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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 87.0 |
| Seed ortholog evalue | 1.2e-14 |
| Seed eggNOG ortholog | 2880.D8LI13 |
| EggNOG free text desc. | mRNA processing |
| EggNOG OGs | KOG0825@1,KOG0825@2759 |
| COG Functional cat. | LO |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 704 |
| Cds size | 696 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817396.817718-UTR-S-ischiensis_contig9:2725032..2725038 | 1622817396.817718-UTR-S-ischiensis_contig9:2725032..2725038 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 2725033..2725038 + |
| 1695741083.2652593-UTR-S-ischiensis_contig9:2725032..2725038 | 1695741083.2652593-UTR-S-ischiensis_contig9:2725032..2725038 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 2725033..2725038 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817396.8344073-CDS-S-ischiensis_contig9:2725038..2725092 | 1622817396.8344073-CDS-S-ischiensis_contig9:2725038..2725092 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2725039..2725092 + |
| 1695741083.2771542-CDS-S-ischiensis_contig9:2725038..2725092 | 1695741083.2771542-CDS-S-ischiensis_contig9:2725038..2725092 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2725039..2725092 + |
| 1622817396.8466704-CDS-S-ischiensis_contig9:2725605..2725737 | 1622817396.8466704-CDS-S-ischiensis_contig9:2725605..2725737 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2725606..2725737 + |
| 1695741083.2880478-CDS-S-ischiensis_contig9:2725605..2725737 | 1695741083.2880478-CDS-S-ischiensis_contig9:2725605..2725737 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2725606..2725737 + |
| 1622817396.8579895-CDS-S-ischiensis_contig9:2726765..2727089 | 1622817396.8579895-CDS-S-ischiensis_contig9:2726765..2727089 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2726766..2727089 + |
| 1695741083.297431-CDS-S-ischiensis_contig9:2726765..2727089 | 1695741083.297431-CDS-S-ischiensis_contig9:2726765..2727089 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2726766..2727089 + |
| 1622817396.8687575-CDS-S-ischiensis_contig9:2727983..2728169 | 1622817396.8687575-CDS-S-ischiensis_contig9:2727983..2728169 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2727984..2728169 + |
| 1695741083.3083289-CDS-S-ischiensis_contig9:2727983..2728169 | 1695741083.3083289-CDS-S-ischiensis_contig9:2727983..2728169 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2727984..2728169 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20707.1 >prot_S-ischiensis_contig9.20707.1 ID=prot_S-ischiensis_contig9.20707.1|Name=mRNA_S-ischiensis_contig9.20707.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=232bp
MVVGLWPEDIMERVQTAERAGTPPTAPSFPRVGTSKAAGVNGPRVHELCA
LNMFTHFFNHCKAHLQLRIQAVEEAIHLSGIRTLPLGSDRHHRRYLRVSG
DPHRIYVLPPPKSEDDQEGDGGAAGGGAPTGGPRGAGIAAAAPRAAIAAA
AEASGNSSPTPPPGVAVCVEEGTEVAVAAAAPAEGEGPRVPREKGGDCMV
YQTLEGLRSLVGWLSESGVREGPLRATIIDAF back to topmRNA from alignment at S-ischiensis_contig9:2725033..2728169+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig9.20707.1 ID=mRNA_S-ischiensis_contig9.20707.1|Name=mRNA_S-ischiensis_contig9.20707.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3137bp|location=Sequence derived from alignment at S-ischiensis_contig9:2725033..2728169+ (Schizocladia ischiensis KU_0333)
AGCCCCATGGTGGTTGGGCTGTGGCCGGAGGATATCATGGAGCGCGTGCA
GACGGCGGAGGTGGGTCTGTTCTCGCGTTTGTGATGTGATGTGATGCGAT
GCGATGTGATGTGATGCGATGCGATGTGATGTGATGTGATGTGTGTCAAG
TTTCGCGCGTGACGTAACGTACGCCGTGGCGCACGATCGTGTCATCGGGT
GGCGATGTGATGTCATGTGATGTCATGTGATTCGAGGTCATGCGATGCGA
CCACAGCGTGTTCTTCCCCCCCCCACCACTCCGTGGATCGCTGACCGACC
CATCCCCAGACACCCCCAAACAAACAAACACACACGCACGCACACATACA
CACACGACAGGACGCTTGCATTTCATCCCCCCCGTTTCCCCGTGCCCGCT
TGCCTACTTACGCGCCACCCACCCATCCACCGACCCACCCACCCATCCCA
TGCGGACACTTCCCACGTTTCACCGCCCGCATCGCCCGCCGCACGCACTT
TTGCAACGCACACGCCCACGGCACGTGTACACGAATGCACGCACGCATGC
ACGCACCCCCTTTGACTTTGCAGCGGGCCGGGACACCCCCCACCGCCCCG
TCCTTCCCGAGGGTGGGCACCTCCAAGGCGGCCGGCGTGAACGGCCCGCG
CGTCCACGAGCTGTGCGCGTTGAACATGTTCACGCACTTCTTCAACCACT
GCAAGGCGAGTGAAATATTATCGACCGGCGGTCGTTGTCTTCCGTAGTTT
ACGGTACCGTGGCAGTATCACCACCGCGGTGGGTCGAGGTTTGTGTTTTG
GTCCGGGCCCCATTTCATCAATCAAATAGGTAACTACAGTGGTTCGAGTA
CTTACATAGAGTACAGTAGGTGGTACTAGCTAGTTCCTTCGGCCTTTAGG
AGAAACAACTGAGTATGCTCTTCCCTAATGTTTCGTTCAACTCACCAAAT
AATTGGCCGCTTCTTCTGAAGGTATCACGTCAACACCTTGTACCTCAGCC
TTCAGAACAAATCTCAAGTTGAAGGTCAGCATGTTGAAGTTGAAGGCTTT
TCGGAACTTACGGTGGCCCCGACTGTAGTAGCCATGAACATGTTCACACA
CTTCTTCAACCGCTGCGAGGGTGCCGGGACTCGTCGATCGACGGCTCTGC
TGATGTCGAGCGCAGGGTTGGCACTTACTGTAGATGTTATTTGGGGCCTA
GTAGCCTTCATTTGAGGTCTTAGTCCCCCTATTTGCCTCTGATGAAGGGC
CTAAGAGGGCACCACTTGGGGGGTTAGTGCCAACCCTGGTCGAGTGGGTG
GGGCGGGGGTGTCGGTCGGTCGGTCTATGGGTGGACCACCCAAGCCGGAA
GCAAGGAGCCTCTTGGATGTCGTCTTGTCCTGGGGAAGGGCCTCTCGCCC
CGTCGTCGCTGCGGGTGGCGAAGCGTAGGTACTGTACCGTGCCGTACTGC
ACTGTACTGCAACGCACGAGTACTGTGTACTGTGCTGCGCAACTGCAATC
TAGCCTTCAATCCCCCGTCGCCATGTCAGGCGGCAACGAAGTACTACTGT
ACCGTACAGTATATTGAGCTACTGTACTGTACTGTACAGTAGTGGAAGTA
CCGCGCCTCGAGCGCTTCTGTCAAGCTACAATCGGTGTTGCTTTGCAGTG
CGAGGGAGTCATCGTCGAGCACCTGTACTCGAGTACGTAGATACCAACAA
CTGACCCCCCCTCTCTGCCCCACGCGCCACCAGGCCCACCTCCAGCTGCG
CATCCAGGCAGTGGAGGAGGCGATACACCTTTCCGGCATACGCACCCTCC
CCCTAGGCTCCGACCGCCACCACCGCCGCTACCTCCGGGTGTCCGGGGAC
CCCCACCGCATCTACGTCCTCCCGCCGCCAAAGAGCGAGGATGACCAGGA
GGGGGACGGGGGCGCCGCCGGTGGGGGTGCACCCACCGGCGGCCCCCGGG
GGGCTGGCATTGCGGCCGCTGCCCCTCGCGCCGCCATCGCCGCAGCCGCA
GAAGCTTCCGGCAATTCCTCTCCGACCCCTCCTCCTGGCGTGGCTGTGTG
CGTCGAGGTGCGGGTGGGGAAGGCGTCTGTTTTGTTTGTTTGTTGCGGGG
CTAGGCCCGGGGGCAGGCGCAGCTGCGACCCTGGCCCGTGTCGGCAGAAA
TACTGTATCGACAGTTACATACTCTATCAACAGTTACGTACTGTATCGAC
AGTTGCATACTGTATCATCACGTACTGTACCGACAGTCACATACTGTACC
GACAGTCACATACTGTATCGACAGTTACAGTTGCGACACACATCGCCGTA
GTGGTGTGCCGAAAACACTGTGAGGGACACTCAGTGCGACACATGCGAGA
TTGCATATACTTCCAAGTACTCTACCGCATATGCCTCGTTGCAGTTTATT
CGAGTCACGCGCGGGTGCAAACACTCGTGACTTACAGCGCAGGAGGCCGC
CCCGATAGAGTATTTTAAGGAATGACACGGGGCGAGGTGCGGGCCACGTC
ACTAGAGACCTCAACAATGAACCTTCCTTAGCTTGCCAGGGGAAAGTTGT
GTGGGGAAGGGGGGGTGGACGGGGAGGAAGAGGGGGAGGAGGAGGAGGAG
GGGGAGGGGTGGGGGGCAGACGAGGGAGAGGGATGGGACAGGGTGCATGT
GTGCACCCAGAGGGGGCGAGGTAGGCGACGGTGCGGCAGGCTGTGACAGA
GTAGGCAGAACCACCACACCGCGTACCTGTAGCTGAGAAATGAACAGGGA
ACACCGAGTGAGCGCGGGACCCCTGTACCGCAATCACCAAGCACCGTGCT
GACACCAGTGAAACGCGTCTACGCAACCGCACAACGGTGTGGCCAACACC
AGAAGGCTCAGTCCCGATAGACTCGTACTCGTACATTCTACTCTACTCCA
ACATACTGCGCAAGCATGTGCCAATCACAAGCGCCTGCTCCACCAATACA
GGAGGGGACGGAGGTAGCGGTGGCAGCGGCGGCGCCGGCGGAGGGGGAGG
GACCACGCGTCCCGCGGGAGAAGGGCGGGGATTGCATGGTTTACCAGACG
CTCGAGGGCCTGCGATCGCTGGTGGGCTGGCTCAGCGAGTCCGGGGTGCG
CGAGGGGCCGCTGCGGGCGACCATCATAGATGCCTTC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig9:2725033..2728169+ >mRNA_S-ischiensis_contig9.20707.1 ID=mRNA_S-ischiensis_contig9.20707.1|Name=mRNA_S-ischiensis_contig9.20707.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1392bp|location=Sequence derived from alignment at S-ischiensis_contig9:2725033..2728169+ (Schizocladia ischiensis KU_0333)
ATGGTGGTTGGGCTGTGGCCGGAGGATATCATGGAGCGCGTGCAGACGGC
GGAGATGGTGGTTGGGCTGTGGCCGGAGGATATCATGGAGCGCGTGCAGA
CGGCGGAGCGGGCCGGGACACCCCCCACCGCCCCGTCCTTCCCGAGGGTG
GGCACCTCCAAGGCGGCCGGCGTGAACGGCCCGCGCGTCCACGAGCTGTG
CGCGTTGAACATGTTCACGCACTTCTTCAACCACTGCAAGCGGGCCGGGA
CACCCCCCACCGCCCCGTCCTTCCCGAGGGTGGGCACCTCCAAGGCGGCC
GGCGTGAACGGCCCGCGCGTCCACGAGCTGTGCGCGTTGAACATGTTCAC
GCACTTCTTCAACCACTGCAAGGCCCACCTCCAGCTGCGCATCCAGGCAG
TGGAGGAGGCGATACACCTTTCCGGCATACGCACCCTCCCCCTAGGCTCC
GACCGCCACCACCGCCGCTACCTCCGGGTGTCCGGGGACCCCCACCGCAT
CTACGTCCTCCCGCCGCCAAAGAGCGAGGATGACCAGGAGGGGGACGGGG
GCGCCGCCGGTGGGGGTGCACCCACCGGCGGCCCCCGGGGGGCTGGCATT
GCGGCCGCTGCCCCTCGCGCCGCCATCGCCGCAGCCGCAGAAGCTTCCGG
CAATTCCTCTCCGACCCCTCCTCCTGGCGTGGCTGTGTGCGTCGAGGCCC
ACCTCCAGCTGCGCATCCAGGCAGTGGAGGAGGCGATACACCTTTCCGGC
ATACGCACCCTCCCCCTAGGCTCCGACCGCCACCACCGCCGCTACCTCCG
GGTGTCCGGGGACCCCCACCGCATCTACGTCCTCCCGCCGCCAAAGAGCG
AGGATGACCAGGAGGGGGACGGGGGCGCCGCCGGTGGGGGTGCACCCACC
GGCGGCCCCCGGGGGGCTGGCATTGCGGCCGCTGCCCCTCGCGCCGCCAT
CGCCGCAGCCGCAGAAGCTTCCGGCAATTCCTCTCCGACCCCTCCTCCTG
GCGTGGCTGTGTGCGTCGAGGAGGGGACGGAGGTAGCGGTGGCAGCGGCG
GCGCCGGCGGAGGGGGAGGGACCACGCGTCCCGCGGGAGAAGGGCGGGGA
TTGCATGGTTTACCAGACGCTCGAGGGCCTGCGATCGCTGGTGGGCTGGC
TCAGCGAGTCCGGGGTGCGCGAGGGGCCGCTGCGGGCGACCATCATAGAT
GCCTTCGAGGGGACGGAGGTAGCGGTGGCAGCGGCGGCGCCGGCGGAGGG
GGAGGGACCACGCGTCCCGCGGGAGAAGGGCGGGGATTGCATGGTTTACC
AGACGCTCGAGGGCCTGCGATCGCTGGTGGGCTGGCTCAGCGAGTCCGGG
GTGCGCGAGGGGCCGCTGCGGGCGACCATCATAGATGCCTTC back to top
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