mRNA_S-ischiensis_contig9.20672.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20672.1
Unique NamemRNA_S-ischiensis_contig9.20672.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2508587..2509293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20672.1prot_S-ischiensis_contig9.20672.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2508587..2509265 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.5821006-CDS-S-ischiensis_contig9:2508586..25087451622817367.5821006-CDS-S-ischiensis_contig9:2508586..2508745Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2508587..2508745 -
1695741061.0095718-CDS-S-ischiensis_contig9:2508586..25087451695741061.0095718-CDS-S-ischiensis_contig9:2508586..2508745Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2508587..2508745 -
1622817367.5967069-CDS-S-ischiensis_contig9:2509178..25092651622817367.5967069-CDS-S-ischiensis_contig9:2509178..2509265Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2509179..2509265 -
1695741061.0216498-CDS-S-ischiensis_contig9:2509178..25092651695741061.0216498-CDS-S-ischiensis_contig9:2509178..2509265Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2509179..2509265 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.6164114-UTR-S-ischiensis_contig9:2509265..25092931622817367.6164114-UTR-S-ischiensis_contig9:2509265..2509293Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2509266..2509293 -
1695741061.0314097-UTR-S-ischiensis_contig9:2509265..25092931695741061.0314097-UTR-S-ischiensis_contig9:2509265..2509293Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2509266..2509293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20672.1

>prot_S-ischiensis_contig9.20672.1 ID=prot_S-ischiensis_contig9.20672.1|Name=mRNA_S-ischiensis_contig9.20672.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=82bp
MSVDASAAAAAAVAGAGAGHGGRPSGDFEGRAGDQHRSRSNTSIDPQGRR
LSRTASMREAYQNTRRSSVHRFYIMAGVDDPN
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mRNA from alignment at S-ischiensis_contig9:2508587..2509293-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20672.1 ID=mRNA_S-ischiensis_contig9.20672.1|Name=mRNA_S-ischiensis_contig9.20672.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=707bp|location=Sequence derived from alignment at S-ischiensis_contig9:2508587..2509293- (Schizocladia ischiensis KU_0333)
GCAGGCCAGGTTTGACGCGAAGCGGGCTATGTCGGTCGACGCGTCGGCGG
CAGCCGCGGCTGCTGTCGCTGGGGCTGGGGCTGGGCATGGGGGCAGGCCG
TCTGGTGACTTTGAGGTGTGTGTGTGTGTGTGTGTGGTGCACGTGTGCAT
ACTCTACACGAGTACCTGCTTCAACGTACTTGTTTGTGCGCATGTGGTGT
GTGTGTGTACGAGTATGTGCACAAGCATGCGCCACAACTGTGGGTGAACC
CCACCGTCACGACCAGGCAGCCCCCCCCGCCCGGTTTGGGGCTTCTCAGC
TCACGAGTACCATCCCACCCCCCCGGTTGTCGGCCAGTCACACGCTCCAC
CATCCCACCTCGACCAATCAGTGGGCAGAACCGACCGTCACGACCCGTCA
GTCCCCCCCCGCCTCGTGTTCAGCTACTCATCTCACGAGAACCCCCTTCC
CTCCCCCCCCCCCCCCCCCCCCGCCTCATGTTGAGCTACTGATCTCACGA
GAACTCCCTTCACTCCCCCTCCCCCCCCCCCCCCCCCACCCGCTCCAGGG
ACGCGCCGGAGACCAGCACCGGTCGCGCTCTAACACCTCTATCGACCCCC
AGGGCCGGCGCCTCTCACGGACCGCCTCCATGCGCGAGGCCTACCAGAAC
ACGCGCCGGTCTTCCGTGCACCGCTTCTACATCATGGCGGGCGTCGACGA
CCCGAAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2508587..2509293-

>mRNA_S-ischiensis_contig9.20672.1 ID=mRNA_S-ischiensis_contig9.20672.1|Name=mRNA_S-ischiensis_contig9.20672.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=492bp|location=Sequence derived from alignment at S-ischiensis_contig9:2508587..2509293- (Schizocladia ischiensis KU_0333)
ATGTCGGTCGACGCGTCGGCGGCAGCCGCGGCTGCTGTCGCTGGGGCTGG
GGCTGGGCATGGGGGCAGGCCGTCTGGTGACTTTGAGATGTCGGTCGACG
CGTCGGCGGCAGCCGCGGCTGCTGTCGCTGGGGCTGGGGCTGGGCATGGG
GGCAGGCCGTCTGGTGACTTTGAGGGACGCGCCGGAGACCAGCACCGGTC
GCGCTCTAACACCTCTATCGACCCCCAGGGCCGGCGCCTCTCACGGACCG
CCTCCATGCGCGAGGCCTACCAGAACACGCGCCGGTCTTCCGTGCACCGC
TTCTACATCATGGCGGGCGTCGACGACCCGAACGGACGCGCCGGAGACCA
GCACCGGTCGCGCTCTAACACCTCTATCGACCCCCAGGGCCGGCGCCTCT
CACGGACCGCCTCCATGCGCGAGGCCTACCAGAACACGCGCCGGTCTTCC
GTGCACCGCTTCTACATCATGGCGGGCGTCGACGACCCGAAC
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