mRNA_S-ischiensis_contig9.20656.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20656.1
Unique NamemRNA_S-ischiensis_contig9.20656.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2336886..2337478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size439
Cds size438
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.4147627-CDS-S-ischiensis_contig9:2336885..23370371622817367.4147627-CDS-S-ischiensis_contig9:2336885..2337037Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2336886..2337037 +
1695741060.9067986-CDS-S-ischiensis_contig9:2336885..23370371695741060.9067986-CDS-S-ischiensis_contig9:2336885..2337037Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2336886..2337037 +
1622817367.4278533-CDS-S-ischiensis_contig9:2337192..23374781622817367.4278533-CDS-S-ischiensis_contig9:2337192..2337478Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2337193..2337478 +
1695741060.9206455-CDS-S-ischiensis_contig9:2337192..23374781695741060.9206455-CDS-S-ischiensis_contig9:2337192..2337478Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2337193..2337478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20656.1prot_S-ischiensis_contig9.20656.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2336886..2337478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20656.1

>prot_S-ischiensis_contig9.20656.1 ID=prot_S-ischiensis_contig9.20656.1|Name=mRNA_S-ischiensis_contig9.20656.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=146bp
MQGGFRPPARRRRRTAAKQKTPCRRVAMLLLVLLRLVMVVVVLVVPPPQL
QCRRYQFTRNSCARCASLILRKLAIRLRLRLGLLDVPPPLAAATLHVAEP
CHYVISPIVLLLCRRTGPRSSNGGQRTVPSWGGDMLSWLRYVEDCR
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mRNA from alignment at S-ischiensis_contig9:2336886..2337478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20656.1 ID=mRNA_S-ischiensis_contig9.20656.1|Name=mRNA_S-ischiensis_contig9.20656.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=593bp|location=Sequence derived from alignment at S-ischiensis_contig9:2336886..2337478+ (Schizocladia ischiensis KU_0333)
ATGCAGGGGGGGTTCAGACCCCCTGCTCGCAGACGACGTCGCACAGCTGC
TAAACAAAAAACGCCGTGTAGGCGGGTCGCTATGCTGCTGCTGGTGCTGC
TGCGGCTGGTGATGGTGGTGGTCGTACTAGTAGTACCTCCGCCACAGCTG
CAGCAGTACCAGTGGCAGCAGCCCCACCAGCTCTGGTGACGATGAGCAAC
ACCAGCAGTGGTGTGGCGTAGTACCTCCACCACGCCACTGCTGGTGTTGC
CGATCGCCACCAGAGCTGGTGGGGCTGCTGCCAGTGGTACTGCTGCAGCC
GCTGCAGGTGCAGGCGGTACCAGTTTACGCGCAACTCATGCGCGCGCTGT
GCCTCCCTCATCCTAAGGAAGCTGGCCATCCGCCTCCGCCTCCGCCTCGG
CCTGCTGGACGTGCCGCCCCCCCTGGCGGCGGCAACCCTCCACGTAGCGG
AGCCATGCCACTATGTCATCTCCCCCATCGTGCTGCTCCTCTGCCGAAGG
ACTGGCCCGAGGAGCAGCAATGGCGGCCAAAGGACTGTCCCATCGTGGGG
TGGCGACATGCTGAGTTGGCTGCGCTACGTGGAGGATTGCCGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2336886..2337478+

>mRNA_S-ischiensis_contig9.20656.1 ID=mRNA_S-ischiensis_contig9.20656.1|Name=mRNA_S-ischiensis_contig9.20656.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=876bp|location=Sequence derived from alignment at S-ischiensis_contig9:2336886..2337478+ (Schizocladia ischiensis KU_0333)
ATGCAGGGGGGGTTCAGACCCCCTGCTCGCAGACGACGTCGCACAGCTGC
TAAACAAAAAACGCCGTGTAGGCGGGTCGCTATGCTGCTGCTGGTGCTGC
TGCGGCTGGTGATGGTGGTGGTCGTACTAGTAGTACCTCCGCCACAGCTG
CAATGCAGGGGGGGTTCAGACCCCCTGCTCGCAGACGACGTCGCACAGCT
GCTAAACAAAAAACGCCGTGTAGGCGGGTCGCTATGCTGCTGCTGGTGCT
GCTGCGGCTGGTGATGGTGGTGGTCGTACTAGTAGTACCTCCGCCACAGC
TGCAGTGCAGGCGGTACCAGTTTACGCGCAACTCATGCGCGCGCTGTGCC
TCCCTCATCCTAAGGAAGCTGGCCATCCGCCTCCGCCTCCGCCTCGGCCT
GCTGGACGTGCCGCCCCCCCTGGCGGCGGCAACCCTCCACGTAGCGGAGC
CATGCCACTATGTCATCTCCCCCATCGTGCTGCTCCTCTGCCGAAGGACT
GGCCCGAGGAGCAGCAATGGCGGCCAAAGGACTGTCCCATCGTGGGGTGG
CGACATGCTGAGTTGGCTGCGCTACGTGGAGGATTGCCGTGTGCAGGCGG
TACCAGTTTACGCGCAACTCATGCGCGCGCTGTGCCTCCCTCATCCTAAG
GAAGCTGGCCATCCGCCTCCGCCTCCGCCTCGGCCTGCTGGACGTGCCGC
CCCCCCTGGCGGCGGCAACCCTCCACGTAGCGGAGCCATGCCACTATGTC
ATCTCCCCCATCGTGCTGCTCCTCTGCCGAAGGACTGGCCCGAGGAGCAG
CAATGGCGGCCAAAGGACTGTCCCATCGTGGGGTGGCGACATGCTGAGTT
GGCTGCGCTACGTGGAGGATTGCCGT
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