mRNA_S-ischiensis_contig9.20736.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20736.1
Unique NamemRNA_S-ischiensis_contig9.20736.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20736.1 vs. uniprot
Match: A0A6H5KRP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRP3_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 9.670e-7
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:   46 GDAYLQVSGSKAERHSLHNASSNTLWVIERTFAALGGRPLRAHVRRAA 189
            G  +L +S +   R  L NASSN LWV+ERT  ALGGRPLR     AA
Sbjct:  312 GGPFLYISATPHRRQKLQNASSNCLWVLERTHCALGGRPLRGSCASAA 359
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BLAST of mRNA_S-ischiensis_contig9.20736.1 vs. uniprot
Match: D7FMW8_ECTSI (Inositol triphosphate receptor (IP3R)/ Ryanodine receptor like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW8_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 2.560e-6
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:   46 GDAYLQVSGSKAERHSLHNASSNTLWVIERTFAALGGRPLRAHVRRAA 189
            G  +L +S +   R  L NASSN LWV+ERT  ALGGRPLR     AA
Sbjct:  389 GGPFLYISATPHRRLKLQNASSNCLWVLERTHCALGGRPLRGSCASAA 436
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRP3_9PHAE9.670e-754.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMW8_ECTSI2.560e-654.17Inositol triphosphate receptor (IP3R)/ Ryanodine r... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2871144..2871743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size229
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817398.2628572-CDS-S-ischiensis_contig9:2871143..28712851622817398.2628572-CDS-S-ischiensis_contig9:2871143..2871285Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2871144..2871285 -
1695741084.3925548-CDS-S-ischiensis_contig9:2871143..28712851695741084.3925548-CDS-S-ischiensis_contig9:2871143..2871285Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2871144..2871285 -
1622817398.2752948-CDS-S-ischiensis_contig9:2871657..28717431622817398.2752948-CDS-S-ischiensis_contig9:2871657..2871743Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2871658..2871743 -
1695741084.4039721-CDS-S-ischiensis_contig9:2871657..28717431695741084.4039721-CDS-S-ischiensis_contig9:2871657..2871743Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2871658..2871743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20736.1prot_S-ischiensis_contig9.20736.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2871144..2871743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20736.1

>prot_S-ischiensis_contig9.20736.1 ID=prot_S-ischiensis_contig9.20736.1|Name=mRNA_S-ischiensis_contig9.20736.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=76bp
SSRSRDRPGGSRSRWGDAYLQVSGSKAERHSLHNASSNTLWVIERTFAAL
GGRPLRAHVRRAAQDGDDEHPRELGP
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mRNA from alignment at S-ischiensis_contig9:2871144..2871743-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20736.1 ID=mRNA_S-ischiensis_contig9.20736.1|Name=mRNA_S-ischiensis_contig9.20736.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=600bp|location=Sequence derived from alignment at S-ischiensis_contig9:2871144..2871743- (Schizocladia ischiensis KU_0333)
AGCAGCCGAAGCCGGGACAGGCCTGGAGGCTCACGCTCTCGCTGGGGCGA
CGCCTACCTGCAGGTGTCGGGGAGCAAGGCGGAGAGGTGAGATAGGTGTG
ACGGGCACCCGTTGATAGCTTGATGTGATATGTGCACTCACCTTGTGCTG
AAATCGGACGCGACCCACGCTTCGCCGCGCCCCACTACTTGTACTGTACA
AGCACTGTGCTGCGCTTTCTTCGAAGGAGTGCATTTTCTTTTTTCGCGAG
AAGATAAACGAGCGGATGGGAAAGAAGAGGTGTTCCCACTTACGCGAGTT
CAGGGCCCTTCTTTCTGCCGCTCCCGGGCGGAAGTCTGGGCCTTGTATGC
GCGGCGATTGTCGCTCACTCAATACGACACACAGGGATCCATGCACCCCT
TGTCGGCCGCCCCACACACCTCCGGTCTGCCCCTCCCCCTTGTCCTCGCC
GCCAAAAGGCACAGCCTCCACAACGCCAGCAGCAACACTCTGTGGGTCAT
CGAGCGCACCTTCGCCGCCCTGGGCGGGCGCCCCCTCCGGGCGCACGTGC
GACGAGCCGCCCAAGACGGCGACGATGAGCATCCCCGGGAGCTGGGCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2871144..2871743-

>mRNA_S-ischiensis_contig9.20736.1 ID=mRNA_S-ischiensis_contig9.20736.1|Name=mRNA_S-ischiensis_contig9.20736.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=456bp|location=Sequence derived from alignment at S-ischiensis_contig9:2871144..2871743- (Schizocladia ischiensis KU_0333)
AGCAGCCGAAGCCGGGACAGGCCTGGAGGCTCACGCTCTCGCTGGGGCGA
CGCCTACCTGCAGGTGTCGGGGAGCAAGGCGGAGAGAGCAGCCGAAGCCG
GGACAGGCCTGGAGGCTCACGCTCTCGCTGGGGCGACGCCTACCTGCAGG
TGTCGGGGAGCAAGGCGGAGAGGCACAGCCTCCACAACGCCAGCAGCAAC
ACTCTGTGGGTCATCGAGCGCACCTTCGCCGCCCTGGGCGGGCGCCCCCT
CCGGGCGCACGTGCGACGAGCCGCCCAAGACGGCGACGATGAGCATCCCC
GGGAGCTGGGCCCCGCACAGCCTCCACAACGCCAGCAGCAACACTCTGTG
GGTCATCGAGCGCACCTTCGCCGCCCTGGGCGGGCGCCCCCTCCGGGCGC
ACGTGCGACGAGCCGCCCAAGACGGCGACGATGAGCATCCCCGGGAGCTG
GGCCCC
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