mRNA_S-ischiensis_contig9.20743.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20743.1
Unique NamemRNA_S-ischiensis_contig9.20743.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2913611..2914583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size974
Cds size519
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.2993913-CDS-S-ischiensis_contig9:2913610..29141291622817373.2993913-CDS-S-ischiensis_contig9:2913610..2914129Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2913611..2914129 +
1695741064.2636623-CDS-S-ischiensis_contig9:2913610..29141291695741064.2636623-CDS-S-ischiensis_contig9:2913610..2914129Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2913611..2914129 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.3157883-UTR-S-ischiensis_contig9:2914129..29145831622817373.3157883-UTR-S-ischiensis_contig9:2914129..2914583Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2914130..2914583 +
1695741064.273523-UTR-S-ischiensis_contig9:2914129..29145831695741064.273523-UTR-S-ischiensis_contig9:2914129..2914583Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2914130..2914583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20743.1prot_S-ischiensis_contig9.20743.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2913611..2914129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20743.1

>prot_S-ischiensis_contig9.20743.1 ID=prot_S-ischiensis_contig9.20743.1|Name=mRNA_S-ischiensis_contig9.20743.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=173bp
RAASVLQWSKHIGDPAGNDFNSEQLEASCFEVCHTKHNLSYVPPAVPLPC
QRSRFCYTSLPLPLLLQQPRAPAAAAGATAGAARLAGPEREVGSPWIPVG
LPSGRRVVAQGLQGVSTGTTWGEVRATSLETSAVALPYLTRGKLCGEGEE
EYTCTCQLTRLLQVPARLPVGS*
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mRNA from alignment at S-ischiensis_contig9:2913611..2914583+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20743.1 ID=mRNA_S-ischiensis_contig9.20743.1|Name=mRNA_S-ischiensis_contig9.20743.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=973bp|location=Sequence derived from alignment at S-ischiensis_contig9:2913611..2914583+ (Schizocladia ischiensis KU_0333)
CGTGCTGCCAGTGTACTCCAGTGGAGTAAACACATTGGCGACCCTGCTGG
TAATGATTTTAATTCTGAGCAGCTGGAAGCCTCGTGCTTCGAAGTATGTC
ATACGAAGCACAACTTGAGCTACGTGCCGCCAGCTGTGCCCCTCCCCTGC
CAGCGCAGCCGCTTCTGCTATACAAGTCTGCCCCTCCCCCTGCTACTGCA
GCAGCCCAGGGCTCCAGCAGCTGCAGCAGGTGCTACTGCTGGAGCTGCCA
GGCTGGCCGGCCCGGAGCGAGAGGTGGGCTCGCCGTGGATACCAGTTGGC
CTGCCATCAGGGAGGCGAGTGGTTGCCCAGGGGCTTCAGGGAGTATCAAC
AGGAACAACATGGGGCGAGGTGCGGGCCACGTCACTAGAGACCTCAGCAG
TGGCCCTTCCTTACCTCACCAGGGGAAAGTTGTGTGGGGAAGGGGAGGAG
GAGTACACGTGTACCTGTCAGTTGACGCGCTTGTTGCAGGTACCTGCCAG
GCTGCCAGTGGGAAGCTGAGACTTAGCTAGGAACGTTCCTCAGCCCGGGC
ACGGTGGCCGCATGTGCTGTAGCTCTCGGGTGTGTACAGGGGCGGCAGTC
CAGCCAGAGCGGGCACGCGCAGGTGTTCCGCGCGCTTAACCCTTGTACCC
CTGGGGTCCGAATAATCATACTCGTAGGGTTTTTTGTCAGTCATTTGACC
TCAGGGGGGGGGGGGAACTATACATTTCCAATGCAAACTTAGGTGGCCGG
TATGACGAACGCGTAGCACAGAGAGTCGTTTGACCTCAggggggGGGGGG
AACGTTACATTTCCAATGCAAACTTGCGTGGCCGATATGACGAACACGTA
GCACAGAACAACAACTTTGGGGCATGTGGACATGTTGAGAGCCTCAGCTG
AGGCCAGTGGCATGTCGCTGAAACGTCTCCACAAACTGTCTGAATGCACA
ACACATGTAACGTTCAGGCCCTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2913611..2914583+

>mRNA_S-ischiensis_contig9.20743.1 ID=mRNA_S-ischiensis_contig9.20743.1|Name=mRNA_S-ischiensis_contig9.20743.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1038bp|location=Sequence derived from alignment at S-ischiensis_contig9:2913611..2914583+ (Schizocladia ischiensis KU_0333)
CGTGCTGCCAGTGTACTCCAGTGGAGTAAACACATTGGCGACCCTGCTGG
TAATGATTTTAATTCTGAGCAGCTGGAAGCCTCGTGCTTCGAAGTATGTC
ATACGAAGCACAACTTGAGCTACGTGCCGCCAGCTGTGCCCCTCCCCTGC
CAGCGCAGCCGCTTCTGCTATACAAGTCTGCCCCTCCCCCTGCTACTGCA
GCAGCCCAGGGCTCCAGCAGCTGCAGCAGGTGCTACTGCTGGAGCTGCCA
GGCTGGCCGGCCCGGAGCGAGAGGTGGGCTCGCCGTGGATACCAGTTGGC
CTGCCATCAGGGAGGCGAGTGGTTGCCCAGGGGCTTCAGGGAGTATCAAC
AGGAACAACATGGGGCGAGGTGCGGGCCACGTCACTAGAGACCTCAGCAG
TGGCCCTTCCTTACCTCACCAGGGGAAAGTTGTGTGGGGAAGGGGAGGAG
GAGTACACGTGTACCTGTCAGTTGACGCGCTTGTTGCAGGTACCTGCCAG
GCTGCCAGTGGGAAGCTGACGTGCTGCCAGTGTACTCCAGTGGAGTAAAC
ACATTGGCGACCCTGCTGGTAATGATTTTAATTCTGAGCAGCTGGAAGCC
TCGTGCTTCGAAGTATGTCATACGAAGCACAACTTGAGCTACGTGCCGCC
AGCTGTGCCCCTCCCCTGCCAGCGCAGCCGCTTCTGCTATACAAGTCTGC
CCCTCCCCCTGCTACTGCAGCAGCCCAGGGCTCCAGCAGCTGCAGCAGGT
GCTACTGCTGGAGCTGCCAGGCTGGCCGGCCCGGAGCGAGAGGTGGGCTC
GCCGTGGATACCAGTTGGCCTGCCATCAGGGAGGCGAGTGGTTGCCCAGG
GGCTTCAGGGAGTATCAACAGGAACAACATGGGGCGAGGTGCGGGCCACG
TCACTAGAGACCTCAGCAGTGGCCCTTCCTTACCTCACCAGGGGAAAGTT
GTGTGGGGAAGGGGAGGAGGAGTACACGTGTACCTGTCAGTTGACGCGCT
TGTTGCAGGTACCTGCCAGGCTGCCAGTGGGAAGCTGA
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