mRNA_S-ischiensis_contig9.20652.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20652.1
Unique NamemRNA_S-ischiensis_contig9.20652.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20652.1 vs. uniprot
Match: D7FMV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV0_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.390e-14
Identity = 42/81 (51.85%), Postives = 62/81 (76.54%), Query Frame = 2 
Query:  176 ARADKYTAMLRVREEQLSKLSELSHTSEQRRKSLERDRLLHPEKHRRVHRWMRDEAYQAD----RPARWGEARRANDIRLK 406
            ARA++++A+LR REEQ +++S L+ +  +  K L RDR+LHP+K++RVHR+MR++++       RPARWGE RR NDIRLK
Sbjct:  495 ARANRHSAVLRAREEQFTRVSSLARSRAKDAKDLARDRILHPDKYKRVHRYMREDSHTTGGASARPARWGEERRRNDIRLK 575
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMV0_ECTSI1.390e-1451.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2303091..2305257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size499
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20652.1prot_S-ischiensis_contig9.20652.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2303175..2305058 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817393.0957043-UTR-S-ischiensis_contig9:2303090..23031741622817393.0957043-UTR-S-ischiensis_contig9:2303090..2303174Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2303091..2303174 -
1695741080.34166-UTR-S-ischiensis_contig9:2303090..23031741695741080.34166-UTR-S-ischiensis_contig9:2303090..2303174Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2303091..2303174 -
1622817393.1434035-UTR-S-ischiensis_contig9:2305058..23052571622817393.1434035-UTR-S-ischiensis_contig9:2305058..2305257Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2305059..2305257 -
1695741080.3874624-UTR-S-ischiensis_contig9:2305058..23052571695741080.3874624-UTR-S-ischiensis_contig9:2305058..2305257Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2305059..2305257 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817393.1095731-CDS-S-ischiensis_contig9:2303174..23032541622817393.1095731-CDS-S-ischiensis_contig9:2303174..2303254Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2303175..2303254 -
1695741080.3518276-CDS-S-ischiensis_contig9:2303174..23032541695741080.3518276-CDS-S-ischiensis_contig9:2303174..2303254Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2303175..2303254 -
1622817393.1213846-CDS-S-ischiensis_contig9:2303708..23038121622817393.1213846-CDS-S-ischiensis_contig9:2303708..2303812Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2303709..2303812 -
1695741080.3658793-CDS-S-ischiensis_contig9:2303708..23038121695741080.3658793-CDS-S-ischiensis_contig9:2303708..2303812Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2303709..2303812 -
1622817393.1324673-CDS-S-ischiensis_contig9:2305026..23050581622817393.1324673-CDS-S-ischiensis_contig9:2305026..2305058Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2305027..2305058 -
1695741080.3777645-CDS-S-ischiensis_contig9:2305026..23050581695741080.3777645-CDS-S-ischiensis_contig9:2305026..2305058Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2305027..2305058 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20652.1

>prot_S-ischiensis_contig9.20652.1 ID=prot_S-ischiensis_contig9.20652.1|Name=mRNA_S-ischiensis_contig9.20652.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=72bp
MLRVREEQLSKLSELSHTSEQRRKSLERDRLLHPEKHRRVHRWMRDEAYQ
ADRPARWGEARRANDIRLKHN*
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mRNA from alignment at S-ischiensis_contig9:2303091..2305257-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20652.1 ID=mRNA_S-ischiensis_contig9.20652.1|Name=mRNA_S-ischiensis_contig9.20652.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2167bp|location=Sequence derived from alignment at S-ischiensis_contig9:2303091..2305257- (Schizocladia ischiensis KU_0333)
AGTGCCCCTATCATATTGCAGCACAAACGAGTGAGTGAACAACTGTCTTT
GAGCCCTTCACATTGTCCATGCGCCGACCAGACCAGACCAGACCCTCGAG
CGAGATGACCAACCGCTTTCGGCGTTTTTTTGTTCCCAGGCGCCTTTGCT
GGAAGGCGTTGTGGGCAGCGCCAGGGCCCGGGCGGACAAGTACACCGCCA
TGCTCCGCGTGCGGGAGGAGCAGCTGAGCAAGTGAGTTGGAGACCTCTGC
CTCCTCCACACTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCCCCCCTGCCCCTCCCCCTCCCCCCCCCCCTCCTCCCCCCCTCCCC
TCCCCTCCCCTCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TAACCCTCCCCCTGCCCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCAC
GCCGACCAGGCGTGTCGTAAGTATGTATGTATATACGTACTCATGTTGTG
CTTGCCGTAGTCCCGAGACCATTGAACACGCGCCTCGGTCGAGACGGAGC
AGGAGTGTGTATGTATGTACTCACGTCTCTGCATGCCCTGAACCCGAATG
ATCTCGTGTTTGCTCCTTCTCGTGGATCGCTGGCCAGCTGTAGCCGAAGC
CATTGTACAGTATATATGCAGTATATATACTTCGAAGTATATATCACCGC
CTCGACAATTATCCTGCCCCGCCTCGCTGCGCCTACCCTAATCGTCGGAG
AGATCTTGCCCCCCCATGCCAATTTTTCGGGAGCACTTTTCTCGCCGAAT
ACTGGTCGGATTCGCGCGGGGAAGCTCGGAAAATCTCCCTCAGGACCTGG
GGGAACTTTTCTAGGCATTTTCGGGACAATTCAGACCCTCCCGGCTAGAA
ACAGTCCCCTGAAAATTGTCCCGTGGGGGCAATATCTCTCCGACGATTAC
GGTAGCTCTCTGAAACTGCTTCTGTACTCTGGCCTTGAGAGTCCAGAGAG
ACGCAGAGACGAGATCGGCCTGCAAGGCTCGGGCACTGCAGGCATGAAAC
CCGCTCCCCCCACGCCGTAGTTGGGAGATGTTTTCGCCGCTTCTCTTCAA
GCAGACGCCGTGACAAACTGTAGTGAGAAGTGAAACTGTCGCTCCGAGAG
TGTCCTGAAGCAGAGTATGTGCGGTCCGGCTGGATCTTTGGCAGGTGGGC
TGCGAGAGCAACCTGGGCAACATCACGAGTGAGCTCGAGGCTCGACGGAC
CCACGTATGGATGGGCATACGACGGTCGGTCCACCGTAACGGGCGGACGG
ACGGATACACCCAGGCACTCACATTTTAGCTGTCTACAAACGGTCAACTC
TGAAGCTGTCGCGCTGAACCTGTCACTGTCTGTCCGTTTGTCGCTCTGAA
ACGTCTATGTTCGCTCTGAACTATGAAACCGCCGCCCGGCCGCAGGCTCT
CCGAGCTGTCGCACACCAGCGAGCAGAGGCGCAAGTCCTTGGAACGGGAT
CGCCTCCTGCACCCAGAGAAGCACCGCCGCGTGCACCGGTGGATGCGCGG
TGAGTGCGTGCATGTATGCATGCGTGCGTGCGTGTGTGTGTATGTGCGGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGACGGTGCTCATGCACGCGTGC
TGGTGTCGGTACCTCAAGCATGCTGCAGCCGTGACCTGGATTGCCAAGCC
AAAATCCCCAGTGCGCAATTCAGTACACTGCAGCACTTTTTTGCAAGAAG
ACAAGCGAGTGGGAAAGAAGAGGTGTTCCTACTTACCCAAGTTCAGGGCG
CCACCCCCGGAAGCCCTTCCTTTCACTCGCCTGCAGTTTGTTGTGCAATG
TCCCTGTACTCAAGTACGCGTACTTGTAGGGGTACCACTGCATGCTCATA
CATCGTACTCTACATCCGAACCCCTTCTTGCGACATCGGTGCCATGTCAT
CCAGCCCGCCCCTCGCCCCCGGCCCCCCGTGCCAACGTGCGTGCGCCGCC
CAGACGAGGCTTACCAGGCCGACCGGCCGGCACGCTGGGGGGAGGCCCGC
CGGGCAAACGACATCCGCCTCAAGCACAACTAAGGCGGCAACTGTCGTGG
ATTAGGGGAGACCCATATTATAGGGGCAGGGGTCTCCCCTAGCTAGAGAG
GTCTCCCCATATTAGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2303091..2305257-

>mRNA_S-ischiensis_contig9.20652.1 ID=mRNA_S-ischiensis_contig9.20652.1|Name=mRNA_S-ischiensis_contig9.20652.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=432bp|location=Sequence derived from alignment at S-ischiensis_contig9:2303091..2305257- (Schizocladia ischiensis KU_0333)
ATGCTCCGCGTGCGGGAGGAGCAGCTGAGCAAATGCTCCGCGTGCGGGAG
GAGCAGCTGAGCAAGCTCTCCGAGCTGTCGCACACCAGCGAGCAGAGGCG
CAAGTCCTTGGAACGGGATCGCCTCCTGCACCCAGAGAAGCACCGCCGCG
TGCACCGGTGGATGCGCGGCTCTCCGAGCTGTCGCACACCAGCGAGCAGA
GGCGCAAGTCCTTGGAACGGGATCGCCTCCTGCACCCAGAGAAGCACCGC
CGCGTGCACCGGTGGATGCGCGACGAGGCTTACCAGGCCGACCGGCCGGC
ACGCTGGGGGGAGGCCCGCCGGGCAAACGACATCCGCCTCAAGCACAACT
AAACGAGGCTTACCAGGCCGACCGGCCGGCACGCTGGGGGGAGGCCCGCC
GGGCAAACGACATCCGCCTCAAGCACAACTAA
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