATGTACTGTATGGCGTACTG
TACGGCATACAGTACACGGCACAGTACTCCGGTACTGTGGAATACAGTAC
AGTAGCGGAGTAGTGCGCACTGCCCAACTGGCTGGGCTTGACTCCCCCCC
CCCCCCAGCCTTCCCAACAAGGAAGGAGAGGGTGGAAGCAGCCAGCCTCC
CCAACAACAGAGGAAACAGTGCTCTGTCCCGTAGGGGCACCCCTGTGGGA
CGCGTGGCCATGGTCATACTCGAAGTATAGCTCCAGCAGGCACCTCATGA
GTAACCCACCCTCCCTTGCCCCCCGTGCCCCTCCTTTGTTTTTTTCCCGG
GCCCGGCCTGCCCACCTTGAACACGCCCTTGCCCCCCCCCGCTCCGCTGC
GGAACGGAATGGCGGCATGTGGCCCCGTGGTCGCGAACGAACACCCAGGG
AAAAGGGGGAAGAGACGGTGTTCATGAGGCAGAAGGAGAAGGCCTTGCTG
AGCAAGCTTCTCAAGAAGATGAAGGCTCAGGAGGACGGGTGAGAAGAAAC
CCACGGCGTCCGTTGGCTTTAGCTCCTCTCCAGTGCCTCGCTGCTGCACA
GGGTTGGCACTTGGCGGTTAGTCAGGGCCTACTCTAATTTACCTTCATTT
CGGGTCTAACTACCCCAGTTACCTCTAATTAAGGGCCTAAAAGGGCAGCA
CTTAGGGGCTAGGTGCCAACCCTGTCGACGCTGCAGGGGTTGTGTACTGA
CTGCGCCTGTCGCCAGAGCCTGGCCGACACTCACGAGAAGCACACTCAAT
TCTTCAATGGGATAGCTAGTAGTACGAGAACACTCACTCTCGCACACGTG
CGATTGTAACTCGCTACAATTCGTATGAATCACTCACGAGAAGCGTGGGT
TGCGGGCGCAGCGTCCCCGCGAGCGCTTCCTACTTAGGAGTGCATGGGAG
CGCAGGCGAAGGGCTGCCTTCCTGCAATCGCTGCTTGTAGCCGAACGACA
GGTTATCAGCGCACCTTCCGATAGCACCCGCTTGGCTTGCTTTGCGTAAC
CCACACCATTTCTCTCTTCTCTTCTCTCTCTCTGTCTCTTTGCCTCCACC
CTCCTCCACCACCGCCCCCCCCTCTCCCTCCCCCACCCCCCCCTTTCGCC
CCCGCTACCTCTCCATCTCCATCTTCCCTGCTCTCTCTCCTCCCCCGCCC
CCCTACCCCTCCCTTTCCCTAACCCCCTCTTGCCCCCGCGACAGCACCTC
TCCTGAACTAGTACGACAACACTCAATCCTTGAACGGGATAGCCACTACT
ATGAGAACAATCAGTCTCACACACATGCGATTGTACCTCGTTGCCATTTA
CTTCCAAGTACTACAAGGAACAACACGGGGCGAGGTGCGGGCCATGTCAC
TAGAGACCTCAACAATGGCCCTTCCTTAGCTCGCCAGGGGAAATACTTTC
AAGTATATATTAACACCACTTCTCCTGCACTACTCTCGCCCCCACGTCTG
CAGGGGCCGTGCCGAGCTGATGGAGATCCTTGGAGACAACAAGCTCCCGG
ACGCCGTCATCGAGCGACTCCTGGACTGGAAGCACCACGAATAAACAGCG
GCCTTTGCTGACGGGGCCGAGGGTGCCCGCCCCGATTCCTGAAAGCACCG
CGAATAGACACCAGCATTTTGCCGAGGGGGTCAAGTGTGCCCGGCCCGAT
TCAAGAAAGCACCACGAACAAACAGCGGCCTTTTGCCGAGGGGGACAAGG
GTGCCCGCCCCGATCTGTCCTCTGGACACGCACGCGCCGGCCCCGCTGGT
GGCGCCTCCCTGCCCCCGGCAAAAACGACACGGTTAACGTGCTGTTTGTT
TCCCCGGGGGCATGTACGTACAGGAGGGGTGTCCTGGGGGGAGGGGGCGG
ACGGAGGTA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3005009..3009717-

>mRNA_S-ischiensis_contig9.20761.1 ID=mRNA_S-ischiensis_contig9.20761.1|Name=mRNA_S-ischiensis_contig9.20761.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1092bp|location=Sequence derived from alignment at S-ischiensis_contig9:3005009..3009717- (Schizocladia ischiensis KU_0333)
ATGGTTGCTACAGTACAACAACCAGCTTCCCGCCGTTTTCGTTTTGAACT
GTTCTTTTTTTCTACAGTTCCATCCGGCGTGCTGAGCAAACAACTCGCGA
GTGCTGCCATGGCGCTCTCCGCGGCTGTCGTTCTCTCACGTTTCGTTCCG
TTGTTTCTTTTTTTCTACAGTTCCATTCGGCGTGCTGAGCTGAGCAAACA
ACTCGCGAGCGCTGCCATGGCCCTCTCCGCGGCTGCCATTCTCTCACGGG
CCACCCGCGTCGGCGCGGCGCGGGCCTCCGGGCTGCTGCGCTCTTCCACC
GGCAACACGGCCGGCGCGGCGTGCATGGTGGGGGCCCAGCGGGGGATGAC
CACGTTCGACGATAGATGGTTGCTACAGTACAACAACCAGCTTCCCGCCG
TTTTCGTTTTGAACTGTTCTTTTTTTCTACAGTTCCATCCGGCGTGCTGA
GCAAACAACTCGCGAGTGCTGCCATGGCGCTCTCCGCGGCTGTCGTTCTC
TCACGTTTCGTTCCGTTGTTTCTTTTTTTCTACAGTTCCATTCGGCGTGC
TGAGCTGAGCAAACAACTCGCGAGCGCTGCCATGGCCCTCTCCGCGGCTG
CCATTCTCTCACGGGCCACCCGCGTCGGCGCGGCGCGGGCCTCCGGGCTG
CTGCGCTCTTCCACCGGCAACACGGCCGGCGCGGCGTGCATGGTGGGGGC
CCAGCGGGGGATGACCACGTTCGACGATAGGGAAAAGGGGGAAGAGACGG
TGTTCATGAGGCAGAAGGAGAAGGCCTTGCTGAGCAAGCTTCTCAAGAAG
ATGAAGGCTCAGGAGGACGGGGAAAAGGGGGAAGAGACGGTGTTCATGAG
GCAGAAGGAGAAGGCCTTGCTGAGCAAGCTTCTCAAGAAGATGAAGGCTC
AGGAGGACGGGGGCCGTGCCGAGCTGATGGAGATCCTTGGAGACAACAAG
CTCCCGGACGCCGTCATCGAGCGACTCCTGGACTGGAAGCACCACGAATA
AGGGCCGTGCCGAGCTGATGGAGATCCTTGGAGACAACAAGCTCCCGGAC
GCCGTCATCGAGCGACTCCTGGACTGGAAGCACCACGAATAA
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