mRNA_S-ischiensis_contig9.20709.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20709.1
Unique NamemRNA_S-ischiensis_contig9.20709.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20709.1 vs. uniprot
Match: D8LI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI13_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.590e-23
Identity = 53/93 (56.99%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    1 WTPSLREHWQEHVMAARTCQELTEALLLLESCLHPGWLRPWYRHLLKFIPGEAHLLRLCTPGALALRLFSLDQALLYDKVDGATARGANLAAG 279
            WTPSLRE W  HV +A   Q+L EALLLLE CL   WL+PWYR   + +    HLLRL TP A+ALRLF+LD+A+LYDKV     RG+ L  G
Sbjct: 2292 WTPSLRECWVSHVASATRSQDLMEALLLLELCLDQKWLKPWYRPAQQKMQSAWHLLRLSTPAAVALRLFALDRAILYDKVATRAQRGSRLRNG 2384
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BLAST of mRNA_S-ischiensis_contig9.20709.1 vs. uniprot
Match: A0A6H5KQ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 5.760e-22
Identity = 52/93 (55.91%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 WTPSLREHWQEHVMAARTCQELTEALLLLESCLHPGWLRPWYRHLLKFIPGEAHLLRLCTPGALALRLFSLDQALLYDKVDGATARGANLAAG 279
            WTPSLRE W   V +A   Q+L EALLLLE CL   WL+PWYR   + +    HLLRL TP A+ALRLF+LD+A+LYDKV     RG+ L  G
Sbjct: 2740 WTPSLRECWVSQVASATRGQDLMEALLLLELCLDQKWLKPWYRPAQQKMQSAWHLLRLSTPAAVALRLFALDRAILYDKVATRAQRGSRLRNG 2832
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BLAST of mRNA_S-ischiensis_contig9.20709.1 vs. uniprot
Match: A0A4D9D954_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D954_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 8.650e-16
Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:    1 WTPSLREHWQEHVMAARTCQELTEALLLLESCLHPGWLRPWYRHLLK-FIPGEAHLLRL-CTPGALALRLFSLDQALLYDK 237
            WT +L+  W  H+M A T  E+ E LLLLESCLHP WL+PW+  L + +    +HLLRL  T  A A  LF LD+A+LYDK
Sbjct: 1874 WTEALQAQWINHLMEAETPHEVMEGLLLLESCLHPEWLKPWFHPLRRSYAATSSHLLRLGTTAAAAAFHLFILDKAILYDK 1954
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BLAST of mRNA_S-ischiensis_contig9.20709.1 vs. uniprot
Match: A0A7R9U4T2_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4T2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.660e-12
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:   10 SLREHWQEHVMAARTCQELTEALLLLESCLHPGWLRPWYRHLLKFIPGEAHLLRLCTPGALALRLFSLDQALLYDKVD-GATARGANLAAGR 282
            S+RE W+ HV+++ T QEL+EA+++LES L   W+      +       A+ LR+ TPGA+ALRLF+LDQ + YDK++ G   RG +   GR
Sbjct: 1678 SVREAWESHVLSSETVQELSEAVVILESFLQKAWIGKGSGTVSS---SAAYFLRIATPGAVALRLFALDQLVRYDKLEAGGRRRGRSANQGR 1766
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LI13_ECTSI2.590e-2356.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ21_9PHAE5.760e-2255.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9D954_9STRA8.650e-1651.85Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7R9U4T2_9STRA2.660e-1243.48Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2730148..2730603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue7.5e-21
Seed eggNOG ortholog2880.D8LI13
EggNOG free text desc.mRNA processing
EggNOG OGsKOG0825@1,KOG0825@2759
COG Functional cat.LO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, WHIM and bromodomain protein
Ec32 orthologEc-04_002830.1
Exons1
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817396.8995326-CDS-S-ischiensis_contig9:2730147..27306031622817396.8995326-CDS-S-ischiensis_contig9:2730147..2730603Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2730148..2730603 +
1695741083.3208776-CDS-S-ischiensis_contig9:2730147..27306031695741083.3208776-CDS-S-ischiensis_contig9:2730147..2730603Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2730148..2730603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20709.1prot_S-ischiensis_contig9.20709.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2730148..2730603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20709.1

>prot_S-ischiensis_contig9.20709.1 ID=prot_S-ischiensis_contig9.20709.1|Name=mRNA_S-ischiensis_contig9.20709.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=152bp
WTPSLREHWQEHVMAARTCQELTEALLLLESCLHPGWLRPWYRHLLKFIP
GEAHLLRLCTPGALALRLFSLDQALLYDKVDGATARGANLAAGRRVTRGL
VHGWGDDGGDGGATGRRVAAAAVSSRRTTRTSTMAAGGGAGGAARPQGRQ
TR
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mRNA from alignment at S-ischiensis_contig9:2730148..2730603+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20709.1 ID=mRNA_S-ischiensis_contig9.20709.1|Name=mRNA_S-ischiensis_contig9.20709.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=456bp|location=Sequence derived from alignment at S-ischiensis_contig9:2730148..2730603+ (Schizocladia ischiensis KU_0333)
TGGACGCCGTCGCTAAGGGAGCACTGGCAGGAGCACGTGATGGCGGCGCG
GACCTGCCAGGAGTTGACCGAGGCGCTCCTGCTGCTGGAGTCGTGCCTCC
ACCCGGGGTGGCTCCGCCCGTGGTACCGGCACCTGCTCAAGTTCATACCG
GGGGAGGCGCACCTCCTGCGCCTGTGCACCCCGGGGGCGCTCGCCCTGCG
CCTCTTCTCCTTGGACCAGGCGCTGCTCTACGACAAGGTGGACGGCGCCA
CCGCGCGCGGCGCCAACCTGGCGGCCGGGCGCCGGGTCACCCGGGGGCTG
GTGCATGGGTGGGGGGATGACGGCGGAGACGGCGGTGCTACCGGGCGGCG
TGTGGCGGCGGCGGCGGTGAGCTCCCGGCGCACCACCCGGACCTCGACCA
TGGCGGCGGGGGGCGGGGCTGGGGGAGCTGCCAGGCCGCAAGGGCGGCAG
ACGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2730148..2730603+

>mRNA_S-ischiensis_contig9.20709.1 ID=mRNA_S-ischiensis_contig9.20709.1|Name=mRNA_S-ischiensis_contig9.20709.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=912bp|location=Sequence derived from alignment at S-ischiensis_contig9:2730148..2730603+ (Schizocladia ischiensis KU_0333)
TGGACGCCGTCGCTAAGGGAGCACTGGCAGGAGCACGTGATGGCGGCGCG
GACCTGCCAGGAGTTGACCGAGGCGCTCCTGCTGCTGGAGTCGTGCCTCC
ACCCGGGGTGGCTCCGCCCGTGGTACCGGCACCTGCTCAAGTTCATACCG
GGGGAGGCGCACCTCCTGCGCCTGTGCACCCCGGGGGCGCTCGCCCTGCG
CCTCTTCTCCTTGGACCAGGCGCTGCTCTACGACAAGGTGGACGGCGCCA
CCGCGCGCGGCGCCAACCTGGCGGCCGGGCGCCGGGTCACCCGGGGGCTG
GTGCATGGGTGGGGGGATGACGGCGGAGACGGCGGTGCTACCGGGCGGCG
TGTGGCGGCGGCGGCGGTGAGCTCCCGGCGCACCACCCGGACCTCGACCA
TGGCGGCGGGGGGCGGGGCTGGGGGAGCTGCCAGGCCGCAAGGGCGGCAG
ACGCGGTGGACGCCGTCGCTAAGGGAGCACTGGCAGGAGCACGTGATGGC
GGCGCGGACCTGCCAGGAGTTGACCGAGGCGCTCCTGCTGCTGGAGTCGT
GCCTCCACCCGGGGTGGCTCCGCCCGTGGTACCGGCACCTGCTCAAGTTC
ATACCGGGGGAGGCGCACCTCCTGCGCCTGTGCACCCCGGGGGCGCTCGC
CCTGCGCCTCTTCTCCTTGGACCAGGCGCTGCTCTACGACAAGGTGGACG
GCGCCACCGCGCGCGGCGCCAACCTGGCGGCCGGGCGCCGGGTCACCCGG
GGGCTGGTGCATGGGTGGGGGGATGACGGCGGAGACGGCGGTGCTACCGG
GCGGCGTGTGGCGGCGGCGGCGGTGAGCTCCCGGCGCACCACCCGGACCT
CGACCATGGCGGCGGGGGGCGGGGCTGGGGGAGCTGCCAGGCCGCAAGGG
CGGCAGACGCGG
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