mRNA_S-ischiensis_contig9.20658.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20658.1 vs. uniprot
Match: A0A2I6U1M4_SACJA (Tic20-like protein n=15 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1M4_SACJA) HSP 1 Score: 187 bits (475), Expect = 2.560e-49 Identity = 115/228 (50.44%), Postives = 151/228 (66.23%), Query Frame = 1
Query: 337 SSPVDV---QAERLREQASQLRAEAAALQSQMNEERQGAALRSFNTFDSNGDGQVDVVGLRTGLERALRRDFVKRLKARMGGVPPTARQVEAKIAEMPGGRLLPEEPLRQLLEAYDKNGDGVLQPEEFARTEAI-------FQKQREEKRLSRVAEWEKTRAEKEKAAKVEMARSLGVALPED-FNDGAPTALDKAVSGLPYLLPLLDGLVFAGHLFSAYPEQFAWAQ 987
SS V+V +A RLRE A+ RA+AA L+ + +ERQ A RSFN+FDSN DG VD+V L+ GLE LRR FVK+L ARMG P +++A+IA +PGG L P++ R+L++ YD+NGDG+LQ EFA TE + F+ Q+E R +RV E ++ +K A E+ G +P NDG TA DKA+S LPYLLPL+DG+ FAGHLF A+PEQ AWAQ
Sbjct: 66 SSEVEVAQEKAARLRETAAAFRAQAAELEDKRTQERQAGAERSFNSFDSNQDGAVDIVELKAGLEGPLRRSFVKQLTARMGR-KPDREEIDARIAALPGGSLFPDDLARKLIDTYDQNGDGLLQRSEFAPTEELRTRLENMFRDQQETARQARVEERQRQMEDKLAA---EVGTGAGAVVPAGGVNDGPATAADKALSALPYLLPLVDGISFAGHLFGAFPEQTAWAQ 289
BLAST of mRNA_S-ischiensis_contig9.20658.1 vs. uniprot
Match: D8LS19_ECTSI (EF-hand domain-containing protein n=7 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS19_ECTSI) HSP 1 Score: 183 bits (465), Expect = 6.550e-48 Identity = 118/244 (48.36%), Postives = 152/244 (62.30%), Query Frame = 1
Query: 283 ARFRASPTVGVSSLRMAASSPVDVQAERLREQASQLRAEAAALQSQMNEERQGAALRSFNTFDSNGDGQVDVVGLRTGLERALRRDFVKRLKARMGGVPPTARQVEAKIAEMPGGRLLPEEPLRQLLEAYDKNGDGVLQPEEFARTEAI-------FQKQREEKRLSRVAEWEKTRAEKEKAAKVEMARSLG--VALPEDFNDGAPTALDKAVSGLPYLLPLLDGLVFAGHLFSAYPEQFAWAQ 987
AR R+S T SSLRM S + +A +LRE A+ RAEAA L+ + ER+ A RSFNTFDSN DG VDV L+ GLE LRR F K L+ARMG P+ +V+ +IA +PGG L P++ +L++ YD+NGDG+LQ EFA TE + F +QREE+R++R+ ++ M G V P D NDG T DKA+S LPY+LPL DG+VFA HLF A+PEQ AWAQ
Sbjct: 54 ARRRSSATPATSSLRMV-SEVAEQRAAKLRETAAAFRAEAAELEQKQARERRENAQRSFNTFDSNKDGSVDVAELKAGLEGPLRRSFTKTLQARMGR-KPSKEEVDDRIAGLPGGTLFPDDLALKLIQTYDQNGDGLLQQSEFAPTEELRTRLENLFSQQREEERVARMEXXXXXXXDR-------MRPDAGTVVVSPGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAQ 288
BLAST of mRNA_S-ischiensis_contig9.20658.1 vs. uniprot
Match: D8LS20_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS20_ECTSI) HSP 1 Score: 179 bits (455), Expect = 1.230e-46 Identity = 117/244 (47.95%), Postives = 151/244 (61.89%), Query Frame = 1
Query: 283 ARFRASPTVGVSSLRMAASSPVDVQAERLREQASQLRAEAAALQSQMNEERQGAALRSFNTFDSNGDGQVDVVGLRTGLERALRRDFVKRLKARMGGVPPTARQVEAKIAEMPGGRLLPEEPLRQLLEAYDKNGDGVLQPEEFARTEAI-------FQKQREEKRLSRVAEWEKTRAEKEKAAKVEMARSLG--VALPEDFNDGAPTALDKAVSGLPYLLPLLDGLVFAGHLFSAYPEQFAWAQ 987
AR R+S T SSLRM S + +A +LRE A+ RAEAA L+ + ER+ A RSFNTFDSN DG VDV L+ GLE LRR F K L+ARMG P+ +V+ +IA +PGG L P++ +L++ YD+NGDG+LQ EFA TE + F +QREE+R++R+ ++ M G V P D NDG T DKA+S LPY+LPL DG+VFA HLF A+ EQ AWAQ
Sbjct: 54 ARRRSSATPATSSLRMV-SEVAEQRAAKLRETAAAFRAEAAELEQKQARERRENAQRSFNTFDSNKDGSVDVAELKAGLEGPLRRSFTKTLQARMGR-KPSKEEVDDRIAGLPGGTLFPDDLALKLIQTYDQNGDGLLQQSEFAPTEELRTRLENLFSQQREEERVARMEXXXXXXXDR-------MRPDAGTVVVSPGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFLEQTAWAQ 288
BLAST of mRNA_S-ischiensis_contig9.20658.1 vs. uniprot
Match: D7FRG5_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG5_ECTSI) HSP 1 Score: 178 bits (451), Expect = 4.370e-46 Identity = 114/241 (47.30%), Postives = 148/241 (61.41%), Query Frame = 1
Query: 292 RASPTVGVSSLRMAASSPVDVQAERLREQASQLRAEAAALQSQMNEERQGAALRSFNTFDSNGDGQVDVVGLRTGLERALRRDFVKRLKARMGGVPPTARQVEAKIAEMPGGRLLPEEPLRQLLEAYDKNGDGVLQPEEFARTEAI-------FQKQREEKRLSRVAEWEKTRAEKEKAAKVEMARSLG--VALPEDFNDGAPTALDKAVSGLPYLLPLLDGLVFAGHLFSAYPEQFAWAQ 987
R+S SSLRM S + +A +LRE A+ RAE ER+ ALRSFNTFDSN DG VD+ L+ GLE LRR F K L+ARMG P+ +V+ +IA +PGG L P+E +L++ YD+NGDG+LQ EFA TE + +QRE++RL+R+ E ++ +K M G V P D NDG T DKA+S LPYLLPL+DG++FA HLF A+PEQ AWAQ
Sbjct: 57 RSSAMPATSSLRMV-SKVAEQKAAKLRETAAAFRAEXXXXXXXXARERRENALRSFNTFDSNKDGSVDIAELKAGLESPLRRSFTKTLQARMGR-KPSKEEVDERIAGLPGGTLFPDELALKLIQTYDQNGDGLLQQSEFAPTEELRTRLENLLSQQREDERLARLEERQRQMDDK-------MRPDTGAVVVSPGDVNDGPATTADKALSALPYLLPLVDGILFAAHLFGAFPEQTAWAQ 288
BLAST of mRNA_S-ischiensis_contig9.20658.1 vs. uniprot
Match: D8LTM8_ECTSI (TIC 20 related, plastid import n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM8_ECTSI) HSP 1 Score: 167 bits (423), Expect = 7.870e-42 Identity = 98/217 (45.16%), Postives = 139/217 (64.06%), Query Frame = 1
Query: 358 AERLREQASQLRAEAAALQSQMNEERQGAALRSFNTFDSNGDGQVDVVGLRTGLERALRRDFVKRLKARMGGVPPTARQVEAKIAEMPGGRLLPEEPLRQLLEAYDKNGDGVLQPEEFA-------RTEAIFQKQREEKRLSRVAEWEKTRAEKEKAAKVEMARSLGVALPEDFNDGAPTALDKAVSGLPYLLPLLDGLVFAGHLFSAYPEQFAWAQ 987
A +LR A++LR +A L+S+ + E+Q AA +F++FD+N DG VDV L GLE LR+DF+KR+ M P A +V+ +I+EMPGG LLP E ++L+E+YD NGDGVLQP EFA R +++F + +E RL A E+ + + A++ G+ALPEDFNDG PT DK +S LPY LPL+D LVF H+F +P Q ++ +
Sbjct: 88 AAKLRAFAAELRLQAEELESKRDSEKQQAAQEAFDSFDTNDDGTVDVKELIAGLEGQLRKDFIKRMTKTMKRKPSPA-EVDERISEMPGGSLLPMELAQKLIESYDTNGDGVLQPSEFASKADMRVRLDSLFADRAQEARLEAAAAREREIENRGADKARQEAKARGLALPEDFNDGPPTITDKLLSVLPYTLPLMDSLVFGAHIFQTFPTQLSFLE 303
BLAST of mRNA_S-ischiensis_contig9.20658.1 vs. uniprot
Match: A0A6H5JY95_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY95_9PHAE) HSP 1 Score: 141 bits (355), Expect = 7.610e-33 Identity = 83/186 (44.62%), Postives = 118/186 (63.44%), Query Frame = 1
Query: 451 RSFNTFDSNGDGQVDVVGLRTGLERALRRDFVKRLKARMGGVPPTARQVEAKIAEMPGGRLLPEEPLRQLLEAYDKNGDGVLQPEEFA-------RTEAIFQKQREEKRLSRVAEWEKTRAEKEKAAKVEMARSLGVALPEDFNDGAPTALDKAVSGLPYLLPLLDGLVFAGHLFSAYPEQFAWAQ 987
RSF FDSN DG V V L+ GLE L++ F K+L ARMG PT +VEAKI E+PG L P++ +L++ YD+NGDGVLQ EFA R E+IF+++REE+ +R AE K + + K +M S+ D + T+L+KA+ LPY+LPL DG+V+A H++S +P+Q AW++
Sbjct: 104 RSFAAFDSNKDGAVGVAELKAGLEGPLKKTFTKQLTARMGR-KPTPEEVEAKILELPGRALFPDDLAERLIKLYDQNGDGVLQQSEFAPTEELRARLESIFRERREEELEARQAE-RKREMDAKTTGKGKMLSSVA---DSDREAASATSLEKALCALPYILPLSDGIVYAQHIYSTFPQQMAWSE 284
BLAST of mRNA_S-ischiensis_contig9.20658.1 vs. uniprot
Match: A0A6H5KVD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD7_9PHAE) HSP 1 Score: 116 bits (290), Expect = 3.820e-26 Identity = 64/131 (48.85%), Postives = 90/131 (68.70%), Query Frame = 3
Query: 984 AALLALVVYRSIPFSGLAAFFGMQFLAGKPEVNKLVRFNLRQAINLDVALFFPTALGSLA-ALVGSGXXXXXXXADSLLMGPLAQTASDAVFVAVLAAIAYSVGSSALGIIPDKIPVIGAMNRENPERGDG 1373
A LLAL RS+PF+ L FF + + P++NKLVRFN++QAINLD+AL P +G++ A++GS D+ + PLA SD VFVA+LAA+AYSVG+SA G P+K+P++G +NRENP+ +G
Sbjct: 73 AVLLAL---RSVPFATLIGFFSLSVGSSNPQINKLVRFNMQQAINLDIALILPGVVGAITGAVLGS---------DASKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDNQEG 191
BLAST of mRNA_S-ischiensis_contig9.20658.1 vs. uniprot
Match: A0A6H5KKK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK9_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.140e-25 Identity = 66/148 (44.59%), Postives = 88/148 (59.46%), Query Frame = 1
Query: 571 GVPPTARQVEAKIAEMPGGRLLPEEPLRQLLEAYDKNGDGVLQPEEFARTEAI-------FQKQREEKRLSRVAEWEKTRAEKEKAAKVEMARSLG--VALPEDFNDGAPTALDKAVSGLPYLLPLLDGLVFAGHLFSAYPEQFAWAQ 987
G P+ ++ + +IA +PGG L P+E +L++ YD NG+G+LQ EFA TE + F +QREEKRL+R+ E +++ M G V P D NDG D A+S LPYLLPL DG+VFA HLF +PEQ AWAQ
Sbjct: 2 GRKPSKKEADERIAGLPGGTLFPDELALKLIQTYDHNGNGLLQQSEFAPTEELRTRLENLFSQQREEKRLARMEE-------RQRQMDDNMRPDAGAVVVSPGDVNDGLVNTADNALSALPYLLPLADGIVFAAHLFGVFPEQTAWAQ 142
BLAST of mRNA_S-ischiensis_contig9.20658.1 vs. uniprot
Match: A0A6H5KUU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU9_9PHAE) HSP 1 Score: 117 bits (292), Expect = 1.550e-25 Identity = 64/133 (48.12%), Postives = 91/133 (68.42%), Query Frame = 3
Query: 978 VGAALLALVVYRSIPFSGLAAFFGMQFLAGKPEVNKLVRFNLRQAINLDVALFFPTALGSLA-ALVGSGXXXXXXXADSLLMGPLAQTASDAVFVAVLAAIAYSVGSSALGIIPDKIPVIGAMNRENPERGDG 1373
+ A LLAL RS+PF+ L FF + + P++NKLVRFN++QAINLD+AL P +G++ A++GS D+ + PLA SD VFVA+LAA+AYSVG+SA G P+K+P++G +NRENP+ +G
Sbjct: 153 LAAVLLAL---RSVPFATLVGFFSLSVGSSNPQINKLVRFNMQQAINLDIALILPGVVGAITGAVLGS---------DASKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDNQEG 273
BLAST of mRNA_S-ischiensis_contig9.20658.1 vs. uniprot
Match: A0A6H5JBJ0_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ0_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.170e-23 Identity = 64/129 (49.61%), Postives = 86/129 (66.67%), Query Frame = 3
Query: 978 VGAALLALVVYRSIPFSGLAAFFGMQF-LAGKPEVNKLVRFNLRQAINLDVALFFPTALGSLAALVGSGXXXXXXXADSLLMGPLAQTASDAVFVAVLAAIAYSVGSSALGIIPDKIPVIGAMNRENPE 1361
+ A LLAL RS+PF+ L FF + P+VNKLVRFN +QAIN+D+AL P +G++A V AD++ + PLA SD VFVA+LAA+AYSVG+SA G P+K+P++G +NRENPE
Sbjct: 182 LAAVLLAL---RSVPFATLIGFFSLSVHRLRNPQVNKLVRFNTQQAINVDIALILPGVVGAIAGAV--------LGADAVKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPE 299 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20658.1 >prot_S-ischiensis_contig9.20658.1 ID=prot_S-ischiensis_contig9.20658.1|Name=mRNA_S-ischiensis_contig9.20658.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=251bp MAASSPVDVQAERLREQASQLRAEAAALQSQMNEERQGAALRSFNTFDSNback to top mRNA from alignment at S-ischiensis_contig9:2338927..2341510+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20658.1 ID=mRNA_S-ischiensis_contig9.20658.1|Name=mRNA_S-ischiensis_contig9.20658.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2584bp|location=Sequence derived from alignment at S-ischiensis_contig9:2338927..2341510+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:2338927..2341510+ >mRNA_S-ischiensis_contig9.20658.1 ID=mRNA_S-ischiensis_contig9.20658.1|Name=mRNA_S-ischiensis_contig9.20658.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1506bp|location=Sequence derived from alignment at S-ischiensis_contig9:2338927..2341510+ (Schizocladia ischiensis KU_0333)back to top |