mRNA_S-ischiensis_contig9.20734.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20734.1
Unique NamemRNA_S-ischiensis_contig9.20734.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2866555..2867036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size482
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.2101645-UTR-S-ischiensis_contig9:2866554..28667061622817373.2101645-UTR-S-ischiensis_contig9:2866554..2866706Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2866555..2866706 +
1695741064.2201629-UTR-S-ischiensis_contig9:2866554..28667061695741064.2201629-UTR-S-ischiensis_contig9:2866554..2866706Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2866555..2866706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.2215426-CDS-S-ischiensis_contig9:2866706..28670361622817373.2215426-CDS-S-ischiensis_contig9:2866706..2867036Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2866707..2867036 +
1695741064.2308607-CDS-S-ischiensis_contig9:2866706..28670361695741064.2308607-CDS-S-ischiensis_contig9:2866706..2867036Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2866707..2867036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20734.1prot_S-ischiensis_contig9.20734.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2866707..2867036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20734.1

>prot_S-ischiensis_contig9.20734.1 ID=prot_S-ischiensis_contig9.20734.1|Name=mRNA_S-ischiensis_contig9.20734.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=110bp
MRTSWYVKSGTAPGAGCRGGNGGGGSTPSTAGLGAAAAKAAIMDGVAFSP
LPVAAVGLATIGGARSLPSSAGSVAVAMLGFAAGVEEAPAEEALPPAAAA
AAAPAPPLFG
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mRNA from alignment at S-ischiensis_contig9:2866555..2867036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20734.1 ID=mRNA_S-ischiensis_contig9.20734.1|Name=mRNA_S-ischiensis_contig9.20734.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=482bp|location=Sequence derived from alignment at S-ischiensis_contig9:2866555..2867036+ (Schizocladia ischiensis KU_0333)
GCGCACGGGTTATGGCGCCGACGCCCTCCTCCCAGGCGTTGAAAACCACC
TCCCGCCCGGGCCCGGCCAGGCGCCCCAGGAGGGTTACGTGAAGGCCCCA
GCCGCCGTCGCCGCCGCCGCCGCCGCCACCGCTGCCGCTGCCGCCACTAC
CCATGCGAACTAGCTGGTACGTGAAGAGCGGCACGGCGCCCGGCGCTGGC
TGTCGTGGCGGCAACGGCGGCGGCGGCAGCACACCGAGCACAGCTGGCCT
GGGTGCTGCTGCCGCCAAAGCAGCCATAATGGACGGAGTCGCTTTCTCGC
CTTTGCCTGTCGCCGCCGTCGGCTTGGCCACCATCGGAGGAGCCAGATCC
TTGCCTTCGTCTGCCGGCTCCGTCGCCGTGGCCATGCTGGGCTTCGCAGC
GGGGGTCGAAGAGGCGCCGGCGGAGGAGGCGCTCCCGCCAGCGGCGGCGG
CGGCGGCGGCACCGGCTCCTCCACTGTTTGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2866555..2867036+

>mRNA_S-ischiensis_contig9.20734.1 ID=mRNA_S-ischiensis_contig9.20734.1|Name=mRNA_S-ischiensis_contig9.20734.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=660bp|location=Sequence derived from alignment at S-ischiensis_contig9:2866555..2867036+ (Schizocladia ischiensis KU_0333)
ATGCGAACTAGCTGGTACGTGAAGAGCGGCACGGCGCCCGGCGCTGGCTG
TCGTGGCGGCAACGGCGGCGGCGGCAGCACACCGAGCACAGCTGGCCTGG
GTGCTGCTGCCGCCAAAGCAGCCATAATGGACGGAGTCGCTTTCTCGCCT
TTGCCTGTCGCCGCCGTCGGCTTGGCCACCATCGGAGGAGCCAGATCCTT
GCCTTCGTCTGCCGGCTCCGTCGCCGTGGCCATGCTGGGCTTCGCAGCGG
GGGTCGAAGAGGCGCCGGCGGAGGAGGCGCTCCCGCCAGCGGCGGCGGCG
GCGGCGGCACCGGCTCCTCCACTGTTTGGTATGCGAACTAGCTGGTACGT
GAAGAGCGGCACGGCGCCCGGCGCTGGCTGTCGTGGCGGCAACGGCGGCG
GCGGCAGCACACCGAGCACAGCTGGCCTGGGTGCTGCTGCCGCCAAAGCA
GCCATAATGGACGGAGTCGCTTTCTCGCCTTTGCCTGTCGCCGCCGTCGG
CTTGGCCACCATCGGAGGAGCCAGATCCTTGCCTTCGTCTGCCGGCTCCG
TCGCCGTGGCCATGCTGGGCTTCGCAGCGGGGGTCGAAGAGGCGCCGGCG
GAGGAGGCGCTCCCGCCAGCGGCGGCGGCGGCGGCGGCACCGGCTCCTCC
ACTGTTTGGT
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