mRNA_S-ischiensis_contig9.20670.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20670.1
Unique NamemRNA_S-ischiensis_contig9.20670.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2444603..2445312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size293
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.5368228-CDS-S-ischiensis_contig9:2444602..24446951622817367.5368228-CDS-S-ischiensis_contig9:2444602..2444695Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2444603..2444695 -
1695741060.9866993-CDS-S-ischiensis_contig9:2444602..24446951695741060.9866993-CDS-S-ischiensis_contig9:2444602..2444695Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2444603..2444695 -
1622817367.5506516-CDS-S-ischiensis_contig9:2445114..24453121622817367.5506516-CDS-S-ischiensis_contig9:2445114..2445312Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2445115..2445312 -
1695741060.998362-CDS-S-ischiensis_contig9:2445114..24453121695741060.998362-CDS-S-ischiensis_contig9:2445114..2445312Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2445115..2445312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20670.1prot_S-ischiensis_contig9.20670.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2444603..2445312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20670.1

>prot_S-ischiensis_contig9.20670.1 ID=prot_S-ischiensis_contig9.20670.1|Name=mRNA_S-ischiensis_contig9.20670.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=97bp
PRASSSATFAGDGSQAPSEGGCSALRPEDSLIERATPTARPDTRVRNHNM
LGQTRARPEVDFGRLEPRVLWNYISHHDIPAVEVHASKDELVNICSR
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mRNA from alignment at S-ischiensis_contig9:2444603..2445312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20670.1 ID=mRNA_S-ischiensis_contig9.20670.1|Name=mRNA_S-ischiensis_contig9.20670.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=710bp|location=Sequence derived from alignment at S-ischiensis_contig9:2444603..2445312- (Schizocladia ischiensis KU_0333)
CCCAGGGCATCCAGCAGCGCAACCTTCGCAGGGGACGGGTCTCAGGCACC
ATCTGAGGGAGGGTGCAGCGCGCTGCGCCCGGAGGACTCCTTGATCGAGA
GGGCGACACCCACCGCGCGACCGGACACGCGAGTGCGAAACCATAACATG
TTAGGACAGACACGAGCACGCCCCGAGGTGGATTTTGGGCGTTTGGAGGT
AGGTTCCGCTTGTCGATCTGCCGTGGATCTGTCTCCGCTGTCGTGCGTGC
TTTTTGCGGTGAAGTGGGCGGGCCAGCTGCAGTTGCCGGGAGCGGGTCCA
CCCAGCGCCGAGCGACGCGCGTGCTGTCGGGCGACCCGCTGTTGGCTAGG
ACACGTGGTCGCAGCTACCTAAGCCTAGCGTAACGGGGCCAACGACTCTG
GCTTGGCATGATATCTTCCTTGGTGCGCCGGGAGGTGCTCCGCAGCGTCG
GTGGGGTACTCCGTGACCGCGCGCGGAGCACGTTCGTAGCGCTACGCGGA
TCGAGACCGCCACTCGAATGCGTTTCCATCGCCCCAACTCTGAGGATACC
AACCTTTCACCCGCTCATGGCCACGCCACCCCTCACGACTGCTTGGAACC
CGCGTCGCCCACCTCAGCCTCGGGTCCTGTGGAATTACATCAGCCACCAT
GACATCCCGGCTGTCGAGGTCCACGCGTCCAAGGATGAGCTTGTCAACAT
CTGCTCCAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2444603..2445312-

>mRNA_S-ischiensis_contig9.20670.1 ID=mRNA_S-ischiensis_contig9.20670.1|Name=mRNA_S-ischiensis_contig9.20670.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=582bp|location=Sequence derived from alignment at S-ischiensis_contig9:2444603..2445312- (Schizocladia ischiensis KU_0333)
CCCAGGGCATCCAGCAGCGCAACCTTCGCAGGGGACGGGTCTCAGGCACC
ATCTGAGGGAGGGTGCAGCGCGCTGCGCCCGGAGGACTCCTTGATCGAGA
GGGCGACACCCACCGCGCGACCGGACACGCGAGTGCGAAACCATAACATG
TTAGGACAGACACGAGCACGCCCCGAGGTGGATTTTGGGCGTTTGGAGCC
CAGGGCATCCAGCAGCGCAACCTTCGCAGGGGACGGGTCTCAGGCACCAT
CTGAGGGAGGGTGCAGCGCGCTGCGCCCGGAGGACTCCTTGATCGAGAGG
GCGACACCCACCGCGCGACCGGACACGCGAGTGCGAAACCATAACATGTT
AGGACAGACACGAGCACGCCCCGAGGTGGATTTTGGGCGTTTGGAGCCTC
GGGTCCTGTGGAATTACATCAGCCACCATGACATCCCGGCTGTCGAGGTC
CACGCGTCCAAGGATGAGCTTGTCAACATCTGCTCCAGGCCTCGGGTCCT
GTGGAATTACATCAGCCACCATGACATCCCGGCTGTCGAGGTCCACGCGT
CCAAGGATGAGCTTGTCAACATCTGCTCCAGG
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