mRNA_S-ischiensis_contig9.20738.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20738.1
Unique NamemRNA_S-ischiensis_contig9.20738.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20738.1 vs. uniprot
Match: D8LLP9_ECTSI (Zinc binding dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP9_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 9.650e-41
Identity = 119/272 (43.75%), Postives = 145/272 (53.31%), Query Frame = 2 
Query:  317 SLSLGPDDDKAEPPLGPGQVAVKMRSAGCGPADVAALTGPSPVRPPLPH------------VGGSEGWGEVAAVGPGVSSLREGDVVVPAAGG----------FGTWRGVARVEEGRLAKVPEGTPPA-------------------VAAMASASVCAAHRILNDYAE--LKEGDTVVITGAMSAVGQALVQLAATRGLKAVCVVGSEADKEGVKSLGASEAVTLPEYKALRVKNAGLVADGEGGSVGGTAARALGFQGPLVSFGASAGKGV 1003
            S+  G  DD    P GPGQVAVK+ +A C PAD+ A+    P      H            +GG+E   E+ AVG  VSSLR GD+ VP   G           GTWR  A + E  L KVP G   A                   VAA  S SV  A RIL D+ E  L  GD VV TGA SAV Q L+QLAA+RGL++VC+V SE +      LGA +A  L E+KA+R+ NA +VADGEGG +G TAARAL F+G  VS+   +G GV
Sbjct:   36 SVEHGDGDDDCTAPPGPGQVAVKLLAAPCTPADLRAVATRPPXXXXXNHHASGSGLEFPRTIGGTEALWEITAVGGDVSSLRPGDLAVPVVAGNDPGNGARQAAGTWRTRATLTEASLVKVPIGGSGAAAAGVLEEKGGDGGGVGFEVAAHCSVSVATAIRILEDFVEKELGAGDRVVFTGASSAVAQILLQLAASRGLESVCLVNSEEEAALALKLGAWKATLLKEFKAMRMDNACIVADGEGGVLGFTAARALRFRGCFVSYADLSGGGV 307
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BLAST of mRNA_S-ischiensis_contig9.20738.1 vs. uniprot
Match: A0A5D6Y3I4_9STRA (PKS_ER domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3I4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.000e-31
Identity = 98/249 (39.36%), Postives = 137/249 (55.02%), Query Frame = 2 
Query:  275 LSTVRITSYAPASESLSLGPDDDKAEPPLGPGQVAVKMRSAGCGPADVAALTGPSPVRPPLPHVGGSEGWGEVAAVGPGVSSLREGDVVVPAAGGFGTWRGVARVEEGRLAKVPEGTPPAVAAMASASVCAAHRILNDYAELKEGDTVVITGAMSAVGQALVQLAATRGLKAVCVVGSEAD----KEGVKSLGASEAVTLPEYKALRVKNAGLVADGEG-----GSVGGTA----ARALGFQGPLVSFG 982
            +STVR   Y      L++ PDD +  P  G GQVA+K  +A    AD++ + G   VRP LP V G+EG   V AVGP V++++  D V+P   GFGTWR  A      + K+ +      AA  + +   A+R+L D+AEL+ GD V+  GA SAVGQA++QLAA RG+K + VV  + D     E +KSLGA+  VT     + + K   L++D          VGG +    ARALG  G  V++G
Sbjct:    1 MSTVRYAEYGHPLNVLTVEPDDKEEAP--GRGQVALKFLAAPINVADLSQIHGHYAVRPKLPAVAGNEGVAVVTAVGPDVTNVKVNDRVIPTQAGFGTWRSKALAPSADVLKISDKIAIEDAATLAVNPATAYRLLADFAELQAGDVVIQNGANSAVGQAVIQLAALRGIKTINVVREDGDYDLTNEHLKSLGATVVVTYEYLGSAKFKE--LISDLPAPKLALNCVGGRSSLELARALGKNGVHVTYG 245
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BLAST of mRNA_S-ischiensis_contig9.20738.1 vs. uniprot
Match: A0A3P9AEW5_ESOLU (Enoyl-[acyl-carrier-protein] reductase, mitochondrial-like n=1 Tax=Esox lucius TaxID=8010 RepID=A0A3P9AEW5_ESOLU)

HSP 1 Score: 128 bits (321), Expect = 1.900e-29
Identity = 89/224 (39.73%), Postives = 122/224 (54.46%), Query Frame = 2 
Query:  359 LGPGQVAVKMRSAGCGPADVAALTGPSPVRPPLPHVGGSEGWGEVAAVGPGVSSLREGDVVVPAAGGFGTWRGVARVEEGRLAKVPEGTPPAVAAMASASVCAAHRILNDYAELKEGDTVVITGAMSAVGQALVQLAATRGLKAVCVVGSEADK----EGVKSLGASEAVTLPEYKALRVKNA-------GLVADGEGGSVGGTAARALGFQGPLVSFGASAGK 997
            LG   V ++M +A   PAD+  L G  P+ P LP VGG+EG GEV  VG  V+SLR GD  +P   GFGTWR  A  E G L ++P   P   AA    + C A+R+L+D+  L  G TV+  GA SAVGQA++Q+AA  G+K + V+     +    E +KS+GA   +T  E + L ++N         L  +  GG  GG    +L   G LV++G  A K
Sbjct:   61 LGQHSVRLRMLAAPVNPADINMLQGTYPILPRLPAVGGNEGLGEVIEVGTAVTSLRPGDWAIPWDAGFGTWRTEAVCEAGDLLRIPRDMPLLGAATIGVNPCTAYRMLHDFVTLTPGATVIQNGANSAVGQAVIQIAAALGVKTINVIRDRPYRRELEEELKSMGADLVITEEELQGLSLENVIQGLQKPVLGLNCVGGQSGGLVLSSLCEGGTLVTYGGMAKK 284
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BLAST of mRNA_S-ischiensis_contig9.20738.1 vs. uniprot
Match: C3Y6V3_BRAFL (PKS_ER domain-containing protein (Fragment) n=8 Tax=Branchiostoma TaxID=7737 RepID=C3Y6V3_BRAFL)

HSP 1 Score: 126 bits (317), Expect = 2.780e-29
Identity = 74/170 (43.53%), Postives = 103/170 (60.59%), Query Frame = 2 
Query:  371 QVAVKMRSAGCGPADVAALTGPSPVRPPLPHVGGSEGWGEVAAVGPGVSSLREGDVVVPAAGGFGTWRGVARVEEGRLAKVPEGTPPAVAAMASASVCAAHRILNDYAELKEGDTVVITGAMSAVGQALVQLAATRGLKAVCVVGSEADKEG-------VKSLGASEAVT 859
            QV+V+M +A   PAD+  + G  P++PPLP VGG+EG GEV +VG  VS L+ GD V+PA  G+GTWR  A      L K+P   P   AA  + + C A+R+L+D+  L+ GDT+V  GA S VGQA++Q+AA RGL  + VV +  D+         +K LG    +T
Sbjct:   13 QVSVRMLAAPINPADINMIQGVYPIKPPLPAVGGNEGVGEVVSVGLQVSDLQPGDWVIPADSGWGTWRTHAVCPASELRKIPNDIPLEAAATLAVNPCTAYRMLSDFQHLQPGDTIVQNGANSGVGQAVIQIAAARGLVTINVVRNRPDRSSYFELEMYLKGLGGHYVIT 182
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BLAST of mRNA_S-ischiensis_contig9.20738.1 vs. uniprot
Match: A0A1W0A0V0_9STRA (Trans-2-enoyl-CoA reductase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0V0_9STRA)

HSP 1 Score: 127 bits (319), Expect = 2.800e-29
Identity = 89/228 (39.04%), Postives = 128/228 (56.14%), Query Frame = 2 
Query:  359 LGPGQVAVKMRSAGCGPADVAALTGPSPVRPPLPHVGGSEGWGEVAAVGPGVSSLREGDVVVPAAGGFGTWRGVARVEEGRLAKVPEGTPPAVAAMASASVCAAHRILNDYAELKEGDTVVITGAMSAVGQALVQLAATRGLKAVCVVGSE---ADK-EGVKSLGASEAVTLPEYKALRVKNAGLVADGE---------GGSVGGTAARALGFQGPLVSFGASAGKGV 1003
            LG  +VAVK  +A   PAD++ +TG   ++  LP +GG+EG  +V A+G  VSSL+ GD V+PA  GFGTWR  A  +E  L  VP   P   AA  + + C A+R+L D+A+L + D V+  GA SAVGQA++QLAA RG+K + ++  +   AD  E +K LGA+  +  P++         L+AD           GG  G    + LG  G  V++G  A + V
Sbjct:   48 LGQHEVAVKFLAAPVNPADLSMVTGGYGIKAALPAIGGNEGVAQVTAIGQAVSSLKVGDRVIPAVAGFGTWRTEAVAKEDELLAVPSSIPVEYAATLAVNPCTAYRLLADFAKLGKDDVVIQNGANSAVGQAVIQLAALRGIKTINIIREDQHYADTVENLKGLGAT--IVCPDHYLGTADFKRLIADLPAPKVAFNCVGGDNGLQITKVLGKNGVAVTYGGMAREPV 273
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BLAST of mRNA_S-ischiensis_contig9.20738.1 vs. uniprot
Match: UPI001B7DE0B4 (enoyl-[acyl-carrier-protein] reductase, mitochondrial isoform X2 n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7DE0B4)

HSP 1 Score: 127 bits (319), Expect = 3.880e-29
Identity = 87/214 (40.65%), Postives = 114/214 (53.27%), Query Frame = 2 
Query:  338 DDKAEPPLGPGQVAVKMRSAGCGPADVAALTGPSPVRPPLPHVGGSEGWGEVAAVGPGVSSLREGDVVVPAAGGFGTWRGVARVEEGRLAKVPEGTPPAVAAMASASVCAAHRILNDYAELKEGDTVVITGAMSAVGQALVQLAATRGLKAVCVVGSEAD----KEGVKSLGASEAVTLPEYKALRVKNAGLVADGEGGSVGGTAARALGFQGP 967
            D  A P LG   V VKM +A   P+D+  + G   + P LP VGG+EG G+V  VG  V+SLR GD V+P   G GTWR  A + E  L  VP   P   AA  S + C A R+L+D+  L+ GD V+   A S VGQA+VQ+AATRG+  + +V    D     E +KSLGA   +T    +   +K    VA   G ++G T   A    GP
Sbjct:   97 DRLALPELGVSDVHVKMLAAPVNPSDINMVQGTYAILPELPAVGGNEGVGQVLEVGSQVTSLRAGDWVIPQDAGLGTWRTEAVLNETTLTAVPNDIPLLCAASLSVNPCTAFRMLSDFESLQPGDCVIQNAANSGVGQAVVQIAATRGIHTINIVRDRPDLHQLTERLKSLGADHVITEDTLRKPEMKELFKVAQWRGAALGRTEKSASAQTGP 310
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BLAST of mRNA_S-ischiensis_contig9.20738.1 vs. uniprot
Match: A0A6P8GKF1_CLUHA (enoyl-[acyl-carrier-protein] reductase, mitochondrial n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8GKF1_CLUHA)

HSP 1 Score: 127 bits (318), Expect = 4.310e-29
Identity = 90/240 (37.50%), Postives = 126/240 (52.50%), Query Frame = 2 
Query:  329 GPDDDKAE------PPLGPGQVAVKMRSAGCGPADVAALTGPSPVRPPLPHVGGSEGWGEVAAVGPGVSSLREGDVVVPAAGGFGTWRGVARVEEGRLAKVPEGTPPAVAAMASASVCAAHRILNDYAELKEGDTVVITGAMSAVGQALVQLAATRGLKAVCVVGSEADKEGV----KSLGASEAVTLPEYKAL-------RVKNAGLVADGEGGSVGGTAARALGFQGPLVSFGASAGK 997
            GPD D+        P +G   V +++ +A   PAD+  + G  P+ P  P VGG+EG GEV  VG GVSS+R GD V+P   GFGTWR  A  +   L  VP       A+  S + C A+R+L+D+  L+ GDTV+  GA SAVGQA++Q+AA  GL+ + +V    + EG+    K+ GA   +T  E +          V    L  +  GG  GG    +L   G LV++G  A K
Sbjct:   36 GPDLDQLRMEQWDLPAVGAHSVRLQILAAPVNPADINMMQGTYPILPEFPAVGGNEGMGEVVEVGAGVSSVRVGDWVIPVDAGFGTWRTEAVCDAADLLSVPRDVSLLGASTVSVNPCTAYRMLHDFQHLRPGDTVIQNGANSAVGQAVIQIAAALGLRTINIVRDRPNYEGLAAELKARGADHVMTEDELQRTGLGHILQEVPRPRLGLNCVGGVSGGLVLTSLDSGGTLVTYGGMAKK 275
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BLAST of mRNA_S-ischiensis_contig9.20738.1 vs. uniprot
Match: A0A067BL16_SAPPC (PKS_ER domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BL16_SAPPC)

HSP 1 Score: 126 bits (317), Expect = 4.570e-29
Identity = 74/170 (43.53%), Postives = 107/170 (62.94%), Query Frame = 2 
Query:  359 LGPGQVAVKMRSAGCGPADVAALTGPSPVRPPLPHVGGSEGWGEVAAVGPGVSSLREGDVVVPAAGGFGTWRGVARVEEGRLAKVPEGTPPAVAAMASASVCAAHRILNDYAELKEGDTVVITGAMSAVGQALVQLAATRGLKAVCVVGSEADK----EGVKSLGASEAV 856
            LG  +VA+K  +A   PAD++ +TG   ++  LP +GG+EG   V AVG  VS+L+ GD V+PA  GFGTWR  A  +E  +  VPE  P   AA  + + C A+R+L D+A+L +GD ++  GA SAVGQA++QLAA RG++ + V+  + D     E +K LGA+  V
Sbjct:   40 LGQHEVALKFLAAPVNPADLSMVTGGYGIKAALPAIGGNEGVARVTAVGQAVSTLKVGDRVIPAVAGFGTWRTEAVAKEAEVLVVPESIPVEYAATLAVNPCTAYRLLADFAKLTKGDVIIQNGANSAVGQAVIQLAALRGIQTINVIREDTDYAETVEHLKGLGATVVV 209
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BLAST of mRNA_S-ischiensis_contig9.20738.1 vs. uniprot
Match: A0A2D4C726_PYTIN (Trans-2-enoyl-CoA reductase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C726_PYTIN)

HSP 1 Score: 126 bits (316), Expect = 7.190e-29
Identity = 86/218 (39.45%), Postives = 120/218 (55.05%), Query Frame = 2 
Query:  269 RGLSTVRITSYAPASESLSLGPDDDKAEPPLGPGQVAVKMRSAGCGPADVAALTGPSPVRPPLPHVGGSEGWGEVAAVGPGVSSLREGDVVVPAAGGFGTWRGVARVEEGRLAKVPEGTPPAVAAMASASVCAAHRILNDYAELKEGDTVVITGAMSAVGQALVQLAATRGLKAVCVVGSEAD----KEGVKSLGASEAVTLPEYKALRVKNAGLVAD 910
            R ++TVR   Y      L +  DD   E PL   QVA+KM +A    AD++ + G   +RP  P V G+EG   V AVG  V +++  D V+P   GFGTWR  A  +   + K+ +      AA  + +   A+R+L D+AELK GD V+  GA SAVGQA++QLAA RG+K + VV ++ D     E +KSLGA+   T     + R K   L+AD
Sbjct:   19 RSMATVRYAEYGHPLNVLKVEGDDK--EGPLAANQVALKMLAAPINVADLSQIQGAYAIRPKFPAVAGNEGVAVVTAVGADVKNVKVNDRVIPTQAGFGTWRSKAVADSQDVMKISDKIKIEDAATLAVNPATAYRLLADFAELKAGDVVIQNGANSAVGQAVIQLAALRGIKTINVVRNDGDYDVTNEHLKSLGATVVCTADYLGSARFKE--LIAD 232
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BLAST of mRNA_S-ischiensis_contig9.20738.1 vs. uniprot
Match: UPI00074FB839 (trans-2-enoyl-CoA reductase, mitochondrial n=1 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FB839)

HSP 1 Score: 126 bits (316), Expect = 7.190e-29
Identity = 86/225 (38.22%), Postives = 123/225 (54.67%), Query Frame = 2 
Query:  341 DKAEPPLGPGQVAVKMRSAGCGPADVAALTGPSPVRPPLPHVGGSEGWGEVAAVGPGVSSLREGDVVVPAAGGFGTWRGVARVEEGRLAKVPEGTPPAVAAMASASVCAAHRILNDYAELKEGDTVVITGAMSAVGQALVQLAATRGLKAVCVVGSEADKEGV----KSLGAS-----EAVTLPEYKAL--RVKNAGLVADGEGGSVGGTAARALGFQGPLVSFG 982
            D + P LG   V V+M +A   P+D+  + G   V P  P VGG+EG G+V  +G  V+SL+ GD+V+PA  G GTWR  A  EE +L K+P   P   AA    + C A R+L+D+  LK GD V+   A S  GQA++Q+AA +G+K + VV    + + +    KSLGA      EA+  PE K L  ++    L  D  GG       R L ++G +V++G
Sbjct:   39 DVSLPELGASGVHVRMLAAPINPSDINMIQGSYAVVPDFPAVGGNEGVGQVVQIGSNVTSLKPGDLVIPADAGLGTWRTEAVFEEEKLLKMPPDIPLLSAATLGVNPCTAFRMLSDFVTLKPGDAVIQNAANSGAGQAVIQIAAAKGIKTINVVRDRPNLQELVDRLKSLGADHVITEEALRKPETKDLLQKIPKPLLALDAVGGKSATEMLRHLQYKGTMVTYG 263
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLP9_ECTSI9.650e-4143.75Zinc binding dehydrogenase n=1 Tax=Ectocarpus sili... [more]
A0A5D6Y3I4_9STRA2.000e-3139.36PKS_ER domain-containing protein n=1 Tax=Pythium b... [more]
A0A3P9AEW5_ESOLU1.900e-2939.73Enoyl-[acyl-carrier-protein] reductase, mitochondr... [more]
C3Y6V3_BRAFL2.780e-2943.53PKS_ER domain-containing protein (Fragment) n=8 Ta... [more]
A0A1W0A0V0_9STRA2.800e-2939.04Trans-2-enoyl-CoA reductase n=1 Tax=Thraustotheca ... [more]
UPI001B7DE0B43.880e-2940.65enoyl-[acyl-carrier-protein] reductase, mitochondr... [more]
A0A6P8GKF1_CLUHA4.310e-2937.50enoyl-[acyl-carrier-protein] reductase, mitochondr... [more]
A0A067BL16_SAPPC4.570e-2943.53PKS_ER domain-containing protein n=3 Tax=Saprolegn... [more]
A0A2D4C726_PYTIN7.190e-2939.45Trans-2-enoyl-CoA reductase, putative n=1 Tax=Pyth... [more]
UPI00074FB8397.190e-2938.22trans-2-enoyl-CoA reductase, mitochondrial n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2879205..2883503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue1.1e-36
Seed eggNOG ortholog2880.D8LLP9
EggNOG free text desc.fatty acid biosynthetic process
EggNOG OGsCOG0604@1,KOG0025@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-04_004930.1
Exons5
Model size1366
Cds size1155
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20738.1prot_S-ischiensis_contig9.20738.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2879416..2883503 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817398.385661-UTR-S-ischiensis_contig9:2879204..28794151622817398.385661-UTR-S-ischiensis_contig9:2879204..2879415Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2879205..2879415 +
1695741084.482704-UTR-S-ischiensis_contig9:2879204..28794151695741084.482704-UTR-S-ischiensis_contig9:2879204..2879415Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2879205..2879415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817398.3991015-CDS-S-ischiensis_contig9:2879415..28795281622817398.3991015-CDS-S-ischiensis_contig9:2879415..2879528Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2879416..2879528 +
1695741084.4968581-CDS-S-ischiensis_contig9:2879415..28795281695741084.4968581-CDS-S-ischiensis_contig9:2879415..2879528Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2879416..2879528 +
1622817398.4141455-CDS-S-ischiensis_contig9:2880182..28804681622817398.4141455-CDS-S-ischiensis_contig9:2880182..2880468Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2880183..2880468 +
1695741084.5073574-CDS-S-ischiensis_contig9:2880182..28804681695741084.5073574-CDS-S-ischiensis_contig9:2880182..2880468Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2880183..2880468 +
1622817398.4259162-CDS-S-ischiensis_contig9:2881111..28812521622817398.4259162-CDS-S-ischiensis_contig9:2881111..2881252Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2881112..2881252 +
1695741084.528515-CDS-S-ischiensis_contig9:2881111..28812521695741084.528515-CDS-S-ischiensis_contig9:2881111..2881252Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2881112..2881252 +
1622817398.437467-CDS-S-ischiensis_contig9:2882474..28825911622817398.437467-CDS-S-ischiensis_contig9:2882474..2882591Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2882475..2882591 +
1695741084.5392876-CDS-S-ischiensis_contig9:2882474..28825911695741084.5392876-CDS-S-ischiensis_contig9:2882474..2882591Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2882475..2882591 +
1622817398.4483302-CDS-S-ischiensis_contig9:2883005..28835031622817398.4483302-CDS-S-ischiensis_contig9:2883005..2883503Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2883006..2883503 +
1695741084.548785-CDS-S-ischiensis_contig9:2883005..28835031695741084.548785-CDS-S-ischiensis_contig9:2883005..2883503Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2883006..2883503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20738.1

>prot_S-ischiensis_contig9.20738.1 ID=prot_S-ischiensis_contig9.20738.1|Name=mRNA_S-ischiensis_contig9.20738.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=385bp
MFGRLATAYLRRPPTARLSRGLSTVRITSYAPASESLSLGPDDDKAEPPL
GPGQVAVKMRSAGCGPADVAALTGPSPVRPPLPHVGGSEGWGEVAAVGPG
VSSLREGDVVVPAAGGFGTWRGVARVEEGRLAKVPEGTPPAVAAMASASV
CAAHRILNDYAELKEGDTVVITGAMSAVGQALVQLAATRGLKAVCVVGSE
ADKEGVKSLGASEAVTLPEYKALRVKNAGLVADGEGGSVGGTAARALGFQ
GPLVSFGASAGKGVRCICVRSALNVLFTFNLLRARRVRGTAQVRALPTLP
TFARRVCKAFQPSNVCNMATSQLPFEALHTHTVAWGTSKHCSTVAKVYLG
SAYSRIARLTRQGCAPWKSRCWSAVYPPPQCSVP*
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mRNA from alignment at S-ischiensis_contig9:2879205..2883503+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20738.1 ID=mRNA_S-ischiensis_contig9.20738.1|Name=mRNA_S-ischiensis_contig9.20738.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4299bp|location=Sequence derived from alignment at S-ischiensis_contig9:2879205..2883503+ (Schizocladia ischiensis KU_0333)
TGCCTCTCCGTAGGTGAAGCGCACTCGTTTGACCTTGCTTGACCCTACCA
AAGCGCCGTGGCGCTTTGGTTGGAGGGACACGCCCACGAGGGCGGGGAGT
TGTGCGGTGGCCTCGAATATTTCGACGCTTGGCGCTCTTTCGCGCTGCTA
GACTCTATAGCCTGGATACGGGCTGGTTCAGGTCTCAGAACTCCCCAGTT
TGCGGGCCAAGATGTTTGGGAGGCTTGCGACCGCATATTTGCGGAGACCA
CCAACCGCAAGGCTCTCCCGGGGGCTCAGCACCGTACGAATCACGAGCTA
TGCTCCAGCTTCGGAGTCTCTGAGGTCAGCCCGCACCGACGCCAAGCGGA
CACGCTCCTCTGTAGCCGGCCCCCATCTGAGCCGCCTTGAGCAGCAGCGG
GTTGTGCGTGGGGCGCAAAACGTCTGGTTCACATCATGAGTTCTCGCTCG
TGTCTAGTGCTGCCTCCTTGCCGCCCTCACCCCCTTCTTCAACCAAGAGC
GGACTGCATTGTGAACCCTTCAACGTTGCGCCCTCGATGAAAGAAAAAGG
GGCTCACCTGCCGTTACTCTGTAGCCGTCTCCAAGACGAGACGAGACCGT
GCTCCCTGACATAGACCCTTCCTCAGAGTCTCTCATAGTGGTAGGGATGG
TCAATGATGAGTCATACGGCAAGGGCAACAAGTGAAGTACTCATGAACCC
CCCCACCCCGTTTGCCCGCCCCCTTCCCCCTGCACACACATACATGCATA
CATACACACGCATAAACACGCGCGCAAGTACACAACACACACAAACACAC
ACACACACACACACACACACCACACGCACGCAGGCACACAAACACAGACA
TACTTCGAAGTACATACACACACGCACGAAGACGCATGCACACGCGCACA
CACACACACACACACACGTACAGCCCGACCTCGACCCCCACGCACACGCC
CCTCGCTGTCGTCCCGCCCCCATGGCAGCCTGGGCCCGGACGACGACAAG
GCTGAGCCCCCCCTGGGGCCCGGGCAGGTGGCGGTCAAGATGCGCAGCGC
TGGCTGCGGCCCCGCAGACGTGGCCGCCCTCACCGGACCCTCCCCCGTGC
GGCCGCCGCTACCCCACGTGGGGGGGTCGGAGGGGTGGGGCGAGGTGGCC
GCGGTGGGCCCGGGCGTGTCCTCGCTGAGGGAGGGGGACGTGGTGGTCCC
GGCCGCCGGGGGTTTCGGGACCTGGCGGGGCGTTGCCCGGGTGGAGGAGG
GGCGGCTGGCCAAGGTGCGGTGGGGTGTGGGTATCTTGTCCTCTGGGCGA
TGATCAGATTGGTTGAAATTGGGAGATTTCGAAGCGGTAGGAGCTCGAGC
ACTTCGAGGTATACTGTACAGTATTATTTTTTCCGTGTACTCGTTCTCTA
CTTCCGGAATACAGTACAGTTCCCGCCAGGCAAAGGCGAGGCGTACACTA
GAAGGACAGACAGCACGTACACTACTGTAGTGCAGTTTTTTGTTTCTTCT
GTTTTGCATGGCGAGGTACGTAGGTCCTCCTGTGCTACAGCTGTTGTCGT
GCCGGAGGAACAGGGCACGGCCAGTTTACAGTTGCTGCTGCTGCTGCTGC
TTCTGCTGCACAGAGGAGCTCTCTTGAGGGCGCACTGCAGCAAGCAGCAA
TATGTCGCGCTTCAAGTGTGCACACGTGGAAAGCAGTGCTGTGGTTGGTG
TTCCTGCGGCACGACCACTCAGTCGGTCCGGTAACTTACCCCGGCGCGTT
CTTTCTCTTTATTATTTTTTTTTCGTATTGAAGCTTTTTTTTGTTTGATA
TGAGGCGTGTACAGTACTACTGTGCTGTGGTGAGGCATCACATCACATCA
GATCACGTCGCGTCGCACCGCACCGCATCCCATGAAACGTCCCCAAACGT
CCCCCAGGTGCCGGAGGGGACCCCGCCGGCGGTGGCCGCCATGGCCTCGG
CCAGCGTTTGCGCGGCCCACCGAATCCTGAATGACTACGCCGAGCTCAAG
GAAGGCGACACGGTGGTGATCACGGGGGCCATGTCCGCCGTGGGACAGGT
GAGAAAAGGGCGGAGAGATGTTCTGTGCGAGTACTCGAGTAGCTCTAGGC
ACGGAAGCGCTCGATTAGTGTAGGACTTGTTTTAGTGGTGATTCGAATGA
ATTGTAACTAAAATTGTAGCGAGGTACAATCGCACATTTGTGAGATTGAG
TGTTCTCGTATAAGTGGTTATCCCATTTAAGGTGTCGGTGGTGTTGGTGG
TACTGTCAGTGGATTCTTGTACTCTTGTGTTGGTTGTTGTCGTGTACAGT
ACAGAAGGTGCGGATCGGCGGAGAGATGGTGTGCCGCAGGCAGGGGGAAG
CAGTCAGCTGACGAGGGTTGCCATCGTTGTTGTTGGTGTTTGTTGTACGT
GCGGAAAGGCGGAGAGATTGTGCTGTGGGCACGGGGAAGTGGTCGGCTGA
GGGGAGGGTTCTCGTCGTCGTCGTCGTCGTTGTCGTCGTCGTCGTCGTCG
TCGTCGTCGATTTTGTTTATTGTGTATGCGGAAAGGAGGAGAGATTGTGC
TGTGGGCACGGGGAAGCGGTCGGCTGAGGAGGGTTGTCGCTGTCGTCGTT
GTCGTCGTCTTGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTC
GTTGCTGTTGTTGTTGTTGCTGCTGCTGCTGGTGTTGTTGTTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGTTGCTGTTGTTGCTGCTGCTGTTGTTGTTG
TTGTTGCTGTTGTTGTTTTTGTTTGTTGTCGCTGTTGCTGCTGTTGTCAT
TGTGCGAGTGTGGACGTTTTACTGCACGGCAGGGAAGAGATTCCGAGGCT
CACGTCCCGTGTTGAGCCCCAGCTTTCTTTTCTGACCCCGAAAGGAAGTT
CGCACACCTGCTGTACTGTACAGTACCTGTACAGACTGTACTGTACAGTA
CCTGACAGACTGTACCGTGCAGCACCTGTACAGACCGTACTGTACAGTAC
CTGACAGACTGTACTGTACAGCATCTGTACAGTAGCTCACTGCGAGTACA
AGCACCGGCTACTAGAACCCACCATGCCATTGGCAACAGTGGGCTTCGGC
CTGATGCTCTCTTTCTCTGTTCTCTCTCTGTCCCTGCTTCACGCTTCCTC
CCCGTCTCTCCTCGCCCTCTCCCTCTTCCCCTCTCTCCACCCCCCTCCCT
CTGCCTCTCCTCCTTCTCCTCCCCCCCCCCTCCCCTGTCTGTCTCATGAC
CGCATATGCCCCCCGTGCAGGCTTTGGTGCAGCTGGCTGCCACCCGTGGG
CTGAAGGCGGTGTGCGTGGTCGGTTCGGAGGCGGACAAGGAGGGGGTCAA
GAGCCTCGGGGCATCAGAGGCCGTCACGCTGCCGGAGGTGTGTACTCACG
GCATGTATAAGTACCTAGCAGGGATGCGGGGGTTGATGGCCAAAGTGCTA
TGACCGTGCACACGCGTGCGCGGAGGAGACGATGCACGTAAATCATGAGC
ACATTTATATACTTCGGGAAGTAGTACTCGAGTATATGTATGTCCAAGCA
CACCCCACACAACCATTCCCTGGCGAGCTACGATAAGGCAGGACCACTAT
TGAGGCCTTTTAAACTACTGATGCACTTCGGAGTAAGTAGTGACGTGGCC
TGCACCTCGCCCCGTGTTCTCCTGTCAGTACAATAGGCACCATGACTCTA
CAACAGATATACTTGGAGAGATGGAGAGATGGATCTCGCCCTTACCATAT
CTCTTGCCTCCCCCGCCCCTGTCCCTCCCCACCGGCCGCAACCCTGCCCA
GTACAAGGCCCTGCGGGTGAAGAATGCCGGCTTGGTGGCGGACGGGGAGG
GCGGGTCGGTGGGGGGCACGGCCGCGAGGGCGCTGGGCTTCCAGGGCCCC
TTGGTTTCCTTCGGGGCCTCGGCGGGCAAAGGCGTCAGGTGCATCTGTGT
CAGAAGCGCTTTAAACGTTTTGTTTACATTCAATTTGCTGCGAGCGCGGC
GCGTGCGCGGCACAGCTCAGGTCAGGGCATTGCCTACACTCCCTACTTTC
GCTCGTCGCGTTTGCAAGGCGTTCCAGCCCAGCAATGTTTGCAACATGGC
TACCTCCCAACTACCTTTTGAAGCGCTCCACACGCACACAGTTGCTTGGG
GTACTTCGAAGCACTGCAGCACAGTAGCTAAGGTATACTTGGGGAGTGCT
TATTCGCGCATTGCGCGGCTGACAAGGCAAGGTTGCGCCCCATGGAAGTC
TCGCTGCTGGTCTGCAGTCTACCCCCCTCCACAGTGCTCCGTCCCGTAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2879205..2883503+

>mRNA_S-ischiensis_contig9.20738.1 ID=mRNA_S-ischiensis_contig9.20738.1|Name=mRNA_S-ischiensis_contig9.20738.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2310bp|location=Sequence derived from alignment at S-ischiensis_contig9:2879205..2883503+ (Schizocladia ischiensis KU_0333)
ATGTTTGGGAGGCTTGCGACCGCATATTTGCGGAGACCACCAACCGCAAG
GCTCTCCCGGGGGCTCAGCACCGTACGAATCACGAGCTATGCTCCAGCTT
CGGAGTCTCTGAGATGTTTGGGAGGCTTGCGACCGCATATTTGCGGAGAC
CACCAACCGCAAGGCTCTCCCGGGGGCTCAGCACCGTACGAATCACGAGC
TATGCTCCAGCTTCGGAGTCTCTGAGCCTGGGCCCGGACGACGACAAGGC
TGAGCCCCCCCTGGGGCCCGGGCAGGTGGCGGTCAAGATGCGCAGCGCTG
GCTGCGGCCCCGCAGACGTGGCCGCCCTCACCGGACCCTCCCCCGTGCGG
CCGCCGCTACCCCACGTGGGGGGGTCGGAGGGGTGGGGCGAGGTGGCCGC
GGTGGGCCCGGGCGTGTCCTCGCTGAGGGAGGGGGACGTGGTGGTCCCGG
CCGCCGGGGGTTTCGGGACCTGGCGGGGCGTTGCCCGGGTGGAGGAGGGG
CGGCTGGCCAAGCCTGGGCCCGGACGACGACAAGGCTGAGCCCCCCCTGG
GGCCCGGGCAGGTGGCGGTCAAGATGCGCAGCGCTGGCTGCGGCCCCGCA
GACGTGGCCGCCCTCACCGGACCCTCCCCCGTGCGGCCGCCGCTACCCCA
CGTGGGGGGGTCGGAGGGGTGGGGCGAGGTGGCCGCGGTGGGCCCGGGCG
TGTCCTCGCTGAGGGAGGGGGACGTGGTGGTCCCGGCCGCCGGGGGTTTC
GGGACCTGGCGGGGCGTTGCCCGGGTGGAGGAGGGGCGGCTGGCCAAGGT
GCCGGAGGGGACCCCGCCGGCGGTGGCCGCCATGGCCTCGGCCAGCGTTT
GCGCGGCCCACCGAATCCTGAATGACTACGCCGAGCTCAAGGAAGGCGAC
ACGGTGGTGATCACGGGGGCCATGTCCGCCGTGGGACAGGTGCCGGAGGG
GACCCCGCCGGCGGTGGCCGCCATGGCCTCGGCCAGCGTTTGCGCGGCCC
ACCGAATCCTGAATGACTACGCCGAGCTCAAGGAAGGCGACACGGTGGTG
ATCACGGGGGCCATGTCCGCCGTGGGACAGGCTTTGGTGCAGCTGGCTGC
CACCCGTGGGCTGAAGGCGGTGTGCGTGGTCGGTTCGGAGGCGGACAAGG
AGGGGGTCAAGAGCCTCGGGGCATCAGAGGCCGTCACGCTGCCGGAGGCT
TTGGTGCAGCTGGCTGCCACCCGTGGGCTGAAGGCGGTGTGCGTGGTCGG
TTCGGAGGCGGACAAGGAGGGGGTCAAGAGCCTCGGGGCATCAGAGGCCG
TCACGCTGCCGGAGTACAAGGCCCTGCGGGTGAAGAATGCCGGCTTGGTG
GCGGACGGGGAGGGCGGGTCGGTGGGGGGCACGGCCGCGAGGGCGCTGGG
CTTCCAGGGCCCCTTGGTTTCCTTCGGGGCCTCGGCGGGCAAAGGCGTCA
GGTGCATCTGTGTCAGAAGCGCTTTAAACGTTTTGTTTACATTCAATTTG
CTGCGAGCGCGGCGCGTGCGCGGCACAGCTCAGGTCAGGGCATTGCCTAC
ACTCCCTACTTTCGCTCGTCGCGTTTGCAAGGCGTTCCAGCCCAGCAATG
TTTGCAACATGGCTACCTCCCAACTACCTTTTGAAGCGCTCCACACGCAC
ACAGTTGCTTGGGGTACTTCGAAGCACTGCAGCACAGTAGCTAAGGTATA
CTTGGGGAGTGCTTATTCGCGCATTGCGCGGCTGACAAGGCAAGGTTGCG
CCCCATGGAAGTCTCGCTGCTGGTCTGCAGTCTACCCCCCTCCACAGTGC
TCCGTCCCGTAGTACAAGGCCCTGCGGGTGAAGAATGCCGGCTTGGTGGC
GGACGGGGAGGGCGGGTCGGTGGGGGGCACGGCCGCGAGGGCGCTGGGCT
TCCAGGGCCCCTTGGTTTCCTTCGGGGCCTCGGCGGGCAAAGGCGTCAGG
TGCATCTGTGTCAGAAGCGCTTTAAACGTTTTGTTTACATTCAATTTGCT
GCGAGCGCGGCGCGTGCGCGGCACAGCTCAGGTCAGGGCATTGCCTACAC
TCCCTACTTTCGCTCGTCGCGTTTGCAAGGCGTTCCAGCCCAGCAATGTT
TGCAACATGGCTACCTCCCAACTACCTTTTGAAGCGCTCCACACGCACAC
AGTTGCTTGGGGTACTTCGAAGCACTGCAGCACAGTAGCTAAGGTATACT
TGGGGAGTGCTTATTCGCGCATTGCGCGGCTGACAAGGCAAGGTTGCGCC
CCATGGAAGTCTCGCTGCTGGTCTGCAGTCTACCCCCCTCCACAGTGCTC
CGTCCCGTAG
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