mRNA_S-ischiensis_contig9.20691.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20691.1
Unique NamemRNA_S-ischiensis_contig9.20691.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20691.1 vs. uniprot
Match: D7FT24_ECTSI (Similar to ataxia telangiectasia and Rad3 related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT24_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.320e-24
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 EVERGMLQALGEMGHLESLVHQAAGMLGLPSKHHLAPALLPMAVEASWRLQRWPLLKDLL 180
            EVERGML AL E+GHLE L+HQA+GML +PSKHHLAP LLP+AVEASWRLQRWPLL+DLL
Sbjct: 1109 EVERGMLNALVELGHLEMLLHQASGMLSVPSKHHLAPLLLPVAVEASWRLQRWPLLQDLL 1168
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BLAST of mRNA_S-ischiensis_contig9.20691.1 vs. uniprot
Match: A0A482R372_9EURY (FAT domain-containing protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R372_9EURY)

HSP 1 Score: 56.6 bits (135), Expect = 1.790e-7
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   13 GMLQALGEMGHLESLVHQAAGMLGLPSKHHLAPALLPMAVEASWRLQRWPLLKDLL-VSCDETLP 204
            G+L+ L  +GHLE+++++A G+LG   +  L+PA+ P AVEA+WRL +W  L++LL    DE LP
Sbjct:   66 GLLRCLQNVGHLETVLNRAVGVLGRSPE--LSPAVTPYAVEAAWRLGQWQPLEELLSFQVDEPLP 128
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BLAST of mRNA_S-ischiensis_contig9.20691.1 vs. uniprot
Match: A0A7S2AXC9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AXC9_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.560e-5
Identity = 25/66 (37.88%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    4 VERGMLQALGEMGHLESLVHQAAGMLGLPSKH-------HLAPALLPMAVEASWRLQRWPLLKDLL 180
            ++ G+L +L  +GH +S+++Q  GML L +         +L   L P+A+ ASWRLQRW + +DL+
Sbjct:  113 LQHGLLHSLLALGHFDSVLNQYNGMLLLNNNSSSRTNAGNLGSLLSPLAIAASWRLQRWDITRDLV 178
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FT24_ECTSI2.320e-2481.67Similar to ataxia telangiectasia and Rad3 related ... [more]
A0A482R372_9EURY1.790e-746.15FAT domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A7S2AXC9_9STRA2.560e-537.88Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2660592..2661384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue4.3e-17
Seed eggNOG ortholog2880.D7FT24
KEGG koko:K06640
KEGG Pathwayko03460,ko04110,ko04115,ko04214,ko04218,ko05165,ko05166,map03460,map04110,map04115,map04214,map04218,map05165,map05166
KEGG ModuleM00691
GOsGO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0033554,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0890@2759
EC2.7.11.1
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20691.1prot_S-ischiensis_contig9.20691.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2660607..2661384 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817396.154968-UTR-S-ischiensis_contig9:2660591..26606061622817396.154968-UTR-S-ischiensis_contig9:2660591..2660606Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2660592..2660606 +
1695741082.8136592-UTR-S-ischiensis_contig9:2660591..26606061695741082.8136592-UTR-S-ischiensis_contig9:2660591..2660606Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2660592..2660606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817396.1719067-CDS-S-ischiensis_contig9:2660606..26606571622817396.1719067-CDS-S-ischiensis_contig9:2660606..2660657Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2660607..2660657 +
1695741082.8255475-CDS-S-ischiensis_contig9:2660606..26606571695741082.8255475-CDS-S-ischiensis_contig9:2660606..2660657Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2660607..2660657 +
1622817396.184197-CDS-S-ischiensis_contig9:2661204..26613841622817396.184197-CDS-S-ischiensis_contig9:2661204..2661384Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2661205..2661384 +
1695741082.8356535-CDS-S-ischiensis_contig9:2661204..26613841695741082.8356535-CDS-S-ischiensis_contig9:2661204..2661384Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2661205..2661384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20691.1

>prot_S-ischiensis_contig9.20691.1 ID=prot_S-ischiensis_contig9.20691.1|Name=mRNA_S-ischiensis_contig9.20691.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=77bp
MLQALGEMGHLESLVHQAAGMLGLPSKHHLAPALLPMAVEASWRLQRWPL
LKDLLVSCDETLPSPHASPRAGAARPP
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mRNA from alignment at S-ischiensis_contig9:2660592..2661384+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20691.1 ID=mRNA_S-ischiensis_contig9.20691.1|Name=mRNA_S-ischiensis_contig9.20691.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=793bp|location=Sequence derived from alignment at S-ischiensis_contig9:2660592..2661384+ (Schizocladia ischiensis KU_0333)
GAGGTGGAGCGCGGGATGTTGCAGGCGCTGGGGGAGATGGGGCATCTGGA
ATCGTTGGTGCACCAGGTGCGGACCAGGTTTTTTTTTTGTGTGTTCGAAA
TTGTGCCTTTCCTCCGGGCCGTGAAGTACTTTTTAGGCTGCGTCACCCCC
CCTCTCCCTTCCCCCCTCCCGCTGCTGTTTGCGGCGCGGATGAGCAAACG
GCTACCGTATGTACTCTACCACTGTCTCGCACTCAGTGTCCCCCACTCTC
TGTTTGCCGCCGCCCCCGCCCCCCTCCCTCCCATACCACGTGCGCCTGCC
TACTGGGAAAACGCCCGTCACGGACCTGCGCGGCCGATGACACGGCGGCG
GGGCGGCCGCTCTCTTTTCCCTTTCTCCCCCCTCTTTTTCTTCCCCCCCC
CCTCCTTGTCCTTAGTTCCTTAATGTGATGATCACTACGTAGTATAAGAA
CACTCAAGTCTTGTGTAAGAAGAAAAGAAGCGAGTGGAAATAGAGGTCAT
CCCAATTCTTAAATGGGACACTACTGTACTAGTACGAGAACAGCCAATGT
CACACACGCGCGCAATGTTTCTCGTTACAATTTATGTGAATCACGGCCGC
GCCGCCCATGCAGGCCGCCGGCATGCTGGGCCTCCCCAGCAAGCACCACC
TGGCCCCTGCGCTCCTCCCCATGGCCGTCGAGGCCTCCTGGAGGCTGCAG
CGCTGGCCCCTGCTCAAGGACCTGCTGGTGAGCTGCGACGAGACCCTGCC
TTCCCCGCACGCCTCCCCCCGAGCGGGCGCGGCCCGGCCTCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2660592..2661384+

>mRNA_S-ischiensis_contig9.20691.1 ID=mRNA_S-ischiensis_contig9.20691.1|Name=mRNA_S-ischiensis_contig9.20691.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=462bp|location=Sequence derived from alignment at S-ischiensis_contig9:2660592..2661384+ (Schizocladia ischiensis KU_0333)
ATGTTGCAGGCGCTGGGGGAGATGGGGCATCTGGAATCGTTGGTGCACCA
GATGTTGCAGGCGCTGGGGGAGATGGGGCATCTGGAATCGTTGGTGCACC
AGGCCGCCGGCATGCTGGGCCTCCCCAGCAAGCACCACCTGGCCCCTGCG
CTCCTCCCCATGGCCGTCGAGGCCTCCTGGAGGCTGCAGCGCTGGCCCCT
GCTCAAGGACCTGCTGGTGAGCTGCGACGAGACCCTGCCTTCCCCGCACG
CCTCCCCCCGAGCGGGCGCGGCCCGGCCTCCCGCCGCCGGCATGCTGGGC
CTCCCCAGCAAGCACCACCTGGCCCCTGCGCTCCTCCCCATGGCCGTCGA
GGCCTCCTGGAGGCTGCAGCGCTGGCCCCTGCTCAAGGACCTGCTGGTGA
GCTGCGACGAGACCCTGCCTTCCCCGCACGCCTCCCCCCGAGCGGGCGCG
GCCCGGCCTCCC
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