mRNA_S-ischiensis_contig9.20673.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20673.1 vs. uniprot
Match: A0A6H5JJC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC9_9PHAE) HSP 1 Score: 382 bits (982), Expect = 5.430e-114 Identity = 204/511 (39.92%), Postives = 317/511 (62.04%), Query Frame = 1
Query: 1 EGAGQYCVREDYTDATCAVSADPGRETAGGASAAQLPYLDLVATVPWLGYLNYTPPVYTANDAVLNIHGWARISGDNEWDMSGTDSSGTNAYVMGLMYTAIPVWVIGCLVACCCVPVGYIAAGSREHHLDGEGYCGTVCPRRCKQGNYRGSGAMAVMMVGALLTFAGGAITIYGINAADTNVSNTFHEVASMGEDMLQSQNGVVVIHNSVIDLEQSVTQLQSCETFGDAANQALDDISGSEQRLQDFLDQD-LGGVGQSVIYVNEDVADTELTRRTVIYVAAGMVMLMNIVYVSSAAYAISKDE---KDGYAHQRGATLTGCLLLPMTLTVILASWFLLGFSTAVGLFAADFCVDPRYNLPLAFTDANDRETIQYYTTCEGPNKYVDILEDAYVQAAAARGALLSVDVEAFQRTCPFQNVSVLDGMAFDLDQIVEEIDNIGYLVTCENINRYYIVGVEQEICGEATENMWYILVGFTLLATSLAATVISFRLMLQQKEEGIK--LLEDGLA 1515
EG +YCV +D CA ADP E A G QLP D + W +Y P YT + V +HGW R+SGDNE+D+S D YV+G++ A+PV+V G +VACCC+PVG++AA S++HHLDG G+ G +CP RCK+G++ GSG + V++ ++T GGA+ IYG+ + D V N + +G+ M ++Q GV I+ ++++E S ++ SC I ++ +++ ++ D LG V +++ + E+ ++T+ TRR V+Y A +V++M++VYVS YA+ KD+ KDG A RG L GCL+LP+TL VIL WFL G ST+V L +DFCVDP + AF+ A D+E + YYT+CEG N + D L AY+Q +AA+G L ++D + F CP V + + ++ I+ +ID++GYLV C ++N +++ GVE+ +C +A + +W+++ GF +++ L +SFRL+LQQKEEG+ + ED +A
Sbjct: 538 EGGSEYCVAT--SDGVCADVADPVTEVADG----QLP--DFLVR-EWEED-DYVRPDYTLSSTVQTLHGWVRVSGDNEFDLSERD------YVIGIILAAVPVFVFGFIVACCCLPVGHVAASSKQHHLDGGGFFGCLCPARCKRGDFMGSGTLGVVVFFTIVTIIGGAVAIYGVQSVDGEVVNLVSSLEDIGQAMGEAQTGVDSIYTLLVNVESSFEEVSSCSLVSSLEGVEAG-IESAKLAVEELIEDDQLGSVSTNILELEEEFSNTQTTRRGVVYAAGALVLVMSVVYVSVGFYALGKDDGRGKDGGARMRGPVLIGCLILPLTLLVILLCWFLFGVSTSVALLTSDFCVDPSGHATEAFSKAADQELVAYYTSCEGANTFSDQLVTAYLQGSAAQGLLDALDDDEFATECP-DEVESKETLDENIVLILAQIDSLGYLVQCGSVNPFFVEGVEKALCTDAPDAIWFVICGFAVVSVGLFVVAVSFRLLLQQKEEGLYKVIFEDEIA 1030
BLAST of mRNA_S-ischiensis_contig9.20673.1 vs. uniprot
Match: D7FR15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR15_ECTSI) HSP 1 Score: 371 bits (953), Expect = 4.120e-113 Identity = 198/501 (39.52%), Postives = 307/501 (61.28%), Query Frame = 1
Query: 1 EGAGQYCVREDYTDATCAVSADPGRETAGGASAAQLPYLDLVATVPWLGYLNYTPPVYTANDAVLNIHGWARISGDNEWDMSGTDSSGTNAYVMGLMYTAIPVWVIGCLVACCCVPVGYIAAGSREHHLDGEGYCGTVCPRRCKQGNYRGSGAMAVMMVGALLTFAGGAITIYGINAADTNVSNTFHEVASMGEDMLQSQNGVVVIHNSVIDLEQSVTQLQSCETFGDAANQALDDISGSEQRLQDFLDQD-LGGVGQSVIYVNEDVADTELTRRTVIYVAAGMVMLMNIVYVSSAAYAISKDE---KDGYAHQRGATLTGCLLLPMTLTVILASWFLLGFSTAVGLFAADFCVDPRYNLPLAFTDANDRETIQYYTTCEGPNKYVDILEDAYVQAAAARGALLSVDVEAFQRTCPFQNVSVLDGMAFDLDQIVEEIDNIGYLVTCENINRYYIVGVEQEICGEATENMWYILVGFTLLATSLAATVISFRLMLQQKEEGI 1491
EG +YCV +D CA ADP E A G QLP D + W +Y P YT + V +HGW R+SGDNE+D+S D YV+G++ A+PV++ G +VACCC+PVG++AA S++HHLDG G+ G CP RCK+G++ GSG + V++ ++T GGA IYG+ + D + N + +G+ M ++Q GV I+ + ++E S ++ SC I ++ +++ ++ D LG V +++ + E+ ++T+ TRR V+Y A +V++M++VYVS YA+ KD+ K G A RG L GCL+LP+TL VIL WFL G ST+V L +DFCVDP + AF+ D+E + YYT+CEG N + D L AY+Q +AA+G L ++D + F CP V + + ++ I+ +ID++GYLV C ++N Y++ GVE+ +C +A + +W+++ GF +++ L +SFRL+LQQKEEG+
Sbjct: 37 EGGSEYCVAT--SDGVCADVADPVTEVADG----QLP--DFLVR-EWEED-DYVRPDYTLSSTVEALHGWVRVSGDNEFDLSERD------YVIGIILAAVPVFIFGFIVACCCLPVGHVAASSKQHHLDGGGFFGCFCPARCKRGDFMGSGTLGVVVFFTIVTIIGGAAAIYGVRSVDGQLVNLVSSLEDIGQAMGEAQTGVDSIYTLLTNVELSFEEVSSCSLVSSLEGVEAG-IESAKLAVEELIEDDQLGSVSTNILELEEEFSNTQTTRRGVVYAAGALVLVMSVVYVSVGYYALGKDDGRGKAGGARMRGPVLIGCLILPLTLLVILLCWFLFGVSTSVALLTSDFCVDPSGHATEAFSKPADQELVAYYTSCEGANTFSDQLVTAYLQGSAAQGLLDALDDDEFATECP-DEVESKETLDENIVLILAQIDSLGYLVQCGSVNPYFVEGVEEALCTDAPDAIWFVICGFAVVSVGLFVVAVSFRLLLQQKEEGL 519
BLAST of mRNA_S-ischiensis_contig9.20673.1 vs. uniprot
Match: A0A6H5L0W0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0W0_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 7.360e-14 Identity = 106/469 (22.60%), Postives = 181/469 (38.59%), Query Frame = 1
Query: 154 NYTPPVYTANDAVLNIHGWARISGDNEWDMSGTDSSGTNAYVMGLMYTAIPVWVIGCLVACCCVPVGYIAAGSREHHLDGEGYCGTVCPRRCKQGNYRGSGAMAVMMVGALLTFAGGAITIYGINAADTNVSNTFHEVASMGEDMLQSQNGVVVIHNSVIDLEQSVTQLQSCETFGDAANQA-----------LDDISGSEQ-RLQDFLDQDLGGVGQSVIYVNEDVADTELTRRTVIYVAAGMVMLMNIVYVSSAAYAISKDEKDGYAHQRGATLTGCLLLPMTLTVILASWFLLGFSTAVGLFAADFCVDPRYNLPLAFTDANDRET---IQYYT-TCEGPNKYVDILEDAYVQAAAARGALLSVDVEAFQRTCPFQNVSVLDGMAFDLDQIVEEIDN-----------IGYLVTCENINRYYIVGVEQEICGEATENMWYILVGFTLLATSLAATVISFRLMLQQK 1479
+Y P +T +V H +N++D+ Y GL+ I V G L SR+ L G KQ +Y G+ M + V A+ + AG I+G+ AD+ ++N +M DML N + +++ + L+Q ++ + D + ++ ++ S Q + D + + G + V +++ V+DTE R+ +++ + ++ +V A ++S E + + R C + P T+ V + W + ++ DFC+DP N TD D E I YYT C N VD + A V V Q P + L+ DL + V+ +DN G L +CEN+N Y V E+C + + V L L I + ML+Q+
Sbjct: 22 DYEPATFTPGPSVEANHDLLDGLRENDFDVEDAQ------YSAGLVTLIIVFLVAGLLXXXXXXXXXXXLGTSRQERLRERMKFG-------KQTHYGGNILMVLASVAAIASAAG---AIWGLQRADSGLTNIEDATQNMATDMLTILN---LANDTSVALDQVTASYEALQESVDGCDNGAILSSLLDAFDINSLTASVQAEIDDVSEDNFGELADDVQAISDAVSDTEGARKGLLWPVLILSLMFTAFFV---AVSVSTYECVAFGY-RDCAPASCCINPCTIFVAVVIWICAALAVSLSALTGDFCIDPDANANELITDNTDGEIADLITYYTGDCTSENAAVDAIITAQ-----------EVAVPIIQSVVP--TLYQLEAACSDLAEPVQTLDNSLESFWTILEDAGELSSCENLNGLYQAAVYDELCKGLPQGLLGFWVSCAFLTVLLLILAIQWGRMLRQQ 454 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20673.1 >prot_S-ischiensis_contig9.20673.1 ID=prot_S-ischiensis_contig9.20673.1|Name=mRNA_S-ischiensis_contig9.20673.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=598bp EGAGQYCVREDYTDATCAVSADPGRETAGGASAAQLPYLDLVATVPWLGYback to top mRNA from alignment at S-ischiensis_contig9:2509651..2522492- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20673.1 ID=mRNA_S-ischiensis_contig9.20673.1|Name=mRNA_S-ischiensis_contig9.20673.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=12842bp|location=Sequence derived from alignment at S-ischiensis_contig9:2509651..2522492- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:2509651..2522492- >mRNA_S-ischiensis_contig9.20673.1 ID=mRNA_S-ischiensis_contig9.20673.1|Name=mRNA_S-ischiensis_contig9.20673.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3588bp|location=Sequence derived from alignment at S-ischiensis_contig9:2509651..2522492- (Schizocladia ischiensis KU_0333)back to top |