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Homology
BLAST of mRNA_S-ischiensis_contig9.20735.1 vs. uniprot
Match: D7FMW8_ECTSI (Inositol triphosphate receptor (IP3R)/ Ryanodine receptor like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW8_ECTSI) HSP 1 Score: 115 bits (289), Expect = 1.390e-25 Identity = 80/202 (39.60%), Postives = 102/202 (50.50%), Query Frame = 1
Query: 157 DRAGLSPTTHLQLLLLEQGVVTMLFEALERLLPASGGPLLRALWPDAE-EEQKSQEDYVALAVAXXXXXXXXXXXXXXXXXXXXXXXXGARGRGMPWGDNFRGLGMAAKYLRQLVWGSMRLATFFVRGHPRGQAAMERYVPLLRRLMGCGLGACEVLAGIYRDNPRTIDSVTAHTVREVLATLPTSLALPDSMRLLARVCQV 759
D +P QLLL EQG+V LFE++ + G L R LW D + EE S V++ G W + R A LRQ V +M LA FF R +PRG+A +E + PLLR L+G GLGACEVLA I RDNPRT VT ++++LATLP S L +SMRLL +C+V
Sbjct: 951 DEFHANPRLRFQLLLREQGIVVQLFESMWTIFREQDGILARHLWWDDDAEESASGSTTVSIG------PPAFSATPRSGATRVGGTDVGGGSNTDEW-EIRRDRSAARHCLRQFVVQAMALADFFARDNPRGKAVLENFTPLLRMLIGSGLGACEVLATIRRDNPRTYAVVTPARIQQILATLPESRDLANSMRLLRSICKV 1145
BLAST of mRNA_S-ischiensis_contig9.20735.1 vs. uniprot
Match: A0A6H5KQK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK2_9PHAE) HSP 1 Score: 112 bits (280), Expect = 2.110e-24 Identity = 78/201 (38.81%), Postives = 101/201 (50.25%), Query Frame = 1
Query: 157 DRAGLSPTTHLQLLLLEQGVVTMLFEALERLLPASGGPLLRALWPDAEEEQKSQEDYVALAVAXXXXXXXXXXXXXXXXXXXXXXXXGARGRGMPWGDNFRGLGMAAKYLRQLVWGSMRLATFFVRGHPRGQAAMERYVPLLRRLMGCGLGACEVLAGIYRDNPRTIDSVTAHTVREVLATLPTSLALPDSMRLLARVCQV 759
D +P QLLL EQG+V LFEA+ ++ G L R LW D + ++ + A G W + R A LRQ V +M LA FF R +PRG+A +E + PLLR L+G GLGACEVLA I RDNPRT VT ++++LATLP S L +SMRLL +C+V
Sbjct: 175 DEFHANPRLRFQLLLREQGIVVQLFEAM-----STDGILARHLWWDGDAKESASGSTSIAPPAFKSTTPRSGATRVGGTDV------GGGSNTDEW-EMRRDRSDARHCLRQFVVQAMALADFFARDNPRGKAVLENFTPLLRMLIGSGLGACEVLATIRRDNPRTYAVVTPARIQQILATLPESRDLANSMRLLRSICKV 363
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 116.3 |
| Seed ortholog evalue | 2.1e-23 |
| Seed eggNOG ortholog | 2880.D7FMW8 |
| Preferred name | RYR1 |
| KEGG ko | ko:K04958,ko:K04960,ko:K04961,ko:K04962,ko:K04963 |
| KEGG TC | 1.A.3.1,1.A.3.1.2,1.A.3.2 |
| KEGG Pathway | ko04020,ko04022,ko04024,ko04070,ko04114,ko04140,ko04210,ko04218,ko04260,ko04261,ko04270,ko04371,ko04540,ko04611,ko04621,ko04713,ko04720,ko04723,ko04724,ko04725,ko04726,ko04728,ko04730,ko04742,ko04745,ko04750,ko04911,ko04912,ko04915,ko04918,ko04921,ko04922,ko04924,ko04925,ko04927,ko04934,ko04970,ko04971,ko04972,ko05010,ko05016,ko05167,ko05205,ko05410,ko05412,ko05414,map04020,map04022,map04024,map04070,map04114,map04140,map04210,map04218,map04260,map04261,map04270,map04371,map04540,map04611,map04621,map04713,map04720,map04723,map04724,map04725,map04726,map04728,map04730,map04742,map04745,map04750,map04911,map04912,map04915,map04918,map04921,map04922,map04924,map04925,map04927,map04934,map04970,map04971,map04972,map05010,map05016,map05167,map05205,map05410,map05412,map05414 |
| EggNOG free text desc. | inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity |
| EggNOG OGs | KOG3533@1,KOG3533@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01009,ko04040,ko04147 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 771 |
| Cds size | 771 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817398.2104595-CDS-S-ischiensis_contig9:2868194..2868399 | 1622817398.2104595-CDS-S-ischiensis_contig9:2868194..2868399 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2868195..2868399 - |
| 1695741084.3581338-CDS-S-ischiensis_contig9:2868194..2868399 | 1695741084.3581338-CDS-S-ischiensis_contig9:2868194..2868399 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2868195..2868399 - |
| 1622817398.2215319-CDS-S-ischiensis_contig9:2868875..2869219 | 1622817398.2215319-CDS-S-ischiensis_contig9:2868875..2869219 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2868876..2869219 - |
| 1695741084.3715417-CDS-S-ischiensis_contig9:2868875..2869219 | 1695741084.3715417-CDS-S-ischiensis_contig9:2868875..2869219 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2868876..2869219 - |
| 1622817398.2325337-CDS-S-ischiensis_contig9:2869693..2869915 | 1622817398.2325337-CDS-S-ischiensis_contig9:2869693..2869915 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2869694..2869915 - |
| 1695741084.3813272-CDS-S-ischiensis_contig9:2869693..2869915 | 1695741084.3813272-CDS-S-ischiensis_contig9:2869693..2869915 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2869694..2869915 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20735.1 >prot_S-ischiensis_contig9.20735.1 ID=prot_S-ischiensis_contig9.20735.1|Name=mRNA_S-ischiensis_contig9.20735.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=257bp
GGGSCPEQQSGSMFPRGEEGEGRREEGGDTSSSSSSASPSSSSSLPSHHR
GYDRAGLSPTTHLQLLLLEQGVVTMLFEALERLLPASGGPLLRALWPDAE
EEQKSQEDYVALAVAAAAHAAAAAEGGDGSGGSSGGRGGGARGRGMPWGD
NFRGLGMAAKYLRQLVWGSMRLATFFVRGHPRGQAAMERYVPLLRRLMGC
GLGACEVLAGIYRDNPRTIDSVTAHTVREVLATLPTSLALPDSMRLLARV
CQVRGVV back to topmRNA from alignment at S-ischiensis_contig9:2868195..2869915- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig9.20735.1 ID=mRNA_S-ischiensis_contig9.20735.1|Name=mRNA_S-ischiensis_contig9.20735.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1721bp|location=Sequence derived from alignment at S-ischiensis_contig9:2868195..2869915- (Schizocladia ischiensis KU_0333)
GGGGGGGGCAGCTGCCCCGAGCAGCAGTCAGGGTCAATGTTTCCCAGGGG
AGAGGAGGGGGAGGGTCGTCGGGAGGAGGGCGGGGACACTTCCTCCTCCT
CCTCCTCTGCGTCCCCTTCTTCCTCGTCGTCGCTGCCATCGCATCATCGC
GGGTATGACCGGGCGGGCCTCAGCCCTACCACCCACCTGCAGCTGCTGCT
GCTGGAGCAAGGGGTTGTGACGGTGGGTGATGACATCGAAATGCGGGAAA
TGCCTTGTTTTTTTTGCGCCTTCGGCGAGGTGATGCTACGCTGAGCAGCA
CCGAGAGCGCGGATTCTGTTGCGTTTGATTCCTAAGAAAGAACGAGCTGT
TTGTTGTTCAGAGAGGCGAGAACACAAAAACGAATGGGAAATCGAGGAGT
CCCTACTTGCTGTAAGGTAGTGGCCACTGGTCTCAGGACTACGGCAAGCG
CAACTTGAGTACATACGAGTATATGTATACGAGTATGTAAGCACAGGCAC
ACGCGTAAGCACTTTGTGCTTTCCAAGGCAAAGGTTTGTTGCCGAGTCGA
AAAGTGCTCCGAGTAGTACTTTGTGTACCTGTACCGAATGTGGTGTGCAA
TTTTCCAAGCAGGTGGCACGCCGCCGCTCGCCGGCCCGCTCGCCCGCCCA
CCCACCCACCCGCCCACCCATCACCCCTGTATCCCTCCCCCCGCAGATGC
TTTTCGAAGCGCTTGAACGCCTGCTGCCCGCCAGTGGCGGGCCCCTCCTA
CGCGCCCTCTGGCCCGACGCAGAAGAGGAGCAGAAGAGCCAAGAGGATTA
TGTGGCCCTGGCTGTGGCCGCTGCCGCCCACGCAGCCGCGGCGGCAGAGG
GGGGCGACGGCAGCGGTGGCAGCAGCGGCGGTCGCGGCGGCGGCGCCAGG
GGGCGTGGCATGCCGTGGGGGGACAACTTCAGGGGCCTGGGCATGGCGGC
CAAGTACCTGCGGCAGCTGGTGTGGGGGTCTATGCGCCTGGCGACGTTCT
TTGTAAGGGGGCACCCGCGGGGGCAGGCGGCCATGGAGCGGTGAGCGAGC
CCGCTGGTGTTTCTCCCCCCGCCCATCTCTGTCTGCCTCTCTCTCTCCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTTCCTCTGTCTCCCTTTCTCTCCCTCTCTCTCTTCT
CTCTCTCTTCCGTCTCTCTCTGCCTCCCTCCCTCCCCCCCCTCTCTCTCT
GTTCCTGCCTCCCTCCCTCTCCCTCTCCCTCTCTATCTCTATCTCCCCCC
TCCCCCCTCCCTCCCCCTCTCTTGCACCCTCCCCCTCTCTCTGTCCGCCC
ACCCCCCCCTCTCTCGCTCTGGCTCCATGCACACACTCTCCCCCTCCCCC
TTTATTTCTCTCTCTCTCTTCTGTCTTTCCCTCGCCCCCCCCCCCTGTCC
CCCCCCCCCCCCCTCTCTCCCCTAACCTTGCTCGTGCGCGCGTGCGCACA
CACACACACACACAAGGTACGTGCCGCTGCTGCGCCGGCTCATGGGCTGC
GGCCTGGGGGCGTGCGAGGTCTTGGCTGGCATCTACCGCGACAACCCCCG
CACCATCGACTCTGTGACGGCCCACACGGTGCGGGAGGTCCTGGCCACCC
TCCCCACAAGCCTCGCCCTGCCCGACAGTATGCGCCTCCTGGCACGTGTG
TGCCAGGTCCGGGGGGTGGTG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig9:2868195..2869915- >mRNA_S-ischiensis_contig9.20735.1 ID=mRNA_S-ischiensis_contig9.20735.1|Name=mRNA_S-ischiensis_contig9.20735.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1542bp|location=Sequence derived from alignment at S-ischiensis_contig9:2868195..2869915- (Schizocladia ischiensis KU_0333)
GGGGGGGGCAGCTGCCCCGAGCAGCAGTCAGGGTCAATGTTTCCCAGGGG
AGAGGAGGGGGAGGGTCGTCGGGAGGAGGGCGGGGACACTTCCTCCTCCT
CCTCCTCTGCGTCCCCTTCTTCCTCGTCGTCGCTGCCATCGCATCATCGC
GGGTATGACCGGGCGGGCCTCAGCCCTACCACCCACCTGCAGCTGCTGCT
GCTGGAGCAAGGGGTTGTGACGGGGGGGGGCAGCTGCCCCGAGCAGCAGT
CAGGGTCAATGTTTCCCAGGGGAGAGGAGGGGGAGGGTCGTCGGGAGGAG
GGCGGGGACACTTCCTCCTCCTCCTCCTCTGCGTCCCCTTCTTCCTCGTC
GTCGCTGCCATCGCATCATCGCGGGTATGACCGGGCGGGCCTCAGCCCTA
CCACCCACCTGCAGCTGCTGCTGCTGGAGCAAGGGGTTGTGACGATGCTT
TTCGAAGCGCTTGAACGCCTGCTGCCCGCCAGTGGCGGGCCCCTCCTACG
CGCCCTCTGGCCCGACGCAGAAGAGGAGCAGAAGAGCCAAGAGGATTATG
TGGCCCTGGCTGTGGCCGCTGCCGCCCACGCAGCCGCGGCGGCAGAGGGG
GGCGACGGCAGCGGTGGCAGCAGCGGCGGTCGCGGCGGCGGCGCCAGGGG
GCGTGGCATGCCGTGGGGGGACAACTTCAGGGGCCTGGGCATGGCGGCCA
AGTACCTGCGGCAGCTGGTGTGGGGGTCTATGCGCCTGGCGACGTTCTTT
GTAAGGGGGCACCCGCGGGGGCAGGCGGCCATGGAGCGATGCTTTTCGAA
GCGCTTGAACGCCTGCTGCCCGCCAGTGGCGGGCCCCTCCTACGCGCCCT
CTGGCCCGACGCAGAAGAGGAGCAGAAGAGCCAAGAGGATTATGTGGCCC
TGGCTGTGGCCGCTGCCGCCCACGCAGCCGCGGCGGCAGAGGGGGGCGAC
GGCAGCGGTGGCAGCAGCGGCGGTCGCGGCGGCGGCGCCAGGGGGCGTGG
CATGCCGTGGGGGGACAACTTCAGGGGCCTGGGCATGGCGGCCAAGTACC
TGCGGCAGCTGGTGTGGGGGTCTATGCGCCTGGCGACGTTCTTTGTAAGG
GGGCACCCGCGGGGGCAGGCGGCCATGGAGCGGTACGTGCCGCTGCTGCG
CCGGCTCATGGGCTGCGGCCTGGGGGCGTGCGAGGTCTTGGCTGGCATCT
ACCGCGACAACCCCCGCACCATCGACTCTGTGACGGCCCACACGGTGCGG
GAGGTCCTGGCCACCCTCCCCACAAGCCTCGCCCTGCCCGACAGTATGCG
CCTCCTGGCACGTGTGTGCCAGGTCCGGGGGGTGGTGGTACGTGCCGCTG
CTGCGCCGGCTCATGGGCTGCGGCCTGGGGGCGTGCGAGGTCTTGGCTGG
CATCTACCGCGACAACCCCCGCACCATCGACTCTGTGACGGCCCACACGG
TGCGGGAGGTCCTGGCCACCCTCCCCACAAGCCTCGCCCTGCCCGACAGT
ATGCGCCTCCTGGCACGTGTGTGCCAGGTCCGGGGGGTGGTG back to top
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