mRNA_S-ischiensis_contig9.20720.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20720.1
Unique NamemRNA_S-ischiensis_contig9.20720.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2821503..2822429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size928
Cds size927
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.0174315-CDS-S-ischiensis_contig9:2821502..28224291622817373.0174315-CDS-S-ischiensis_contig9:2821502..2822429Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2821503..2822429 +
1695741064.1163256-CDS-S-ischiensis_contig9:2821502..28224291695741064.1163256-CDS-S-ischiensis_contig9:2821502..2822429Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2821503..2822429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20720.1prot_S-ischiensis_contig9.20720.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2821503..2822429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20720.1

>prot_S-ischiensis_contig9.20720.1 ID=prot_S-ischiensis_contig9.20720.1|Name=mRNA_S-ischiensis_contig9.20720.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=309bp
MPQPRPRAHYGPVCCTSSSSSLVQAHLSVEAVRGNDEEASATGVLHVSEA
RFERTKHRFGGRSNRVMLRGGTGDPERVDLGAGCRIAATAEALHLELHVR
CVFIVLVSRRPDGAGRGAPLAPPSAPNSASEAWTGWLVTLSPQDMFTAIS
VDTFHVPPPRRGGGGGTPRADGARRSKRGGGAGGDGDDNDDGRSDEPEIA
VLDGPTVVCRPAGSDGIGAIEVFSAAAAAGGMGGDSDSDADDRQSLGDLA
RLRLSRSATEQGDAPEAGRGGGPNPAGRLRHGDKHGVVSGGGDATNGCMR
QGNPCPCVR
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mRNA from alignment at S-ischiensis_contig9:2821503..2822429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20720.1 ID=mRNA_S-ischiensis_contig9.20720.1|Name=mRNA_S-ischiensis_contig9.20720.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=927bp|location=Sequence derived from alignment at S-ischiensis_contig9:2821503..2822429+ (Schizocladia ischiensis KU_0333)
ATGCCCCAACCCCGCCCCAGGGCCCACTACGGCCCTGTGTGCTGCACATC
GTCCTCCTCTTCCCTTGTCCAGGCACACCTTTCTGTCGAGGCGGTCCGTG
GCAATGACGAGGAGGCGAGCGCGACCGGTGTCCTCCACGTCTCGGAGGCC
CGCTTCGAGCGAACCAAGCACCGGTTCGGGGGGCGCTCGAATCGCGTCAT
GCTCCGGGGAGGCACCGGCGATCCCGAACGGGTTGATCTGGGCGCCGGGT
GCAGGATTGCTGCCACGGCAGAGGCCCTACACTTGGAGTTGCACGTGCGC
TGTGTCTTCATCGTCCTTGTCTCCAGGCGGCCCGACGGGGCCGGCCGTGG
GGCGCCCCTCGCCCCCCCCTCTGCACCGAACTCCGCCAGCGAGGCGTGGA
CCGGCTGGCTGGTCACGCTGTCCCCACAGGACATGTTCACGGCCATTTCG
GTGGATACCTTCCACGTGCCCCCGCCCCGCCGCGGTGGCGGTGGTGGCAC
CCCTCGGGCCGACGGAGCGCGCCGCTCAAAGCGCGGCGGCGGCGCCGGCG
GCGATGGTGACGATAACGATGACGGCAGAAGCGACGAGCCCGAAATAGCT
GTCCTGGATGGCCCCACTGTTGTGTGCCGTCCGGCTGGCAGCGACGGCAT
CGGCGCCATTGAGGTCTTCTCCGCGGCAGCCGCCGCCGGCGGCATGGGCG
GGGACAGCGACAGCGACGCTGATGACCGTCAAAGTCTCGGGGACTTGGCG
AGGCTACGCCTGTCGCGGTCTGCCACGGAACAGGGAGATGCCCCCGAAGC
GGGCCGGGGGGGCGGGCCAAATCCTGCGGGCCGACTCCGGCACGGGGACA
AACACGGAGTTGTTTCCGGGGGGGGCGACGCCACCAATGGTTGCATGCGC
CAGGGCAACCCTTGCCCTTGCGTCCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2821503..2822429+

>mRNA_S-ischiensis_contig9.20720.1 ID=mRNA_S-ischiensis_contig9.20720.1|Name=mRNA_S-ischiensis_contig9.20720.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1854bp|location=Sequence derived from alignment at S-ischiensis_contig9:2821503..2822429+ (Schizocladia ischiensis KU_0333)
ATGCCCCAACCCCGCCCCAGGGCCCACTACGGCCCTGTGTGCTGCACATC
GTCCTCCTCTTCCCTTGTCCAGGCACACCTTTCTGTCGAGGCGGTCCGTG
GCAATGACGAGGAGGCGAGCGCGACCGGTGTCCTCCACGTCTCGGAGGCC
CGCTTCGAGCGAACCAAGCACCGGTTCGGGGGGCGCTCGAATCGCGTCAT
GCTCCGGGGAGGCACCGGCGATCCCGAACGGGTTGATCTGGGCGCCGGGT
GCAGGATTGCTGCCACGGCAGAGGCCCTACACTTGGAGTTGCACGTGCGC
TGTGTCTTCATCGTCCTTGTCTCCAGGCGGCCCGACGGGGCCGGCCGTGG
GGCGCCCCTCGCCCCCCCCTCTGCACCGAACTCCGCCAGCGAGGCGTGGA
CCGGCTGGCTGGTCACGCTGTCCCCACAGGACATGTTCACGGCCATTTCG
GTGGATACCTTCCACGTGCCCCCGCCCCGCCGCGGTGGCGGTGGTGGCAC
CCCTCGGGCCGACGGAGCGCGCCGCTCAAAGCGCGGCGGCGGCGCCGGCG
GCGATGGTGACGATAACGATGACGGCAGAAGCGACGAGCCCGAAATAGCT
GTCCTGGATGGCCCCACTGTTGTGTGCCGTCCGGCTGGCAGCGACGGCAT
CGGCGCCATTGAGGTCTTCTCCGCGGCAGCCGCCGCCGGCGGCATGGGCG
GGGACAGCGACAGCGACGCTGATGACCGTCAAAGTCTCGGGGACTTGGCG
AGGCTACGCCTGTCGCGGTCTGCCACGGAACAGGGAGATGCCCCCGAAGC
GGGCCGGGGGGGCGGGCCAAATCCTGCGGGCCGACTCCGGCACGGGGACA
AACACGGAGTTGTTTCCGGGGGGGGCGACGCCACCAATGGTTGCATGCGC
CAGGGCAACCCTTGCCCTTGCGTCCGGATGCCCCAACCCCGCCCCAGGGC
CCACTACGGCCCTGTGTGCTGCACATCGTCCTCCTCTTCCCTTGTCCAGG
CACACCTTTCTGTCGAGGCGGTCCGTGGCAATGACGAGGAGGCGAGCGCG
ACCGGTGTCCTCCACGTCTCGGAGGCCCGCTTCGAGCGAACCAAGCACCG
GTTCGGGGGGCGCTCGAATCGCGTCATGCTCCGGGGAGGCACCGGCGATC
CCGAACGGGTTGATCTGGGCGCCGGGTGCAGGATTGCTGCCACGGCAGAG
GCCCTACACTTGGAGTTGCACGTGCGCTGTGTCTTCATCGTCCTTGTCTC
CAGGCGGCCCGACGGGGCCGGCCGTGGGGCGCCCCTCGCCCCCCCCTCTG
CACCGAACTCCGCCAGCGAGGCGTGGACCGGCTGGCTGGTCACGCTGTCC
CCACAGGACATGTTCACGGCCATTTCGGTGGATACCTTCCACGTGCCCCC
GCCCCGCCGCGGTGGCGGTGGTGGCACCCCTCGGGCCGACGGAGCGCGCC
GCTCAAAGCGCGGCGGCGGCGCCGGCGGCGATGGTGACGATAACGATGAC
GGCAGAAGCGACGAGCCCGAAATAGCTGTCCTGGATGGCCCCACTGTTGT
GTGCCGTCCGGCTGGCAGCGACGGCATCGGCGCCATTGAGGTCTTCTCCG
CGGCAGCCGCCGCCGGCGGCATGGGCGGGGACAGCGACAGCGACGCTGAT
GACCGTCAAAGTCTCGGGGACTTGGCGAGGCTACGCCTGTCGCGGTCTGC
CACGGAACAGGGAGATGCCCCCGAAGCGGGCCGGGGGGGCGGGCCAAATC
CTGCGGGCCGACTCCGGCACGGGGACAAACACGGAGTTGTTTCCGGGGGG
GGCGACGCCACCAATGGTTGCATGCGCCAGGGCAACCCTTGCCCTTGCGT
CCGG
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