mRNA_S-ischiensis_contig9.20657.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20657.1
Unique NamemRNA_S-ischiensis_contig9.20657.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2338025..2338771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size499
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20657.1prot_S-ischiensis_contig9.20657.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2338079..2338758 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.4664416-UTR-S-ischiensis_contig9:2338024..23380781622817367.4664416-UTR-S-ischiensis_contig9:2338024..2338078Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2338025..2338078 -
1695741060.931489-UTR-S-ischiensis_contig9:2338024..23380781695741060.931489-UTR-S-ischiensis_contig9:2338024..2338078Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2338025..2338078 -
1622817367.49917-UTR-S-ischiensis_contig9:2338758..23387711622817367.49917-UTR-S-ischiensis_contig9:2338758..2338771Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2338759..2338771 -
1695741060.9742785-UTR-S-ischiensis_contig9:2338758..23387711695741060.9742785-UTR-S-ischiensis_contig9:2338758..2338771Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2338759..2338771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.4776576-CDS-S-ischiensis_contig9:2338078..23382901622817367.4776576-CDS-S-ischiensis_contig9:2338078..2338290Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2338079..2338290 -
1695741060.9410627-CDS-S-ischiensis_contig9:2338078..23382901695741060.9410627-CDS-S-ischiensis_contig9:2338078..2338290Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2338079..2338290 -
1622817367.4881682-CDS-S-ischiensis_contig9:2338538..23387581622817367.4881682-CDS-S-ischiensis_contig9:2338538..2338758Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2338539..2338758 -
1695741060.960732-CDS-S-ischiensis_contig9:2338538..23387581695741060.960732-CDS-S-ischiensis_contig9:2338538..2338758Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2338539..2338758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20657.1

>prot_S-ischiensis_contig9.20657.1 ID=prot_S-ischiensis_contig9.20657.1|Name=mRNA_S-ischiensis_contig9.20657.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=144bp
MPDTTATGGATRRNMALRKQPRSTRHGPRAAFIRRLLQKPALFQHRRERD
DGALELKAQKEASKGVTKPTTRTVFRASGWLQVRVGCCTSRRPRYVTRRH
VCTHNPRRCFILSAAAHLLPLLSSRSSSPRAAFPPALTRWMAR*
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mRNA from alignment at S-ischiensis_contig9:2338025..2338771-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20657.1 ID=mRNA_S-ischiensis_contig9.20657.1|Name=mRNA_S-ischiensis_contig9.20657.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=747bp|location=Sequence derived from alignment at S-ischiensis_contig9:2338025..2338771- (Schizocladia ischiensis KU_0333)
CTCCGCGGCGAACATGCCAGATACGACGGCTACCGGCGGTGCAACACGGC
GCAACATGGCGCTGCGCAAGCAACCCAGGTCTACCAGGCATGGCCCACGC
GCGGCCTTCATTCGACGCTTGCTGCAGAAACCAGCCCTCTTTCAGCACCG
TCGCGAGCGGGATGACGGAGCCTTGGAGTTGAAGGCGCAGAAAGAAGCAA
GCAAAGGCGTGACCAAGCCGACGACTAGAACAGGTGGAGTGCTTTGGAGA
TGAGAAACGTAGACCGAGCGCGAAAAGACACGACCGCGCGGCGAACACCT
GCATATCGGCGAGGTGGCTCCTCGCGCCTGGTCGCGTATGGTGTGGTCAT
TGCTCCTGTTTCCTCCTCCCGTGTCGATTCAAAAATAACAAAAAGCGGAC
AATCGTCCTCCCCGGGACTGCCTCGTGCCCAAGCTAAATCATTGCCTGCT
ACCCCGTTCACCCTCCGCGCACCGCCCACAGTTTTCCGAGCGTCAGGATG
GCTACAGGTTCGAGTGGGTTGCTGCACCTCAAGAAGACCGAGGTATGTGA
CCCGACGGCACGTCTGTACCCACAACCCGCGGCGCTGCTTCATACTGTCG
GCTGCTGCACATCTGCTTCCCTTGCTTTCCTCGCGTTCCTCTAGCCCGAG
AGCTGCCTTCCCGCCTGCCCTGACTCGTTGGATGGCCAGGTGAAGGACTT
GGGCACGCCCCAGTCCAACACACCGGCCACGTAGTGGAGCCATGCCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2338025..2338771-

>mRNA_S-ischiensis_contig9.20657.1 ID=mRNA_S-ischiensis_contig9.20657.1|Name=mRNA_S-ischiensis_contig9.20657.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=864bp|location=Sequence derived from alignment at S-ischiensis_contig9:2338025..2338771- (Schizocladia ischiensis KU_0333)
ATGCCAGATACGACGGCTACCGGCGGTGCAACACGGCGCAACATGGCGCT
GCGCAAGCAACCCAGGTCTACCAGGCATGGCCCACGCGCGGCCTTCATTC
GACGCTTGCTGCAGAAACCAGCCCTCTTTCAGCACCGTCGCGAGCGGGAT
GACGGAGCCTTGGAGTTGAAGGCGCAGAAAGAAGCAAGCAAAGGCGTGAC
CAAGCCGACGACTAGAACAGATGCCAGATACGACGGCTACCGGCGGTGCA
ACACGGCGCAACATGGCGCTGCGCAAGCAACCCAGGTCTACCAGGCATGG
CCCACGCGCGGCCTTCATTCGACGCTTGCTGCAGAAACCAGCCCTCTTTC
AGCACCGTCGCGAGCGGGATGACGGAGCCTTGGAGTTGAAGGCGCAGAAA
GAAGCAAGCAAAGGCGTGACCAAGCCGACGACTAGAACAGTTTTCCGAGC
GTCAGGATGGCTACAGGTTCGAGTGGGTTGCTGCACCTCAAGAAGACCGA
GGTATGTGACCCGACGGCACGTCTGTACCCACAACCCGCGGCGCTGCTTC
ATACTGTCGGCTGCTGCACATCTGCTTCCCTTGCTTTCCTCGCGTTCCTC
TAGCCCGAGAGCTGCCTTCCCGCCTGCCCTGACTCGTTGGATGGCCAGGT
GATTTTCCGAGCGTCAGGATGGCTACAGGTTCGAGTGGGTTGCTGCACCT
CAAGAAGACCGAGGTATGTGACCCGACGGCACGTCTGTACCCACAACCCG
CGGCGCTGCTTCATACTGTCGGCTGCTGCACATCTGCTTCCCTTGCTTTC
CTCGCGTTCCTCTAGCCCGAGAGCTGCCTTCCCGCCTGCCCTGACTCGTT
GGATGGCCAGGTGA
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