mRNA_S-ischiensis_contig9.20718.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20718.1
Unique NamemRNA_S-ischiensis_contig9.20718.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20718.1 vs. uniprot
Match: D8LSM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSM8_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 9.290e-11
Identity = 44/99 (44.44%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    7 DPDLEALVNSSFIRAMGESVSAIQRNNTRLLKDADRAEAAVAAKRHQVEALASAAATLKDAAGRMPEAR--RTVAATLREMEGACEALARLNDTLAAKE 297
            DPDL+A++NS+ +  +GE V+ IQ+ N+RLL++ DR   A A KR  VE +ASAAA+L  A   +   R  R ++A  ++    CEA+ARL++ LAA+E
Sbjct:  202 DPDLDAVLNSALVLGLGERVADIQKRNSRLLQEVDRIGRAAADKRQGVERVASAAASLTAAGSDLLPRRALRLLSAARQDAVALCEAMARLDELLAARE 300
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSM8_ECTSI9.290e-1144.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2819787..2820506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size334
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817397.7076595-CDS-S-ischiensis_contig9:2819788..28199711622817397.7076595-CDS-S-ischiensis_contig9:2819788..2819971Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2819789..2819971 -
1695741083.9473813-CDS-S-ischiensis_contig9:2819788..28199711695741083.9473813-CDS-S-ischiensis_contig9:2819788..2819971Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2819789..2819971 -
1622817397.7190447-CDS-S-ischiensis_contig9:2820359..28205061622817397.7190447-CDS-S-ischiensis_contig9:2820359..2820506Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2820360..2820506 -
1695741083.9623134-CDS-S-ischiensis_contig9:2820359..28205061695741083.9623134-CDS-S-ischiensis_contig9:2820359..2820506Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2820360..2820506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20718.1prot_S-ischiensis_contig9.20718.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2819789..2820506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20718.1

>prot_S-ischiensis_contig9.20718.1 ID=prot_S-ischiensis_contig9.20718.1|Name=mRNA_S-ischiensis_contig9.20718.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=110bp
DVDPDLEALVNSSFIRAMGESVSAIQRNNTRLLKDADRAEAAVAAKRHQV
EALASAAATLKDAAGRMPEARRTVAATLREMEGACEALARLNDTLAAKES
AAAAAAAERG
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mRNA from alignment at S-ischiensis_contig9:2819787..2820506-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20718.1 ID=mRNA_S-ischiensis_contig9.20718.1|Name=mRNA_S-ischiensis_contig9.20718.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=720bp|location=Sequence derived from alignment at S-ischiensis_contig9:2819787..2820506- (Schizocladia ischiensis KU_0333)
GATGTAGACCCGGACCTGGAGGCGTTGGTGAATAGCAGTTTCATCCGGGC
CATGGGGGAGAGCGTCAGCGCGATCCAGAGGAACAACACGCGGCTGTTGA
AGGATGCGGACAGGGCCGAGGCTGCCGTGGCTGCCAAGCGGCACCAGGTG
AGTGAGCTCGGGTTGGGTGGGGTGGTTTGGGTTGCCCGCGTGTTGTGCAG
GTGGCTTGGCCTCCCCTCTCCTCGTCCTCTACGTCCAGACACCATTTAGG
GTGCTGTGTTGAAGTACTGTAGCCATGGCCAAACTGCAGCAATGGTCAAT
GGTCTCGGGACTACGGCAAGCACGGCGTGAGTACATATACTGCAGCAGCA
TTTCACGTACTGTGTTGCGCTTTTCGACGCCTGTGTACTTGCTGAGGCAG
AAAATTTGTAGAATGGGCGCCCCCGCTCGTCACTGGCTGTACAACTGTTA
CAAGCAACTCATCCCATGTCTCACCCCACCCCCCCTCCCTGGCCATACAA
TACCCCTGTACACCCCCCCCCCCGGGGTTTTGCAGGTGGAGGCCCTGGCA
TCCGCGGCCGCAACCCTGAAAGACGCGGCCGGCCGGATGCCAGAGGCCCG
GAGGACCGTCGCGGCCACCCTTCGGGAGATGGAGGGCGCGTGTGAGGCCC
TGGCAAGACTGAATGACACCCTTGCCGCGAAGGAGTCTGCTGCGGCGGCC
GCGGCGGCCGAGAGAGGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2819787..2820506-

>mRNA_S-ischiensis_contig9.20718.1 ID=mRNA_S-ischiensis_contig9.20718.1|Name=mRNA_S-ischiensis_contig9.20718.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=660bp|location=Sequence derived from alignment at S-ischiensis_contig9:2819787..2820506- (Schizocladia ischiensis KU_0333)
GATGTAGACCCGGACCTGGAGGCGTTGGTGAATAGCAGTTTCATCCGGGC
CATGGGGGAGAGCGTCAGCGCGATCCAGAGGAACAACACGCGGCTGTTGA
AGGATGCGGACAGGGCCGAGGCTGCCGTGGCTGCCAAGCGGCACCAGGAT
GTAGACCCGGACCTGGAGGCGTTGGTGAATAGCAGTTTCATCCGGGCCAT
GGGGGAGAGCGTCAGCGCGATCCAGAGGAACAACACGCGGCTGTTGAAGG
ATGCGGACAGGGCCGAGGCTGCCGTGGCTGCCAAGCGGCACCAGGTGGAG
GCCCTGGCATCCGCGGCCGCAACCCTGAAAGACGCGGCCGGCCGGATGCC
AGAGGCCCGGAGGACCGTCGCGGCCACCCTTCGGGAGATGGAGGGCGCGT
GTGAGGCCCTGGCAAGACTGAATGACACCCTTGCCGCGAAGGAGTCTGCT
GCGGCGGCCGCGGCGGCCGAGAGAGGGGTGGAGGCCCTGGCATCCGCGGC
CGCAACCCTGAAAGACGCGGCCGGCCGGATGCCAGAGGCCCGGAGGACCG
TCGCGGCCACCCTTCGGGAGATGGAGGGCGCGTGTGAGGCCCTGGCAAGA
CTGAATGACACCCTTGCCGCGAAGGAGTCTGCTGCGGCGGCCGCGGCGGC
CGAGAGAGGG
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